Wall clock time and date at job start Mon Mar 30 2020 21:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99465 * 2 1 4 4 C 1.52997 * 109.46885 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47169 * 65.51794 * 4 3 2 6 6 C 1.36940 * 119.99969 * 264.94577 * 5 4 3 7 7 H 1.08005 * 119.99871 * 327.67968 * 6 5 4 8 8 C 1.38815 * 119.99808 * 147.67538 * 6 5 4 9 9 N 1.31621 * 119.99996 * 155.19573 * 8 6 5 10 10 Si 1.86797 * 119.99894 * 335.19253 * 8 6 5 11 11 H 1.48494 * 109.47362 * 94.72369 * 10 8 6 12 12 H 1.48501 * 109.46984 * 214.72140 * 10 8 6 13 13 H 1.48496 * 109.47456 * 334.71859 * 10 8 6 14 14 C 1.46497 * 120.00379 * 84.95394 * 5 4 3 15 15 C 1.52996 * 109.47729 * 84.25489 * 14 5 4 16 16 H 1.09000 * 110.27564 * 302.09095 * 15 14 5 17 17 C 1.54594 * 110.30900 * 179.88996 * 15 14 5 18 18 C 1.54934 * 102.92160 * 219.12643 * 17 15 14 19 19 N 1.48534 * 103.22736 * 37.41470 * 18 17 15 20 20 C 1.46897 * 111.00555 * 200.27563 * 19 18 17 21 21 C 1.47904 * 105.82064 * 320.79501 * 19 18 17 22 22 H 1.08994 * 109.47509 * 299.99939 * 1 2 3 23 23 H 1.09003 * 109.46870 * 60.00340 * 1 2 3 24 24 H 1.09004 * 109.46740 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47289 * 60.00262 * 3 2 1 26 26 H 1.08997 * 109.47594 * 299.99375 * 3 2 1 27 27 H 1.09007 * 109.47329 * 305.51404 * 4 3 2 28 28 H 1.09007 * 109.47530 * 185.52115 * 4 3 2 29 29 H 0.96996 * 120.00292 * 179.97438 * 9 8 6 30 30 H 1.08999 * 109.47158 * 204.26594 * 14 5 4 31 31 H 1.09006 * 109.46609 * 324.25536 * 14 5 4 32 32 H 1.08998 * 110.72882 * 337.48877 * 17 15 14 33 33 H 1.09002 * 110.72339 * 100.77466 * 17 15 14 34 34 H 1.09001 * 110.67074 * 278.98328 * 18 17 15 35 35 H 1.09001 * 110.81445 * 155.91908 * 18 17 15 36 36 H 1.08997 * 109.47562 * 177.39373 * 20 19 18 37 37 H 1.09004 * 109.47340 * 297.40352 * 20 19 18 38 38 H 1.09004 * 109.46628 * 57.39390 * 20 19 18 39 39 H 1.08998 * 109.91051 * 265.97377 * 21 19 18 40 40 H 1.09000 * 109.91886 * 144.68000 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 7 3.9775 0.5754 -1.2561 6 6 4.1985 -0.7744 -1.3220 7 1 4.5605 -1.3054 -0.4539 8 6 3.9570 -1.4603 -2.5045 9 7 4.5898 -2.5875 -2.7524 10 14 2.7342 -0.7835 -3.7438 11 1 3.4559 0.0185 -4.7640 12 1 2.0279 -1.9087 -4.4074 13 1 1.7465 0.0775 -3.0451 14 6 4.1835 1.4101 -2.4423 15 6 5.5848 2.0227 -2.3979 16 1 5.7126 2.6077 -1.4871 17 6 5.8238 2.9062 -3.6438 18 6 7.2991 2.6020 -4.0063 19 7 7.4283 1.1511 -3.7157 20 6 8.8364 0.7735 -3.5354 21 6 6.6540 0.9173 -2.4775 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6885 1.8464 0.8900 26 1 1.6886 1.8464 -0.8900 27 1 3.8502 0.5611 0.8374 28 1 3.9783 2.1759 0.0995 29 1 4.4208 -3.0670 -3.5785 30 1 4.0824 0.7985 -3.3389 31 1 3.4392 2.2063 -2.4599 32 1 5.1588 2.6147 -4.4568 33 1 5.6964 3.9607 -3.3990 34 1 7.9767 3.1816 -3.3794 35 1 7.4878 2.8014 -5.0612 36 1 8.8991 -0.2838 -3.2783 37 1 9.3829 0.9556 -4.4608 38 1 9.2722 1.3690 -2.7330 39 1 7.3129 0.9750 -1.6111 40 1 6.1746 -0.0608 -2.5183 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700255708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:06:27 Heat of formation + Delta-G solvation = -8.133448 kcal Electronic energy + Delta-G solvation = -19012.421454 eV Core-core repulsion = 16249.536024 eV Total energy + Delta-G solvation = -2762.885429 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.64678 -37.29764 -35.47448 -32.08394 -31.52932 -29.35599 -27.93494 -26.04183 -25.78406 -24.05582 -23.17044 -20.68310 -20.34292 -19.24819 -16.80569 -15.82616 -15.59860 -15.29215 -15.17154 -14.68125 -14.33179 -13.70130 -13.65697 -13.11801 -12.77350 -12.55794 -12.32006 -12.06726 -11.65480 -11.49616 -11.18987 -11.10758 -10.93559 -10.87252 -10.70031 -10.51266 -10.30899 -10.04769 -9.97128 -9.53737 -9.27276 -8.98371 -8.34158 -7.82505 -6.80595 -5.82747 -3.15565 3.46049 3.59964 3.66749 4.49993 4.60166 4.69643 4.97096 5.20800 5.37551 5.40668 5.50501 5.63558 5.73769 5.78240 5.80585 5.80679 5.93732 5.98351 5.99654 6.05503 6.10559 6.19391 6.19805 6.23325 6.30226 6.34449 6.48218 6.61090 6.64077 6.80539 6.93910 7.32366 7.59449 7.61347 7.87920 8.17776 8.48553 9.12275 9.88002 10.23165 11.32990 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.024079 B = 0.008986 C = 0.007840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.571135 B = 3115.374023 C = 3570.729182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.357 6.357 3 C 0.040 3.960 4 C 0.149 3.851 5 N -0.598 5.598 6 C -0.245 4.245 7 H 0.081 0.919 8 C 0.039 3.961 9 N -0.901 5.901 10 Si 0.870 3.130 11 H -0.287 1.287 12 H -0.307 1.307 13 H -0.271 1.271 14 C 0.143 3.857 15 C -0.110 4.110 16 H 0.061 0.939 17 C -0.122 4.122 18 C 0.034 3.966 19 N -0.523 5.523 20 C 0.021 3.979 21 C 0.043 3.957 22 H 0.028 0.972 23 H 0.029 0.971 24 H 0.078 0.922 25 H 0.029 0.971 26 H 0.034 0.966 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.261 0.739 30 H 0.066 0.934 31 H 0.031 0.969 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.035 0.965 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.019 0.981 39 H 0.028 0.972 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.343 11.019 1.502 11.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C -0.039 4.039 4 C 0.022 3.978 5 N -0.319 5.319 6 C -0.374 4.374 7 H 0.098 0.902 8 C -0.161 4.161 9 N -0.542 5.542 10 Si 0.702 3.298 11 H -0.216 1.216 12 H -0.236 1.236 13 H -0.196 1.196 14 C 0.017 3.983 15 C -0.132 4.132 16 H 0.080 0.920 17 C -0.160 4.160 18 C -0.094 4.094 19 N -0.247 5.247 20 C -0.128 4.128 21 C -0.084 4.084 22 H 0.047 0.953 23 H 0.048 0.952 24 H 0.097 0.903 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.053 0.947 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.037 0.963 39 H 0.047 0.953 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.297 10.348 0.996 10.401 hybrid contribution -0.709 1.091 -0.143 1.309 sum -0.412 11.439 0.853 11.479 Atomic orbital electron populations 1.22645 0.83608 1.01879 0.98482 1.88164 1.17198 1.27253 1.94864 1.23390 0.98286 0.84708 0.97554 1.21001 0.89119 0.96832 0.90876 1.44165 1.76634 1.04748 1.06384 1.18653 1.37544 0.81817 0.99348 0.90191 1.25234 0.97869 0.95254 0.97704 1.69865 1.40853 1.18165 1.25365 0.87081 0.83902 0.77459 0.81395 1.21576 1.23588 1.19620 1.21232 0.92165 0.93350 0.91523 1.22570 0.98714 0.95616 0.96310 0.92022 1.22534 0.95998 0.98683 0.98825 1.23191 0.96466 0.89570 1.00176 1.64839 1.09693 1.15576 1.34555 1.22439 0.89451 1.01392 0.99520 1.23124 0.93890 1.03108 0.88260 0.95320 0.95217 0.90349 0.95339 0.94812 0.91839 0.93003 0.92959 0.91626 0.95023 0.91089 0.91913 0.94687 0.91038 0.91182 0.92234 0.96273 0.95336 0.85701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.36 -7.59 10.44 -35.23 -0.37 -7.96 16 3 C 0.04 0.74 6.28 37.16 0.23 0.98 16 4 C 0.15 2.89 6.09 -4.04 -0.02 2.87 16 5 N -0.60 -13.82 1.99 -173.24 -0.34 -14.17 16 6 C -0.25 -6.71 8.12 -15.06 -0.12 -6.83 16 7 H 0.08 2.39 8.06 -52.48 -0.42 1.97 16 8 C 0.04 1.12 4.64 -17.43 -0.08 1.04 16 9 N -0.90 -27.53 13.97 55.49 0.78 -26.76 16 10 Si 0.87 23.00 25.01 -169.99 -4.25 18.75 16 11 H -0.29 -7.46 6.59 56.52 0.37 -7.09 16 12 H -0.31 -8.36 7.11 56.52 0.40 -7.96 16 13 H -0.27 -7.09 7.11 56.52 0.40 -6.69 16 14 C 0.14 3.09 3.63 -4.05 -0.01 3.07 16 15 C -0.11 -2.08 3.26 -89.27 -0.29 -2.38 16 16 H 0.06 1.09 8.10 -51.93 -0.42 0.67 16 17 C -0.12 -1.98 6.61 -24.87 -0.16 -2.14 16 18 C 0.03 0.54 6.56 -1.90 -0.01 0.53 16 19 N -0.52 -9.91 5.55 -238.72 -1.33 -11.23 16 20 C 0.02 0.34 9.40 60.06 0.56 0.90 16 21 C 0.04 0.89 6.10 -2.75 -0.02 0.87 16 22 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.03 0.64 8.06 -51.93 -0.42 0.22 16 27 H 0.06 1.27 8.00 -51.93 -0.42 0.85 16 28 H 0.05 0.86 8.07 -51.92 -0.42 0.44 16 29 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 30 H 0.07 1.61 3.03 -51.93 -0.16 1.45 16 31 H 0.03 0.63 8.03 -51.93 -0.42 0.21 16 32 H 0.07 1.22 7.86 -51.93 -0.41 0.81 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.03 0.51 7.96 -51.93 -0.41 0.09 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.02 0.28 8.00 -51.93 -0.42 -0.13 16 39 H 0.03 0.57 7.73 -51.93 -0.40 0.17 16 40 H 0.13 3.19 5.39 -51.93 -0.28 2.91 16 LS Contribution 311.22 15.07 4.69 4.69 Total: -1.00 -31.03 311.22 -6.78 -37.81 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -7.14 Total: -1.68 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: 1.18 Total: 0.55 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.90 Total: -52.16 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -0.37 Total: -7.96 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -4.25 Total: 18.75 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.03 -6.78 -37.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700255708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.675 kcal (2) G-P(sol) polarization free energy of solvation -31.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds