Wall clock time and date at job start Mon Mar 30 2020 21:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47347 * 59.99862 * 8 6 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47399 * 299.99813 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.46505 * 120.00341 * 300.00268 * 12 2 1 14 14 C 1.34779 * 119.99848 * 120.00098 * 12 2 1 15 15 O 1.21581 * 120.00070 * 0.02562 * 14 12 2 16 16 N 1.34784 * 120.00046 * 180.02562 * 14 12 2 17 17 C 1.46492 * 119.99938 * 179.97438 * 16 14 12 18 18 H 1.09004 * 110.46111 * 34.30375 * 17 16 14 19 19 C 1.54513 * 110.51085 * 156.90922 * 17 16 14 20 20 C 1.54469 * 104.06532 * 118.64812 * 19 17 16 21 21 O 1.44426 * 104.80430 * 23.97616 * 20 19 17 22 22 C 1.44637 * 105.36891 * 319.56915 * 21 20 19 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 27 27 H 1.09005 * 109.46851 * 89.99998 * 13 12 2 28 28 H 1.08997 * 109.47129 * 209.99273 * 13 12 2 29 29 H 1.08993 * 109.46804 * 329.99912 * 13 12 2 30 30 H 0.97004 * 119.99941 * 0.02562 * 16 14 12 31 31 H 1.09000 * 110.50865 * 237.29321 * 19 17 16 32 32 H 1.09003 * 110.51050 * 359.86211 * 19 17 16 33 33 H 1.09000 * 110.37702 * 142.81120 * 20 19 17 34 34 H 1.08997 * 110.37277 * 265.14690 * 20 19 17 35 35 H 1.09004 * 110.34161 * 281.58765 * 22 21 20 36 36 H 1.09005 * 110.50602 * 159.18602 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.8075 -1.1190 4.0077 10 1 1.8270 -0.4198 5.2204 11 1 1.8281 -2.5198 4.0082 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 6 2.7932 -0.0357 -2.0833 15 8 3.0873 1.1282 -1.8907 16 7 3.2421 -0.6710 -3.1840 17 6 4.0838 0.0411 -4.1486 18 1 4.7283 0.7561 -3.6370 19 6 4.9288 -0.9576 -4.9707 20 6 4.4672 -0.7300 -6.4272 21 8 3.9445 0.6163 -6.4425 22 6 3.2116 0.7570 -5.2035 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.7082 1.1609 3.4844 27 1 0.7375 -2.1444 -1.9993 28 1 2.4628 -2.5819 -1.9863 29 1 1.5295 -2.5969 -0.4708 30 1 3.0071 -1.5995 -3.3379 31 1 5.9908 -0.7350 -4.8675 32 1 4.7220 -1.9811 -4.6578 33 1 5.3116 -0.8170 -7.1109 34 1 3.6870 -1.4429 -6.6938 35 1 2.2379 0.2735 -5.2822 36 1 3.0936 1.8099 -4.9472 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094890708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:05:47 Heat of formation + Delta-G solvation = -66.900237 kcal Electronic energy + Delta-G solvation = -18080.904855 eV Core-core repulsion = 15179.638011 eV Total energy + Delta-G solvation = -2901.266843 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.99794 -38.70126 -35.46084 -34.24719 -32.77717 -30.79204 -29.34311 -28.05663 -26.06238 -25.19106 -23.10460 -21.85038 -20.69109 -19.22061 -17.41734 -16.62882 -16.29936 -16.03661 -15.37235 -15.17437 -14.65092 -14.36466 -13.77217 -13.32624 -13.07134 -12.66628 -12.48394 -12.15523 -11.72616 -11.61515 -11.52894 -11.38476 -11.06922 -10.93055 -10.83397 -10.64956 -10.24260 -10.14440 -9.92164 -9.34731 -9.11364 -8.73326 -8.40894 -7.52217 -6.05128 -4.12969 3.23991 3.28589 3.33994 3.36877 3.87845 3.99425 4.38756 4.47792 4.66813 4.75050 4.89005 5.12458 5.24873 5.26109 5.51648 5.56582 5.63918 5.75917 5.91531 5.96742 6.01154 6.31595 6.55340 6.74370 6.83859 6.93226 7.06945 7.20793 7.52629 7.71706 7.88713 8.11487 8.25231 8.74699 8.88514 9.32574 9.54699 11.00123 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.044514 B = 0.005315 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.859611 B = 5266.508557 C = 5397.441416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.272 3.728 3 H 0.064 0.936 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.609 5.609 13 C 0.087 3.913 14 C 0.698 3.302 15 O -0.595 6.595 16 N -0.749 5.749 17 C 0.134 3.866 18 H 0.102 0.898 19 C -0.163 4.163 20 C 0.045 3.955 21 O -0.377 6.377 22 C 0.034 3.966 23 H 0.010 0.990 24 H 0.093 0.907 25 H 0.028 0.972 26 H 0.264 0.736 27 H 0.040 0.960 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.392 0.608 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.786 -6.915 -13.714 15.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.172 3.828 3 H 0.082 0.918 4 C -0.565 4.565 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.344 5.344 13 C -0.057 4.057 14 C 0.399 3.601 15 O -0.473 6.473 16 N -0.408 5.408 17 C 0.027 3.973 18 H 0.120 0.880 19 C -0.201 4.201 20 C -0.032 4.032 21 O -0.295 6.295 22 C -0.044 4.044 23 H 0.030 0.970 24 H 0.112 0.888 25 H 0.047 0.953 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.101 0.899 30 H 0.228 0.772 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.917 -5.762 -13.543 15.230 hybrid contribution 0.124 -1.258 0.991 1.606 sum 4.041 -7.019 -12.552 14.938 Atomic orbital electron populations 1.22095 0.98329 0.99287 1.00742 1.18846 0.90574 0.94328 0.79058 0.91811 1.21306 1.31784 1.13009 0.90383 0.92399 1.24886 0.94980 0.94999 0.98905 1.69871 1.36302 1.22584 1.23828 0.86554 0.79207 0.79522 0.82055 1.20304 1.21173 1.20297 1.47551 1.51470 1.11368 1.23971 1.21487 0.98091 0.83749 1.02368 1.16017 0.79448 0.84961 0.79634 1.90864 1.63202 1.15712 1.77560 1.45369 1.56574 1.15173 1.23711 1.22013 0.91668 0.94182 0.89400 0.88022 1.23218 1.01229 1.00235 0.95433 1.23377 0.98433 0.85002 0.96358 1.89165 1.70670 1.30211 1.39457 1.24007 0.94990 1.02643 0.82800 0.97048 0.88847 0.95277 0.92642 0.94142 0.93651 0.89922 0.77244 0.89617 0.89911 0.89048 0.92316 0.91902 0.88229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.97 37.16 0.33 -3.19 16 2 C 0.27 7.03 2.64 -69.08 -0.18 6.85 16 3 H 0.06 1.92 6.90 -51.93 -0.36 1.56 16 4 C -0.53 -14.24 7.99 -34.44 -0.28 -14.52 16 5 H 0.06 1.54 7.33 -52.49 -0.38 1.15 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.20 11.32 55.43 0.63 -24.57 16 8 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 12 N -0.61 -13.07 2.75 -181.00 -0.50 -13.57 16 13 C 0.09 1.44 9.20 59.85 0.55 1.99 16 14 C 0.70 14.74 8.28 -86.91 -0.72 14.02 16 15 O -0.59 -15.09 15.35 5.29 0.08 -15.01 16 16 N -0.75 -11.52 4.96 -57.14 -0.28 -11.80 16 17 C 0.13 1.85 3.44 -66.37 -0.23 1.62 16 18 H 0.10 1.62 7.61 -51.93 -0.40 1.22 16 19 C -0.16 -1.60 6.85 -25.17 -0.17 -1.77 16 20 C 0.05 0.43 7.64 37.93 0.29 0.72 16 21 O -0.38 -4.94 11.65 -35.23 -0.41 -5.35 16 22 C 0.03 0.46 7.37 37.93 0.28 0.74 16 23 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 24 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 25 H 0.03 0.64 7.67 -51.93 -0.40 0.24 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.04 0.59 6.36 -51.93 -0.33 0.26 16 29 H 0.08 1.46 7.02 -51.93 -0.36 1.10 16 30 H 0.39 4.89 6.08 -40.82 -0.25 4.65 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.69 7.68 -51.93 -0.40 0.29 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.83 8.06 -51.93 -0.42 0.42 16 36 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 292.51 15.07 4.41 4.41 Total: -1.00 -31.89 292.51 -6.60 -38.48 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -5.28 Total: 3.26 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -0.22 Total: 8.13 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: -0.15 Total: -49.94 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.33 Total: -20.36 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.89 -6.60 -38.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094890708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.416 kcal (2) G-P(sol) polarization free energy of solvation -31.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds