Wall clock time and date at job start Mon Mar 30 2020 21:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42889 * 1 3 3 C 1.42904 * 114.00220 * 2 1 4 4 C 1.50698 * 110.45620 * 65.35006 * 3 2 1 5 5 O 1.21281 * 119.99824 * 240.54172 * 4 3 2 6 6 N 1.34774 * 120.00232 * 60.53668 * 4 3 2 7 7 C 1.46497 * 120.00276 * 354.83446 * 6 4 3 8 8 C 1.46507 * 119.99810 * 174.83854 * 6 4 3 9 9 C 1.50694 * 109.47165 * 90.00056 * 8 6 4 10 10 H 1.07993 * 120.00318 * 359.97438 * 9 8 6 11 11 C 1.37880 * 119.99833 * 179.97438 * 9 8 6 12 12 N 1.31521 * 119.99802 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00044 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47393 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47008 * 120.00242 * 13 11 9 16 16 H 1.48501 * 109.47211 * 240.00066 * 13 11 9 17 17 C 1.54800 * 110.50353 * 188.06947 * 3 2 1 18 18 C 1.54484 * 103.92349 * 118.64727 * 17 3 2 19 19 O 1.44422 * 104.90018 * 23.99712 * 18 17 3 20 20 C 1.44420 * 105.27888 * 319.43647 * 19 18 17 21 21 H 1.09002 * 109.47593 * 304.82962 * 1 2 3 22 22 H 1.09003 * 109.47135 * 64.83037 * 1 2 3 23 23 H 1.09005 * 109.47559 * 184.82469 * 1 2 3 24 24 H 1.09000 * 109.46912 * 93.99811 * 7 6 4 25 25 H 1.08995 * 109.47433 * 213.99828 * 7 6 4 26 26 H 1.09002 * 109.47128 * 333.99943 * 7 6 4 27 27 H 1.09002 * 109.46780 * 210.00521 * 8 6 4 28 28 H 1.09001 * 109.46634 * 329.99846 * 8 6 4 29 29 H 0.97006 * 119.99690 * 179.97438 * 12 11 9 30 30 H 1.08997 * 110.60955 * 0.03164 * 17 3 2 31 31 H 1.09008 * 110.54978 * 237.22800 * 17 3 2 32 32 H 1.09008 * 110.36605 * 265.11471 * 18 17 3 33 33 H 1.08999 * 110.37087 * 142.88833 * 18 17 3 34 34 H 1.08999 * 110.37282 * 159.34135 * 20 19 18 35 35 H 1.08996 * 110.37549 * 281.67929 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6865 2.0261 1.2833 5 8 1.0625 3.0657 1.2541 6 7 2.0902 1.5154 2.4633 7 6 2.7438 0.2051 2.5093 8 6 1.8753 2.2706 3.7003 9 6 0.5364 1.9039 4.2865 10 1 -0.0919 1.1810 3.7875 11 6 0.1134 2.4913 5.4600 12 7 0.8788 3.3713 6.0680 13 14 -1.5466 2.0374 6.1864 14 1 -2.2093 1.0323 5.3169 15 1 -1.3537 1.4677 7.5442 16 1 -2.3968 3.2516 6.2752 17 6 3.5422 1.2168 -0.2035 18 6 3.7875 1.9872 -1.5199 19 8 2.6634 2.8862 -1.6391 20 6 1.5155 2.1182 -1.2170 21 1 -0.3634 0.5869 0.8436 22 1 -0.3633 0.4371 -0.9301 23 1 -0.3634 -1.0240 0.0864 24 1 3.8252 0.3372 2.4748 25 1 2.4694 -0.3057 3.4322 26 1 2.4231 -0.3910 1.6549 27 1 2.6629 2.0298 4.4143 28 1 1.8965 3.3383 3.4823 29 1 0.5811 3.7848 6.8934 30 1 3.8563 0.1780 -0.3047 31 1 4.0664 1.6966 0.6231 32 1 3.8131 1.2977 -2.3639 33 1 4.7191 2.5500 -1.4622 34 1 0.7017 2.7818 -0.9246 35 1 1.1926 1.4489 -2.0144 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352238708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:04:49 Heat of formation + Delta-G solvation = -112.563329 kcal Electronic energy + Delta-G solvation = -18931.307948 eV Core-core repulsion = 15930.342343 eV Total energy + Delta-G solvation = -3000.965606 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 243.130 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.62461 -37.96846 -36.91570 -34.89510 -32.66460 -31.44438 -28.84281 -27.79016 -26.65125 -25.85577 -23.87577 -22.45128 -21.35100 -18.80227 -17.40928 -16.73649 -16.46704 -15.84001 -15.43982 -14.98694 -14.82532 -14.58361 -14.35650 -13.73989 -13.50937 -12.98578 -12.47657 -12.33995 -12.16480 -11.81136 -11.67990 -11.46650 -11.28146 -11.10276 -10.96366 -10.89347 -10.60199 -10.20355 -10.17636 -9.69850 -9.61789 -8.70095 -8.45529 -7.66417 -6.06032 -4.10700 3.08459 3.28237 3.35652 3.39138 3.56088 3.85212 4.12288 4.41947 4.58320 4.73661 4.92164 5.08842 5.21756 5.28284 5.39114 5.45677 5.59094 5.62550 5.69467 5.82811 5.85604 5.91533 6.00176 6.01353 6.37245 6.68437 6.95390 7.10551 7.39957 7.51156 7.89799 8.21067 8.36036 8.84663 9.00457 9.54119 11.02208 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.033802 B = 0.007026 C = 0.006774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.150841 B = 3984.018144 C = 4132.207916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.362 6.362 3 C 0.067 3.933 4 C 0.493 3.507 5 O -0.529 6.529 6 N -0.589 5.589 7 C 0.069 3.931 8 C 0.243 3.757 9 C -0.524 4.524 10 H 0.057 0.943 11 C 0.060 3.940 12 N -0.895 5.895 13 Si 0.898 3.102 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.282 1.282 17 C -0.141 4.141 18 C 0.044 3.956 19 O -0.363 6.363 20 C 0.035 3.965 21 H 0.055 0.945 22 H 0.045 0.955 23 H 0.090 0.910 24 H 0.041 0.959 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.034 0.966 28 H 0.042 0.958 29 H 0.263 0.737 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.626 -8.090 -12.935 15.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.281 6.281 3 C 0.024 3.976 4 C 0.277 3.723 5 O -0.406 6.406 6 N -0.320 5.320 7 C -0.075 4.075 8 C 0.124 3.876 9 C -0.563 4.563 10 H 0.075 0.925 11 C -0.142 4.142 12 N -0.534 5.534 13 Si 0.726 3.274 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.208 1.208 17 C -0.179 4.179 18 C -0.033 4.033 19 O -0.281 6.281 20 C -0.043 4.043 21 H 0.073 0.927 22 H 0.063 0.937 23 H 0.109 0.891 24 H 0.059 0.941 25 H 0.088 0.912 26 H 0.102 0.898 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.116 0.884 31 H 0.109 0.891 32 H 0.081 0.919 33 H 0.113 0.887 34 H 0.131 0.869 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.425 -7.367 -12.823 15.437 hybrid contribution -1.072 -0.354 0.728 1.343 sum 3.353 -7.720 -12.095 14.736 Atomic orbital electron populations 1.22880 0.80280 1.03215 1.01109 1.87887 1.20606 1.24960 1.94602 1.23244 0.95247 0.84302 0.94789 1.20435 0.80662 0.86081 0.85108 1.90683 1.39195 1.24268 1.86500 1.48093 1.56874 1.19135 1.07899 1.21963 0.96092 0.85510 1.03904 1.19340 0.96698 0.92483 0.79047 1.21429 1.02929 1.24550 1.07355 0.92466 1.24947 0.97535 0.94890 0.96800 1.69947 1.37120 1.27972 1.18329 0.86437 0.83820 0.78352 0.78775 1.19840 1.20918 1.20849 1.23075 0.92246 1.03035 0.99496 1.23457 0.91270 0.92722 0.95854 1.89186 1.16317 1.35175 1.87399 1.23907 0.91088 0.95563 0.93710 0.92670 0.93655 0.89108 0.94079 0.91163 0.89810 0.94849 0.93995 0.92746 0.88382 0.89064 0.91906 0.88661 0.86858 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.42 101.05 1.05 1.35 16 2 O -0.36 -5.37 7.92 -35.23 -0.28 -5.65 16 3 C 0.07 1.09 0.57 -90.05 -0.05 1.04 16 4 C 0.49 10.56 5.37 -10.99 -0.06 10.50 16 5 O -0.53 -13.57 15.07 5.56 0.08 -13.48 16 6 N -0.59 -12.84 2.83 -182.96 -0.52 -13.36 16 7 C 0.07 1.17 9.15 59.85 0.55 1.72 16 8 C 0.24 6.47 5.14 -5.19 -0.03 6.45 16 9 C -0.52 -15.00 9.39 -34.44 -0.32 -15.32 16 10 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 12 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 13 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 14 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 C -0.14 -1.85 5.25 -25.00 -0.13 -1.98 16 18 C 0.04 0.53 7.62 37.94 0.29 0.82 16 19 O -0.36 -5.82 11.65 -35.23 -0.41 -6.23 16 20 C 0.03 0.54 5.59 37.93 0.21 0.75 16 21 H 0.05 0.94 7.23 -51.93 -0.38 0.56 16 22 H 0.04 0.54 6.99 -51.93 -0.36 0.18 16 23 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.04 0.60 7.86 -51.93 -0.41 0.19 16 25 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 26 H 0.08 1.28 4.87 -51.93 -0.25 1.03 16 27 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 28 H 0.04 1.25 7.50 -51.93 -0.39 0.86 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.10 1.06 8.01 -51.93 -0.42 0.64 16 31 H 0.09 1.27 7.24 -51.92 -0.38 0.90 16 32 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 33 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.11 1.98 6.87 -51.93 -0.36 1.62 16 35 H 0.07 0.90 7.55 -51.93 -0.39 0.51 16 LS Contribution 286.43 15.07 4.32 4.32 Total: -1.00 -33.49 286.43 -4.66 -38.15 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -4.98 Total: -1.61 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: 1.41 Total: 6.96 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.22 Total: -39.40 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.61 Total: -25.36 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -33.49 -4.66 -38.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352238708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.409 kcal (2) G-P(sol) polarization free energy of solvation -33.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds