Wall clock time and date at job start Mon Mar 30 2020 21:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99465 * 2 1 4 4 C 1.52997 * 109.46885 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47169 * 65.51794 * 4 3 2 6 6 C 1.36940 * 119.99969 * 264.94577 * 5 4 3 7 7 H 1.08005 * 119.99871 * 327.67968 * 6 5 4 8 8 C 1.38815 * 119.99808 * 147.67538 * 6 5 4 9 9 N 1.31621 * 119.99996 * 155.19573 * 8 6 5 10 10 Si 1.86797 * 119.99894 * 335.19253 * 8 6 5 11 11 H 1.48494 * 109.47362 * 94.72369 * 10 8 6 12 12 H 1.48501 * 109.46984 * 214.72140 * 10 8 6 13 13 H 1.48496 * 109.47456 * 334.71859 * 10 8 6 14 14 C 1.46497 * 120.00379 * 84.95394 * 5 4 3 15 15 C 1.52996 * 109.47729 * 84.25489 * 14 5 4 16 16 H 1.09000 * 110.27564 * 302.09095 * 15 14 5 17 17 C 1.54594 * 110.30900 * 179.88996 * 15 14 5 18 18 C 1.54934 * 102.92160 * 219.12643 * 17 15 14 19 19 N 1.48534 * 103.22736 * 37.41470 * 18 17 15 20 20 C 1.46897 * 111.00555 * 200.27563 * 19 18 17 21 21 C 1.47904 * 105.82064 * 320.79501 * 19 18 17 22 22 H 1.08994 * 109.47509 * 299.99939 * 1 2 3 23 23 H 1.09003 * 109.46870 * 60.00340 * 1 2 3 24 24 H 1.09004 * 109.46740 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47289 * 60.00262 * 3 2 1 26 26 H 1.08997 * 109.47594 * 299.99375 * 3 2 1 27 27 H 1.09007 * 109.47329 * 305.51404 * 4 3 2 28 28 H 1.09007 * 109.47530 * 185.52115 * 4 3 2 29 29 H 0.96996 * 120.00292 * 179.97438 * 9 8 6 30 30 H 1.08999 * 109.47158 * 204.26594 * 14 5 4 31 31 H 1.09006 * 109.46609 * 324.25536 * 14 5 4 32 32 H 1.08998 * 110.72882 * 337.48877 * 17 15 14 33 33 H 1.09002 * 110.72339 * 100.77466 * 17 15 14 34 34 H 1.09001 * 110.67074 * 278.98328 * 18 17 15 35 35 H 1.09001 * 110.81445 * 155.91908 * 18 17 15 36 36 H 1.08997 * 109.47562 * 177.39373 * 20 19 18 37 37 H 1.09004 * 109.47340 * 297.40352 * 20 19 18 38 38 H 1.09004 * 109.46628 * 57.39390 * 20 19 18 39 39 H 1.08998 * 109.91051 * 265.97377 * 21 19 18 40 40 H 1.09000 * 109.91886 * 144.68000 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 7 3.9775 0.5754 -1.2561 6 6 4.1985 -0.7744 -1.3220 7 1 4.5605 -1.3054 -0.4539 8 6 3.9570 -1.4603 -2.5045 9 7 4.5898 -2.5875 -2.7524 10 14 2.7342 -0.7835 -3.7438 11 1 3.4559 0.0185 -4.7640 12 1 2.0279 -1.9087 -4.4074 13 1 1.7465 0.0775 -3.0451 14 6 4.1835 1.4101 -2.4423 15 6 5.5848 2.0227 -2.3979 16 1 5.7126 2.6077 -1.4871 17 6 5.8238 2.9062 -3.6438 18 6 7.2991 2.6020 -4.0063 19 7 7.4283 1.1511 -3.7157 20 6 8.8364 0.7735 -3.5354 21 6 6.6540 0.9173 -2.4775 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6885 1.8464 0.8900 26 1 1.6886 1.8464 -0.8900 27 1 3.8502 0.5611 0.8374 28 1 3.9783 2.1759 0.0995 29 1 4.4208 -3.0670 -3.5785 30 1 4.0824 0.7985 -3.3389 31 1 3.4392 2.2063 -2.4599 32 1 5.1588 2.6147 -4.4568 33 1 5.6964 3.9607 -3.3990 34 1 7.9767 3.1816 -3.3794 35 1 7.4878 2.8014 -5.0612 36 1 8.8991 -0.2838 -3.2783 37 1 9.3829 0.9556 -4.4608 38 1 9.2722 1.3690 -2.7330 39 1 7.3129 0.9750 -1.6111 40 1 6.1746 -0.0608 -2.5183 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700255708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:06:27 Heat of formation + Delta-G solvation = -31.110550 kcal Electronic energy + Delta-G solvation = -19013.417815 eV Core-core repulsion = 16249.536024 eV Total energy + Delta-G solvation = -2763.881791 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.12981 -38.78980 -37.17002 -33.87802 -33.26879 -30.84573 -29.50330 -27.65168 -27.18897 -25.66079 -24.83986 -22.14320 -21.88084 -20.85378 -18.74978 -17.43262 -17.18755 -16.78570 -16.72222 -16.27759 -15.87507 -15.28583 -15.06867 -14.81048 -14.50508 -14.20983 -13.90165 -13.61834 -13.18304 -13.02016 -12.75893 -12.64564 -12.56261 -12.32433 -12.20198 -12.17899 -11.88837 -11.62413 -11.54409 -11.49928 -11.09699 -10.50716 -10.37824 -9.23667 -8.73890 -8.05249 -5.31243 1.33277 1.42821 1.53583 2.53128 3.06996 3.25544 3.26881 3.43612 3.88034 3.92877 4.06189 4.36194 4.43570 4.45787 4.49001 4.52328 4.55197 4.58202 4.66386 4.67979 4.72349 4.79344 4.79950 4.87143 4.89203 4.96472 5.05514 5.13860 5.16608 5.27419 5.40789 5.65574 6.04458 6.11342 6.25367 6.26917 6.53305 7.12302 7.79269 8.16064 9.15148 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.024079 B = 0.008986 C = 0.007840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.571135 B = 3115.374023 C = 3570.729182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.042 3.958 4 C 0.143 3.857 5 N -0.609 5.609 6 C -0.211 4.211 7 H 0.041 0.959 8 C -0.013 4.013 9 N -0.950 5.950 10 Si 0.928 3.072 11 H -0.283 1.283 12 H -0.324 1.324 13 H -0.263 1.263 14 C 0.141 3.859 15 C -0.105 4.105 16 H 0.082 0.918 17 C -0.116 4.116 18 C 0.037 3.963 19 N -0.552 5.552 20 C 0.023 3.977 21 C 0.048 3.952 22 H 0.059 0.941 23 H 0.031 0.969 24 H 0.080 0.920 25 H 0.067 0.933 26 H 0.033 0.967 27 H 0.050 0.950 28 H 0.090 0.910 29 H 0.255 0.745 30 H 0.034 0.966 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.100 0.900 34 H 0.055 0.945 35 H 0.087 0.913 36 H 0.050 0.950 37 H 0.082 0.918 38 H 0.033 0.967 39 H 0.025 0.975 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.019 14.605 1.711 14.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C -0.037 4.037 4 C 0.018 3.982 5 N -0.331 5.331 6 C -0.341 4.341 7 H 0.059 0.941 8 C -0.208 4.208 9 N -0.596 5.596 10 Si 0.761 3.239 11 H -0.212 1.212 12 H -0.254 1.254 13 H -0.188 1.188 14 C 0.016 3.984 15 C -0.126 4.126 16 H 0.100 0.900 17 C -0.154 4.154 18 C -0.090 4.090 19 N -0.277 5.277 20 C -0.125 4.125 21 C -0.079 4.079 22 H 0.078 0.922 23 H 0.050 0.950 24 H 0.099 0.901 25 H 0.085 0.915 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.108 0.892 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.118 0.882 34 H 0.074 0.926 35 H 0.106 0.894 36 H 0.069 0.931 37 H 0.100 0.900 38 H 0.052 0.948 39 H 0.044 0.956 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.083 14.000 1.220 14.053 hybrid contribution -0.541 0.015 -0.095 0.549 sum -0.623 14.015 1.125 14.074 Atomic orbital electron populations 1.22811 0.81443 1.02681 1.00047 1.88098 1.19809 1.29110 1.95236 1.23360 0.96934 0.84120 0.99279 1.21193 0.90504 0.98097 0.88400 1.44235 1.77254 1.03344 1.08222 1.18391 1.34537 0.83767 0.97373 0.94119 1.25636 0.99713 0.95799 0.99683 1.69989 1.43211 1.20324 1.26064 0.86135 0.81899 0.76213 0.79698 1.21173 1.25364 1.18761 1.21263 0.94639 0.93128 0.89375 1.22472 0.95991 0.95424 0.98751 0.89975 1.22548 0.95948 1.00114 0.96812 1.23271 0.96615 0.87525 1.01591 1.64730 1.11030 1.18312 1.33581 1.22439 0.88437 1.00459 1.01213 1.22819 0.94643 1.01236 0.89212 0.92206 0.95017 0.90146 0.91493 0.94894 0.93125 0.89230 0.93649 0.94811 0.92506 0.92360 0.88193 0.92645 0.89431 0.93136 0.89966 0.94804 0.95621 0.91185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.08 16 2 O -0.40 -16.56 10.44 -148.98 -1.56 -18.11 16 3 C 0.04 1.42 6.28 71.98 0.45 1.87 16 4 C 0.14 5.26 6.09 86.38 0.53 5.79 16 5 N -0.61 -27.66 1.99 -701.99 -1.40 -29.06 16 6 C -0.21 -11.86 8.12 84.03 0.68 -11.18 16 7 H 0.04 2.58 8.06 -2.91 -0.02 2.56 16 8 C -0.01 -0.79 4.64 84.86 0.39 -0.40 16 9 N -0.95 -61.14 13.97 21.65 0.30 -60.84 16 10 Si 0.93 49.06 25.01 68.60 1.72 50.77 16 11 H -0.28 -14.57 6.59 99.48 0.66 -13.91 16 12 H -0.32 -17.73 7.11 99.48 0.71 -17.02 16 13 H -0.26 -13.32 7.11 99.48 0.71 -12.61 16 14 C 0.14 5.82 3.63 86.38 0.31 6.13 16 15 C -0.11 -3.70 3.26 -9.92 -0.03 -3.73 16 16 H 0.08 2.56 8.10 -2.39 -0.02 2.54 16 17 C -0.12 -3.32 6.61 31.80 0.21 -3.11 16 18 C 0.04 1.05 6.56 86.65 0.57 1.62 16 19 N -0.55 -20.25 5.55 -909.16 -5.05 -25.30 16 20 C 0.02 0.71 9.40 127.69 1.20 1.91 16 21 C 0.05 2.00 6.10 86.45 0.53 2.53 16 22 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 25 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.03 1.12 8.06 -2.39 -0.02 1.10 16 27 H 0.05 1.97 8.00 -2.38 -0.02 1.95 16 28 H 0.09 2.60 8.07 -2.38 -0.02 2.58 16 29 H 0.25 15.90 8.31 -92.71 -0.77 15.12 16 30 H 0.03 1.63 3.03 -2.39 -0.01 1.63 16 31 H 0.06 2.06 8.03 -2.38 -0.02 2.04 16 32 H 0.06 1.83 7.86 -2.39 -0.02 1.81 16 33 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.06 1.35 7.96 -2.39 -0.02 1.33 16 35 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 38 H 0.03 0.93 8.00 -2.38 -0.02 0.91 16 39 H 0.03 1.03 7.73 -2.39 -0.02 1.01 16 40 H 0.07 3.71 5.39 -2.39 -0.01 3.69 16 Total: -1.00 -70.71 311.22 1.04 -69.68 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 0.93 Total: 9.34 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 6.09 Total: 3.52 kcal Atomic # 7 Polarization: -109.05 SS G_CDS: -6.14 Total: -115.19 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -1.56 Total: -18.11 kcal Atomic # 14 Polarization: 49.06 SS G_CDS: 1.72 Total: 50.77 kcal Total: -70.71 1.04 -69.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700255708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.565 kcal (2) G-P(sol) polarization free energy of solvation -70.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds