Wall clock time and date at job start Mon Mar 30 2020 21:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 108.78309 * 2 1 4 4 C 1.50731 * 108.80744 * 118.38902 * 2 1 3 5 5 C 1.54384 * 109.13719 * 212.28128 * 4 2 1 6 6 N 1.40458 * 111.45251 * 284.57353 * 5 4 2 7 7 C 1.46900 * 110.99785 * 187.82582 * 6 5 4 8 8 C 1.53001 * 109.47523 * 75.89349 * 7 6 5 9 9 O 1.42904 * 109.46952 * 64.62956 * 8 7 6 10 10 C 1.42898 * 114.00220 * 179.97438 * 9 8 7 11 11 C 1.50704 * 109.47295 * 179.97438 * 10 9 8 12 12 H 1.07998 * 119.99607 * 359.73309 * 11 10 9 13 13 C 1.37879 * 119.99825 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00003 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99670 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47265 * 59.99914 * 15 13 11 17 17 H 1.48501 * 109.46833 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47006 * 299.99761 * 15 13 11 19 19 C 1.47598 * 114.43160 * 61.24175 * 6 5 4 20 20 C 1.50737 * 108.45412 * 279.56908 * 19 6 5 21 21 O 1.43933 * 111.88417 * 93.37605 * 20 19 6 22 22 H 1.08997 * 109.47230 * 301.60995 * 1 2 3 23 23 H 1.09004 * 109.47078 * 61.61042 * 1 2 3 24 24 H 1.08997 * 109.47348 * 181.60879 * 1 2 3 25 25 H 1.09005 * 109.52235 * 92.38658 * 4 2 1 26 26 H 1.08999 * 109.52284 * 332.18236 * 4 2 1 27 27 H 1.08999 * 109.08288 * 164.05679 * 5 4 2 28 28 H 1.09005 * 109.02557 * 45.04156 * 5 4 2 29 29 H 1.09003 * 109.47486 * 315.89261 * 7 6 5 30 30 H 1.09000 * 109.46983 * 195.89320 * 7 6 5 31 31 H 1.08994 * 109.46979 * 304.63394 * 8 7 6 32 32 H 1.09001 * 109.47338 * 184.63014 * 8 7 6 33 33 H 1.08999 * 109.46738 * 60.00439 * 10 9 8 34 34 H 1.09000 * 109.47495 * 300.00523 * 10 9 8 35 35 H 0.97000 * 119.99707 * 179.97438 * 14 13 11 36 36 H 1.08995 * 109.63913 * 39.26151 * 19 6 5 37 37 H 1.09004 * 109.63806 * 159.88009 * 19 6 5 38 38 H 1.08999 * 109.00050 * 332.75377 * 20 19 6 39 39 H 1.09003 * 108.93118 * 213.94630 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8809 1.0319 0.0000 4 6 2.0159 -0.6784 1.2552 5 6 3.3463 -0.0319 1.6974 6 7 4.4148 -0.4497 0.8870 7 6 5.6984 0.0204 1.4247 8 6 6.0891 -0.8339 2.6324 9 8 6.3179 -2.1797 2.2098 10 6 6.6912 -3.0655 3.2671 11 6 6.9055 -4.4497 2.7109 12 1 6.7660 -4.6353 1.6562 13 6 7.2739 -5.4802 3.5495 14 7 7.4387 -5.2552 4.8348 15 14 7.5402 -7.1957 2.8599 16 1 8.6209 -7.1578 1.8420 17 1 7.9269 -8.1164 3.9590 18 1 6.2841 -7.6767 2.2307 19 6 4.2758 -0.0927 -0.5384 20 6 3.3611 -1.0953 -1.1944 21 8 1.9929 -0.6486 -1.2022 22 1 -0.3633 0.5386 0.8752 23 1 -0.3633 0.4886 -0.9041 24 1 -0.3634 -1.0272 0.0289 25 1 2.1738 -1.7388 1.0584 26 1 1.2732 -0.5599 2.0442 27 1 3.5522 -0.3112 2.7307 28 1 3.2531 1.0523 1.6332 29 1 5.6042 1.0620 1.7318 30 1 6.4669 -0.0638 0.6563 31 1 5.2835 -0.8156 3.3663 32 1 6.9986 -0.4344 3.0811 33 1 5.8983 -3.0935 4.0145 34 1 7.6133 -2.7122 3.7287 35 1 7.6975 -5.9803 5.4248 36 1 3.8478 0.9058 -0.6259 37 1 5.2535 -0.1190 -1.0197 38 1 3.4230 -2.0394 -0.6533 39 1 3.6886 -1.2534 -2.2220 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720469737.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:05:47 Heat of formation + Delta-G solvation = -89.000103 kcal Electronic energy + Delta-G solvation = -18289.654970 eV Core-core repulsion = 15425.544237 eV Total energy + Delta-G solvation = -2864.110733 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.85177 -37.15624 -35.79181 -33.52120 -32.68087 -30.44257 -29.19075 -27.54039 -26.25637 -24.08681 -22.33400 -22.06168 -20.56590 -20.21311 -17.04274 -16.47989 -16.28767 -15.74479 -15.34802 -15.04734 -14.62225 -14.27336 -13.74834 -13.53336 -13.17181 -13.04315 -12.88049 -12.54650 -12.05788 -11.86869 -11.73645 -11.41702 -11.35534 -11.01106 -10.93581 -10.80164 -10.63473 -10.45219 -10.30627 -9.95865 -9.40944 -9.05335 -8.75019 -8.10341 -8.01325 -6.06480 -4.07445 3.35360 3.37649 3.41950 3.73347 3.94276 4.38790 4.69122 4.81517 4.85884 5.00485 5.13615 5.18851 5.29989 5.30279 5.38261 5.48105 5.56754 5.58777 5.65855 5.73781 5.77806 5.82477 5.98442 6.02777 6.08229 6.14606 6.19494 6.28846 6.32378 7.14029 7.16018 7.29592 7.48696 7.56211 7.84948 8.21763 8.67034 9.07014 9.57282 11.05197 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.027836 B = 0.004998 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.637958 B = 5600.953600 C = 5931.572030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.088 3.912 3 H 0.050 0.950 4 C -0.151 4.151 5 C 0.071 3.929 6 N -0.542 5.542 7 C 0.066 3.934 8 C 0.067 3.933 9 O -0.380 6.380 10 C 0.195 3.805 11 C -0.511 4.511 12 H 0.066 0.934 13 C 0.056 3.944 14 N -0.901 5.901 15 Si 0.907 3.093 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.275 1.275 19 C 0.033 3.967 20 C 0.062 3.938 21 O -0.395 6.395 22 H 0.067 0.933 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.016 0.984 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.035 0.965 32 H 0.038 0.962 33 H 0.002 0.998 34 H 0.002 0.998 35 H 0.264 0.736 36 H 0.042 0.958 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.791 13.000 -7.898 18.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.031 3.969 3 H 0.068 0.932 4 C -0.189 4.189 5 C -0.058 4.058 6 N -0.266 5.266 7 C -0.061 4.061 8 C -0.011 4.011 9 O -0.300 6.300 10 C 0.120 3.880 11 C -0.549 4.549 12 H 0.084 0.916 13 C -0.145 4.145 14 N -0.540 5.540 15 Si 0.734 3.266 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.200 1.200 19 C -0.094 4.094 20 C -0.015 4.015 21 O -0.315 6.315 22 H 0.086 0.914 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.106 0.894 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.034 0.966 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.020 0.980 34 H 0.019 0.981 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.890 12.347 -8.047 17.749 hybrid contribution 0.435 0.056 0.401 0.594 sum -9.455 12.403 -7.646 17.370 Atomic orbital electron populations 1.21877 0.93801 1.02781 1.01989 1.21852 0.94630 0.95261 0.85141 0.93171 1.22161 0.96738 1.02551 0.97491 1.21146 0.90762 0.95736 0.98177 1.58916 1.02341 1.63871 1.01512 1.22155 0.90590 0.95149 0.98176 1.22254 0.97845 0.86318 0.94686 1.87930 1.89465 1.16391 1.36166 1.20161 0.93611 0.88265 0.85927 1.21023 1.46125 0.92253 0.95491 0.91612 1.24941 0.95425 0.99416 0.94731 1.69958 1.47846 1.32924 1.03295 0.86410 0.78809 0.82958 0.78377 1.20041 1.21220 1.20026 1.22428 1.00971 0.97327 0.88716 1.22454 0.80384 0.97712 1.00918 1.88228 1.27951 1.78757 1.36603 0.91390 0.92196 0.91852 0.89363 0.90117 0.90272 0.96646 0.94121 0.90166 0.94720 0.94380 0.97993 0.98066 0.92696 0.93952 0.89519 0.90918 0.89309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.27 37.16 0.34 -1.09 16 2 C 0.09 1.05 2.78 -27.87 -0.08 0.97 16 3 H 0.05 0.58 6.61 -51.93 -0.34 0.24 16 4 C -0.15 -1.90 5.16 -27.14 -0.14 -2.04 16 5 C 0.07 0.96 4.81 -6.44 -0.03 0.93 16 6 N -0.54 -8.13 3.91 -239.61 -0.94 -9.06 16 7 C 0.07 0.99 5.42 -3.82 -0.02 0.97 16 8 C 0.07 1.25 6.11 37.16 0.23 1.48 16 9 O -0.38 -9.30 10.27 -35.23 -0.36 -9.67 16 10 C 0.19 5.44 5.69 36.01 0.20 5.64 16 11 C -0.51 -15.28 9.43 -34.44 -0.32 -15.61 16 12 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 15 Si 0.91 22.14 29.54 -169.99 -5.02 17.12 16 16 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 C 0.03 0.42 5.35 -4.57 -0.02 0.39 16 20 C 0.06 0.82 6.35 36.02 0.23 1.05 16 21 O -0.39 -5.47 10.53 -35.23 -0.37 -5.84 16 22 H 0.07 0.54 8.07 -51.93 -0.42 0.12 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.09 1.31 7.25 -51.93 -0.38 0.93 16 26 H 0.08 0.86 7.70 -51.93 -0.40 0.46 16 27 H 0.08 1.13 6.44 -51.93 -0.33 0.80 16 28 H 0.02 0.19 7.62 -51.93 -0.40 -0.21 16 29 H 0.04 0.51 7.98 -51.93 -0.41 0.10 16 30 H 0.08 1.17 7.44 -51.93 -0.39 0.79 16 31 H 0.03 0.64 6.62 -51.93 -0.34 0.29 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 34 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 36 H 0.04 0.51 6.85 -51.93 -0.36 0.15 16 37 H 0.09 1.03 7.43 -51.93 -0.39 0.64 16 38 H 0.07 1.13 7.26 -51.93 -0.38 0.75 16 39 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 306.93 15.07 4.63 4.63 Total: -1.00 -32.05 306.93 -7.65 -39.70 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -6.61 Total: -4.57 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: 0.29 Total: -5.76 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: -0.20 Total: -35.62 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.73 Total: -15.51 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.05 -7.65 -39.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720469737.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.297 kcal (2) G-P(sol) polarization free energy of solvation -32.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds