Wall clock time and date at job start Mon Mar 30 2020 21:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34235 * 116.99778 * 2 1 4 4 O 1.20822 * 119.99795 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99952 * 179.97438 * 3 2 1 6 6 O 1.45202 * 115.54848 * 352.51139 * 5 3 2 7 7 C 1.34232 * 117.00300 * 294.44876 * 6 5 3 8 8 O 1.20826 * 119.99623 * 355.06555 * 7 6 5 9 9 C 1.50690 * 120.00371 * 175.06500 * 7 6 5 10 10 C 1.53004 * 109.47376 * 179.97438 * 9 7 6 11 11 C 1.50695 * 109.47243 * 179.97438 * 10 9 7 12 12 H 1.08002 * 120.00111 * 0.02562 * 11 10 9 13 13 C 1.37880 * 120.00202 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00164 * 180.02562 * 13 11 10 15 15 Si 1.86806 * 119.99651 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47072 * 89.99698 * 15 13 11 17 17 H 1.48507 * 109.46796 * 210.00219 * 15 13 11 18 18 H 1.48502 * 109.47150 * 329.99525 * 15 13 11 19 19 C 1.52996 * 117.49806 * 138.18103 * 5 3 2 20 20 C 1.52998 * 117.50033 * 206.83979 * 5 3 2 21 21 H 1.09004 * 109.46963 * 60.01061 * 1 2 3 22 22 H 1.09009 * 109.46741 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47575 * 300.00320 * 1 2 3 24 24 H 1.09004 * 109.47550 * 59.99913 * 9 7 6 25 25 H 1.08997 * 109.47378 * 299.99946 * 9 7 6 26 26 H 1.08997 * 109.46866 * 300.00312 * 10 9 7 27 27 H 1.09007 * 109.46634 * 59.99994 * 10 9 7 28 28 H 0.97002 * 119.99731 * 179.97438 * 14 13 11 29 29 H 1.09006 * 117.49583 * 215.00403 * 19 5 3 30 30 H 1.09001 * 117.50066 * 0.02562 * 19 5 3 31 31 H 1.09000 * 117.49782 * 359.97438 * 20 5 3 32 32 H 1.08995 * 117.49876 * 144.99650 * 20 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 8 4.2596 0.0107 0.1719 7 6 4.1078 -0.6128 1.3509 8 8 3.4925 -0.0776 2.2424 9 6 4.7048 -1.9801 1.5626 10 6 4.3891 -2.4605 2.9805 11 6 4.9856 -3.8281 3.1920 12 1 5.5353 -4.3067 2.3949 13 6 4.8296 -4.4686 4.4030 14 7 5.3506 -5.6619 4.5877 15 14 3.8782 -3.6412 5.7813 16 1 2.4431 -4.0101 5.6830 17 1 4.4158 -4.0882 7.0915 18 1 4.0196 -2.1675 5.6652 19 6 4.2191 2.3218 -0.9043 20 6 4.2081 2.5213 0.6133 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 5.7854 -1.9295 1.4287 25 1 4.2814 -2.6773 0.8396 26 1 4.8128 -1.7632 3.7031 27 1 3.3085 -2.5111 3.1148 28 1 5.2412 -6.1123 5.4398 29 1 5.1691 2.0614 -1.3710 30 1 3.5601 2.9537 -1.4997 31 1 3.5419 3.2845 1.0156 32 1 5.1508 2.3923 1.1450 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813093708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:05:47 Heat of formation + Delta-G solvation = -141.364500 kcal Electronic energy + Delta-G solvation = -17545.805646 eV Core-core repulsion = 14473.183945 eV Total energy + Delta-G solvation = -3072.621702 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.09289 -39.78830 -37.61247 -36.48491 -34.78396 -33.63299 -31.41272 -28.31098 -26.67737 -24.61351 -23.04429 -22.39299 -20.45177 -19.71714 -18.38162 -17.35583 -17.07499 -16.44621 -16.28978 -15.65534 -15.41514 -14.66279 -14.15442 -13.92741 -13.47013 -13.13211 -12.93091 -12.60167 -12.21044 -11.88903 -11.61482 -11.60488 -11.51028 -11.03733 -10.91217 -10.67539 -10.34551 -10.28956 -10.16116 -9.93538 -9.71179 -9.27691 -8.57213 -6.08776 -4.08658 1.81822 2.32818 2.56180 2.71669 3.32855 3.39926 3.49010 3.51191 4.25859 4.42614 4.43359 4.44706 4.87481 5.00220 5.09834 5.22745 5.26044 5.40772 5.50452 5.52962 5.72017 5.96126 5.99102 6.18092 6.40127 6.69045 7.21891 7.28921 7.51310 7.68831 8.13585 8.45083 8.93588 9.53011 11.03782 Molecular weight = 242.10amu Principal moments of inertia in cm(-1) A = 0.031450 B = 0.005922 C = 0.005538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.100047 B = 4726.604567 C = 5055.106840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.344 6.344 3 C 0.500 3.500 4 O -0.504 6.504 5 C 0.023 3.977 6 O -0.315 6.315 7 C 0.458 3.542 8 O -0.499 6.499 9 C -0.092 4.092 10 C -0.001 4.001 11 C -0.527 4.527 12 H 0.076 0.924 13 C 0.072 3.928 14 N -0.900 5.900 15 Si 0.876 3.124 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.262 1.262 19 C -0.116 4.116 20 C -0.144 4.144 21 H 0.063 0.937 22 H 0.105 0.895 23 H 0.064 0.936 24 H 0.100 0.900 25 H 0.101 0.899 26 H 0.026 0.974 27 H 0.022 0.978 28 H 0.264 0.736 29 H 0.123 0.877 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.674 14.475 -11.484 19.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.259 6.259 3 C 0.343 3.657 4 O -0.393 6.393 5 C -0.017 4.017 6 O -0.233 6.233 7 C 0.301 3.699 8 O -0.384 6.384 9 C -0.130 4.130 10 C -0.039 4.039 11 C -0.565 4.565 12 H 0.094 0.906 13 C -0.130 4.130 14 N -0.538 5.538 15 Si 0.703 3.297 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.186 1.186 19 C -0.152 4.152 20 C -0.181 4.181 21 H 0.082 0.918 22 H 0.124 0.876 23 H 0.083 0.917 24 H 0.118 0.882 25 H 0.120 0.880 26 H 0.044 0.956 27 H 0.040 0.960 28 H 0.074 0.926 29 H 0.141 0.859 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.081 14.791 -11.067 19.159 hybrid contribution -0.825 0.282 0.879 1.238 sum -5.906 15.073 -10.188 19.128 Atomic orbital electron populations 1.23337 0.75660 1.04212 1.02424 1.86536 1.23840 1.32330 1.83182 1.22406 0.89586 0.81919 0.71809 1.90660 1.65761 1.36362 1.46526 1.21656 0.85013 0.83111 1.11899 1.86685 1.65492 1.31893 1.39223 1.24938 0.77503 0.88630 0.78788 1.90626 1.38660 1.66081 1.43013 1.21571 1.01845 0.86582 1.02962 1.19486 0.97586 0.97129 0.89675 1.21019 1.35237 0.99825 1.00385 0.90587 1.24942 0.95091 0.94594 0.98390 1.69902 1.45232 1.13694 1.25006 0.86822 0.80462 0.80916 0.81500 1.20179 1.21289 1.18614 1.23477 1.02736 0.94788 0.94233 1.23623 1.03014 0.95533 0.95972 0.91826 0.87618 0.91686 0.88214 0.88044 0.95594 0.96001 0.92583 0.85852 0.86227 0.86425 0.86275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.50 16 2 O -0.34 -5.46 9.83 -43.68 -0.43 -5.89 16 3 C 0.50 7.93 7.00 36.00 0.25 8.18 16 4 O -0.50 -8.25 16.20 -18.75 -0.30 -8.55 16 5 C 0.02 0.33 2.11 -91.78 -0.19 0.13 16 6 O -0.32 -5.09 10.26 -43.67 -0.45 -5.54 16 7 C 0.46 8.64 7.31 36.00 0.26 8.90 16 8 O -0.50 -10.71 15.23 -18.75 -0.29 -11.00 16 9 C -0.09 -1.79 5.75 -27.89 -0.16 -1.95 16 10 C 0.00 -0.03 3.33 -27.88 -0.09 -0.12 16 11 C -0.53 -14.74 9.66 -34.44 -0.33 -15.08 16 12 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 13 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 14 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 15 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 18 H -0.26 -6.54 6.54 56.52 0.37 -6.17 16 19 C -0.12 -1.11 10.08 -26.70 -0.27 -1.38 16 20 C -0.14 -1.67 9.97 -26.70 -0.27 -1.94 16 21 H 0.06 0.64 8.13 -51.93 -0.42 0.21 16 22 H 0.11 0.99 8.14 -51.92 -0.42 0.57 16 23 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 24 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 25 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 26 H 0.03 0.65 7.16 -51.93 -0.37 0.28 16 27 H 0.02 0.54 7.53 -51.92 -0.39 0.15 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.12 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.12 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.12 1.33 7.92 -51.93 -0.41 0.92 16 32 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 288.95 15.07 4.35 4.35 Total: -1.00 -33.79 288.95 -4.98 -38.77 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: -4.14 Total: -3.15 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: 0.17 Total: 0.24 kcal Atomic # 7 Polarization: -27.43 SS G_CDS: 0.77 Total: -26.66 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -1.47 Total: -30.98 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -33.79 -4.98 -38.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813093708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.594 kcal (2) G-P(sol) polarization free energy of solvation -33.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds