Wall clock time and date at job start Mon Mar 30 2020 21:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47347 * 59.99862 * 8 6 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47399 * 299.99813 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.46505 * 120.00341 * 300.00268 * 12 2 1 14 14 C 1.34779 * 119.99848 * 120.00098 * 12 2 1 15 15 O 1.21581 * 120.00070 * 0.02562 * 14 12 2 16 16 N 1.34784 * 120.00046 * 180.02562 * 14 12 2 17 17 C 1.46492 * 119.99938 * 179.97438 * 16 14 12 18 18 H 1.09004 * 110.46111 * 34.30375 * 17 16 14 19 19 C 1.54513 * 110.51085 * 156.90922 * 17 16 14 20 20 C 1.54469 * 104.06532 * 118.64812 * 19 17 16 21 21 O 1.44426 * 104.80430 * 23.97616 * 20 19 17 22 22 C 1.44637 * 105.36891 * 319.56915 * 21 20 19 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 27 27 H 1.09005 * 109.46851 * 89.99998 * 13 12 2 28 28 H 1.08997 * 109.47129 * 209.99273 * 13 12 2 29 29 H 1.08993 * 109.46804 * 329.99912 * 13 12 2 30 30 H 0.97004 * 119.99941 * 0.02562 * 16 14 12 31 31 H 1.09000 * 110.50865 * 237.29321 * 19 17 16 32 32 H 1.09003 * 110.51050 * 359.86211 * 19 17 16 33 33 H 1.09000 * 110.37702 * 142.81120 * 20 19 17 34 34 H 1.08997 * 110.37277 * 265.14690 * 20 19 17 35 35 H 1.09004 * 110.34161 * 281.58765 * 22 21 20 36 36 H 1.09005 * 110.50602 * 159.18602 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.8075 -1.1190 4.0077 10 1 1.8270 -0.4198 5.2204 11 1 1.8281 -2.5198 4.0082 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 6 2.7932 -0.0357 -2.0833 15 8 3.0873 1.1282 -1.8907 16 7 3.2421 -0.6710 -3.1840 17 6 4.0838 0.0411 -4.1486 18 1 4.7283 0.7561 -3.6370 19 6 4.9288 -0.9576 -4.9707 20 6 4.4672 -0.7300 -6.4272 21 8 3.9445 0.6163 -6.4425 22 6 3.2116 0.7570 -5.2035 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.7082 1.1609 3.4844 27 1 0.7375 -2.1444 -1.9993 28 1 2.4628 -2.5819 -1.9863 29 1 1.5295 -2.5969 -0.4708 30 1 3.0071 -1.5995 -3.3379 31 1 5.9908 -0.7350 -4.8675 32 1 4.7220 -1.9811 -4.6578 33 1 5.3116 -0.8170 -7.1109 34 1 3.6870 -1.4429 -6.6938 35 1 2.2379 0.2735 -5.2822 36 1 3.0936 1.8099 -4.9472 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094890708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:05:46 Heat of formation + Delta-G solvation = -89.972606 kcal Electronic energy + Delta-G solvation = -18081.905347 eV Core-core repulsion = 15179.638011 eV Total energy + Delta-G solvation = -2902.267336 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.36627 -39.96340 -37.21374 -35.70840 -34.65212 -32.06346 -30.85874 -29.27058 -27.54789 -27.27212 -24.19056 -23.26087 -21.97442 -20.86013 -18.96637 -18.36455 -17.76026 -17.13907 -16.88106 -16.52209 -16.05097 -15.95490 -15.15039 -14.87407 -14.37834 -14.19765 -13.97474 -13.53219 -13.21974 -13.07373 -12.86981 -12.75246 -12.72224 -12.57014 -12.24592 -12.17122 -12.10918 -11.91785 -11.20726 -11.04070 -10.85112 -10.49729 -10.14651 -9.21448 -8.11875 -6.28493 1.43069 1.45588 1.52920 1.82580 2.25508 2.44438 2.98643 3.15924 3.27297 3.54748 3.84962 3.98340 4.23675 4.28004 4.39246 4.67723 4.71261 4.73501 4.81669 4.86355 4.89657 4.93426 5.01540 5.06030 5.09606 5.43279 5.48943 5.55309 5.69854 5.84262 6.00519 6.19108 6.31855 6.79580 7.20672 7.39300 7.73957 8.92247 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.044514 B = 0.005315 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.859611 B = 5266.508557 C = 5397.441416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.277 3.723 3 H 0.007 0.993 4 C -0.538 4.538 5 H 0.061 0.939 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.966 3.034 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.261 1.261 12 N -0.617 5.617 13 C 0.083 3.917 14 C 0.691 3.309 15 O -0.648 6.648 16 N -0.723 5.723 17 C 0.127 3.873 18 H 0.072 0.928 19 C -0.150 4.150 20 C 0.042 3.958 21 O -0.394 6.394 22 C 0.039 3.961 23 H 0.018 0.982 24 H 0.067 0.933 25 H 0.047 0.953 26 H 0.264 0.736 27 H 0.063 0.937 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.410 0.590 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.115 0.885 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.353 -9.806 -14.795 18.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.174 3.826 3 H 0.025 0.975 4 C -0.577 4.577 5 H 0.080 0.920 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.791 3.209 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.186 1.186 12 N -0.351 5.351 13 C -0.060 4.060 14 C 0.392 3.608 15 O -0.530 6.530 16 N -0.383 5.383 17 C 0.020 3.980 18 H 0.091 0.909 19 C -0.188 4.188 20 C -0.035 4.035 21 O -0.313 6.313 22 C -0.039 4.039 23 H 0.037 0.963 24 H 0.086 0.914 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.102 0.898 29 H 0.090 0.910 30 H 0.250 0.750 31 H 0.114 0.886 32 H 0.125 0.875 33 H 0.133 0.867 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.488 -8.727 -14.683 17.661 hybrid contribution -0.022 -0.345 1.240 1.287 sum 4.466 -9.072 -13.443 16.821 Atomic orbital electron populations 1.21871 0.97209 1.00059 0.99789 1.18424 0.91356 0.91928 0.80850 0.97475 1.21568 1.31863 1.13107 0.91129 0.92042 1.25744 0.95102 0.95657 1.02026 1.70023 1.37314 1.23922 1.24453 0.85494 0.78303 0.79001 0.78090 1.20396 1.21012 1.18590 1.47417 1.51566 1.13259 1.22904 1.21749 1.00693 0.80729 1.02787 1.16251 0.79321 0.84467 0.80733 1.90827 1.64978 1.18309 1.78926 1.45088 1.55556 1.15731 1.21961 1.22135 0.91647 0.95098 0.89076 0.90926 1.23199 1.00867 1.00122 0.94637 1.23662 0.99778 0.83521 0.96497 1.89154 1.70785 1.32615 1.38730 1.23816 0.95362 1.01497 0.83273 0.96338 0.91422 0.93416 0.92670 0.91840 0.89757 0.91010 0.75041 0.88629 0.87514 0.86736 0.90484 0.91339 0.90357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.37 8.97 71.98 0.65 -5.73 16 2 C 0.28 14.64 2.64 44.25 0.12 14.76 16 3 H 0.01 0.46 6.90 -2.39 -0.02 0.45 16 4 C -0.54 -29.34 7.99 25.60 0.20 -29.13 16 5 H 0.06 3.23 7.33 -2.91 -0.02 3.21 16 6 C 0.01 0.78 5.30 84.66 0.45 1.23 16 7 N -0.92 -53.33 11.32 21.45 0.24 -53.09 16 8 Si 0.97 43.01 29.54 68.60 2.03 45.03 16 9 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 11 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 12 N -0.62 -26.27 2.75 -844.84 -2.33 -28.59 16 13 C 0.08 2.51 9.20 127.77 1.18 3.68 16 14 C 0.69 29.32 8.28 179.05 1.48 30.80 16 15 O -0.65 -34.39 15.35 -3.97 -0.06 -34.45 16 16 N -0.72 -21.08 4.96 -452.96 -2.25 -23.33 16 17 C 0.13 3.37 3.44 46.01 0.16 3.52 16 18 H 0.07 2.38 7.61 -2.38 -0.02 2.36 16 19 C -0.15 -2.46 6.85 31.61 0.22 -2.24 16 20 C 0.04 0.65 7.64 72.48 0.55 1.20 16 21 O -0.39 -9.70 11.65 -148.98 -1.74 -11.44 16 22 C 0.04 1.04 7.37 72.48 0.53 1.58 16 23 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.07 3.66 6.07 -2.39 -0.01 3.65 16 25 H 0.05 2.09 7.67 -2.38 -0.02 2.07 16 26 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 27 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 28 H 0.08 1.86 6.36 -2.39 -0.02 1.84 16 29 H 0.07 2.36 7.02 -2.39 -0.02 2.35 16 30 H 0.41 8.79 6.08 -92.71 -0.56 8.23 16 31 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.11 1.28 7.68 -2.39 -0.02 1.26 16 33 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.07 1.74 8.06 -2.39 -0.02 1.72 16 36 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 Total: -1.00 -72.45 292.51 1.95 -70.51 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.51 Total: 15.69 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: 5.54 Total: 19.67 kcal Atomic # 7 Polarization: -100.69 SS G_CDS: -4.33 Total: -105.02 kcal Atomic # 8 Polarization: -44.09 SS G_CDS: -1.80 Total: -45.89 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -72.45 1.95 -70.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094890708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.464 kcal (2) G-P(sol) polarization free energy of solvation -72.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds