Wall clock time and date at job start Mon Mar 30 2020 21:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00630 * 2 1 4 4 H 1.09000 * 109.46954 * 329.09036 * 3 2 1 5 5 C 1.50696 * 109.47161 * 89.08738 * 3 2 1 6 6 O 1.21205 * 120.00386 * 5.00203 * 5 3 2 7 7 O 1.34316 * 119.99784 * 185.00293 * 5 3 2 8 8 C 1.34923 * 116.99646 * 180.02562 * 7 5 3 9 9 H 1.08001 * 120.00222 * 0.02562 * 8 7 5 10 10 C 1.38754 * 119.99871 * 179.97438 * 8 7 5 11 11 N 1.31436 * 120.00354 * 179.97438 * 10 8 7 12 12 Si 1.86801 * 119.99809 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47183 * 89.99783 * 12 10 8 14 14 H 1.48510 * 109.47111 * 209.99696 * 12 10 8 15 15 H 1.48497 * 109.47291 * 329.99231 * 12 10 8 16 16 C 1.52999 * 109.47274 * 209.09085 * 3 2 1 17 17 C 1.53000 * 109.47128 * 174.22985 * 16 3 2 18 18 C 1.52999 * 109.47128 * 179.97438 * 17 16 3 19 19 C 1.53000 * 109.47243 * 60.00236 * 18 17 16 20 20 C 1.53000 * 109.46865 * 299.99924 * 19 18 17 21 21 C 1.52999 * 109.47128 * 60.00005 * 20 19 18 22 22 H 1.08996 * 109.47675 * 184.82221 * 1 2 3 23 23 H 1.09007 * 109.46967 * 304.82393 * 1 2 3 24 24 H 1.08997 * 109.47202 * 64.82332 * 1 2 3 25 25 H 0.97001 * 120.00189 * 180.02562 * 11 10 8 26 26 H 1.08995 * 109.46982 * 294.22954 * 16 3 2 27 27 H 1.09003 * 109.46942 * 300.00105 * 17 16 3 28 28 H 1.09002 * 109.47261 * 59.99541 * 17 16 3 29 29 H 1.08995 * 109.46982 * 299.99969 * 18 17 16 30 30 H 1.09004 * 109.46901 * 179.97438 * 18 17 16 31 31 H 1.08991 * 109.47069 * 180.02562 * 19 18 17 32 32 H 1.09003 * 109.47259 * 59.99630 * 19 18 17 33 33 H 1.08995 * 109.47164 * 300.00148 * 20 19 18 34 34 H 1.09003 * 109.47318 * 179.97438 * 20 19 18 35 35 H 1.09005 * 109.47336 * 180.02562 * 21 20 19 36 36 H 1.09003 * 109.47295 * 60.00111 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3526 1.9960 -0.5279 5 6 2.1940 1.7734 1.4206 6 8 1.9453 1.0262 2.3419 7 8 2.6333 3.0188 1.6658 8 6 2.7763 3.3742 2.9595 9 1 2.5412 2.6685 3.7426 10 6 3.2266 4.6459 3.2839 11 7 3.3655 4.9924 4.5441 12 14 3.6340 5.8662 1.9295 13 1 2.4207 6.6523 1.5900 14 1 4.7042 6.7842 2.3957 15 1 4.1011 5.1323 0.7260 16 6 3.3693 1.2585 -0.7013 17 6 3.9264 2.6777 -0.8292 18 6 5.2857 2.6307 -1.5300 19 6 5.1205 2.0203 -2.9232 20 6 4.5633 0.6011 -2.7953 21 6 3.2040 0.6480 -2.0945 22 1 -0.3634 -1.0240 0.0864 23 1 -0.3633 0.5869 0.8437 24 1 -0.3633 0.4372 -0.9300 25 1 3.6799 5.8816 4.7709 26 1 4.0586 0.6488 -0.1173 27 1 3.2370 3.2874 -1.4132 28 1 4.0445 3.1125 0.1633 29 1 5.9748 2.0211 -0.9456 30 1 5.6824 3.6418 -1.6215 31 1 6.0888 1.9864 -3.4222 32 1 4.4312 2.6299 -3.5076 33 1 5.2524 -0.0085 -2.2109 34 1 4.4451 0.1663 -3.7878 35 1 2.8073 -0.3631 -2.0030 36 1 2.5148 1.2576 -2.6789 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850054708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:03:53 Heat of formation + Delta-G solvation = -148.179366 kcal Electronic energy + Delta-G solvation = -18615.542286 eV Core-core repulsion = 15678.458165 eV Total energy + Delta-G solvation = -2937.084122 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.85629 -38.17828 -37.10068 -35.04829 -32.38167 -31.83954 -30.53489 -27.36051 -26.22961 -24.64506 -22.40422 -21.68150 -19.81674 -19.61671 -17.98226 -17.03384 -16.18832 -15.86912 -15.16762 -14.48183 -14.33874 -14.12970 -13.98003 -13.84998 -13.70561 -12.68022 -12.41463 -12.35946 -12.03257 -11.81488 -11.71836 -11.33215 -11.19506 -10.94922 -10.75228 -10.49352 -10.39682 -10.24580 -10.04835 -9.95934 -9.85844 -9.55002 -8.75966 -8.65265 -6.36018 -4.11451 3.11714 3.23212 3.33236 3.37256 3.73481 4.22795 4.26399 4.82711 4.90050 5.00279 5.10579 5.22973 5.39712 5.44427 5.47396 5.55772 5.65137 5.67700 5.70663 5.80045 5.83617 5.88630 6.08577 6.19331 6.25037 6.28031 6.30359 6.31683 6.49883 6.66365 6.87505 7.28107 7.74267 8.05856 8.64989 9.02614 9.69593 10.72773 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.019963 B = 0.009877 C = 0.007099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.238585 B = 2834.147181 C = 3943.192510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.357 6.357 3 C 0.113 3.887 4 H 0.084 0.916 5 C 0.386 3.614 6 O -0.526 6.526 7 O -0.247 6.247 8 C -0.382 4.382 9 H 0.107 0.893 10 C 0.066 3.934 11 N -0.876 5.876 12 Si 0.897 3.103 13 H -0.275 1.275 14 H -0.283 1.283 15 H -0.251 1.251 16 C -0.073 4.073 17 C -0.130 4.130 18 C -0.116 4.116 19 C -0.120 4.120 20 C -0.118 4.118 21 C -0.108 4.108 22 H 0.086 0.914 23 H 0.046 0.954 24 H 0.039 0.961 25 H 0.279 0.721 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.096 0.904 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.199 -4.604 -16.126 16.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C 0.053 3.947 4 H 0.102 0.898 5 C 0.230 3.770 6 O -0.420 6.420 7 O -0.156 6.156 8 C -0.458 4.458 9 H 0.125 0.875 10 C -0.137 4.137 11 N -0.515 5.515 12 Si 0.722 3.278 13 H -0.200 1.200 14 H -0.209 1.209 15 H -0.174 1.174 16 C -0.092 4.092 17 C -0.167 4.167 18 C -0.154 4.154 19 C -0.157 4.157 20 C -0.155 4.155 21 C -0.145 4.145 22 H 0.104 0.896 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.089 0.911 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.115 0.885 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.306 -4.799 -15.730 16.448 hybrid contribution -0.122 0.864 -0.181 0.892 sum 0.184 -3.935 -15.911 16.391 Atomic orbital electron populations 1.22819 0.81061 1.02868 0.99918 1.87922 1.19770 1.25491 1.94272 1.21544 0.96887 0.85618 0.90648 0.89832 1.23712 0.79520 0.81834 0.91921 1.90602 1.49677 1.55393 1.46298 1.83552 1.71122 1.29639 1.31295 1.20657 1.45463 1.00164 0.79494 0.87497 1.24531 0.95748 0.96678 0.96744 1.69605 1.44452 1.21098 1.16385 0.86379 0.78572 0.80450 0.82353 1.20012 1.20890 1.17445 1.21108 0.93803 0.98287 0.96004 1.21841 0.96320 0.95066 1.03456 1.21489 0.97490 1.00712 0.95661 1.21570 1.00406 0.96406 0.97347 1.21525 0.97065 0.96936 0.99990 1.21499 0.97028 1.01387 0.94609 0.89568 0.93489 0.94230 0.91100 0.90083 0.91998 0.88542 0.91927 0.92000 0.92473 0.92184 0.91981 0.92295 0.91069 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.79 101.05 1.09 1.52 16 2 O -0.36 -6.33 8.98 -55.10 -0.49 -6.82 16 3 C 0.11 2.06 2.22 -27.89 -0.06 2.00 16 4 H 0.08 1.35 7.84 -51.93 -0.41 0.94 16 5 C 0.39 9.32 7.07 36.00 0.25 9.57 16 6 O -0.53 -14.63 15.74 -25.76 -0.41 -15.04 16 7 O -0.25 -6.40 6.02 -20.72 -0.12 -6.52 16 8 C -0.38 -11.35 10.10 30.92 0.31 -11.04 16 9 H 0.11 3.55 7.09 -52.49 -0.37 3.18 16 10 C 0.07 1.90 5.49 -17.53 -0.10 1.80 16 11 N -0.88 -26.05 13.96 55.48 0.77 -25.27 16 12 Si 0.90 20.92 28.62 -169.99 -4.86 16.06 16 13 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.25 -5.47 5.97 56.52 0.34 -5.14 16 16 C -0.07 -1.18 1.95 -90.62 -0.18 -1.35 16 17 C -0.13 -2.11 4.86 -26.73 -0.13 -2.24 16 18 C -0.12 -1.58 5.92 -26.73 -0.16 -1.74 16 19 C -0.12 -1.34 5.92 -26.73 -0.16 -1.50 16 20 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16 21 C -0.11 -1.37 5.00 -26.73 -0.13 -1.50 16 22 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 23 H 0.05 0.75 8.10 -51.92 -0.42 0.33 16 24 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.10 1.93 4.54 -51.93 -0.24 1.69 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.91 7.54 -51.93 -0.39 0.52 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 291.73 15.07 4.40 4.40 Total: -1.00 -32.48 291.73 -5.81 -38.29 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -5.68 Total: 0.86 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 0.58 Total: -5.95 kcal Atomic # 7 Polarization: -26.05 SS G_CDS: 0.77 Total: -25.27 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -1.03 Total: -28.38 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.86 Total: 16.06 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.48 -5.81 -38.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850054708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.891 kcal (2) G-P(sol) polarization free energy of solvation -32.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds