Wall clock time and date at job start Mon Mar 30 2020 21:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42902 * 113.99865 * 2 1 4 4 C 1.52993 * 109.47056 * 179.97438 * 3 2 1 5 5 O 1.42898 * 109.47159 * 65.00019 * 4 3 2 6 6 C 1.42898 * 114.00148 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47285 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47016 * 65.00142 * 7 6 5 9 9 C 1.47448 * 111.00041 * 69.15688 * 8 7 6 10 10 C 1.54321 * 107.23159 * 123.26094 * 9 8 7 11 11 C 1.55422 * 103.04810 * 22.28093 * 10 9 8 12 12 H 1.08998 * 111.00401 * 82.38939 * 11 10 9 13 13 C 1.50702 * 111.10698 * 206.29460 * 11 10 9 14 14 H 1.08002 * 119.99583 * 112.17314 * 13 11 10 15 15 C 1.37874 * 120.00111 * 292.17739 * 13 11 10 16 16 N 1.31512 * 119.99924 * 179.97438 * 15 13 11 17 17 Si 1.86798 * 119.99980 * 359.97438 * 15 13 11 18 18 H 1.48494 * 109.47240 * 90.00210 * 17 15 13 19 19 H 1.48499 * 109.46854 * 210.00218 * 17 15 13 20 20 H 1.48501 * 109.47143 * 329.99990 * 17 15 13 21 21 C 1.47846 * 111.00020 * 189.99819 * 8 7 6 22 22 H 1.09000 * 109.47031 * 60.00181 * 1 2 3 23 23 H 1.09002 * 109.46643 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47135 * 300.00039 * 1 2 3 25 25 H 1.09002 * 109.46937 * 59.99958 * 3 2 1 26 26 H 1.08998 * 109.46819 * 299.99802 * 3 2 1 27 27 H 1.08996 * 109.47037 * 305.00019 * 4 3 2 28 28 H 1.08997 * 109.47332 * 184.99702 * 4 3 2 29 29 H 1.09002 * 109.47310 * 59.99307 * 6 5 4 30 30 H 1.08997 * 109.47275 * 300.00052 * 6 5 4 31 31 H 1.09001 * 109.47391 * 304.99813 * 7 6 5 32 32 H 1.09001 * 109.47271 * 184.99726 * 7 6 5 33 33 H 1.08999 * 109.88737 * 242.66366 * 9 8 7 34 34 H 1.09000 * 109.88899 * 3.85249 * 9 8 7 35 35 H 1.09004 * 110.70290 * 140.66846 * 10 9 8 36 36 H 1.09004 * 110.70313 * 263.89914 * 10 9 8 37 37 H 0.97006 * 119.99818 * 179.97438 * 16 15 13 38 38 H 1.09002 * 110.37464 * 332.46590 * 21 8 7 39 39 H 1.08999 * 110.37318 * 94.69366 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9658 0.5793 -1.2201 6 6 5.3821 0.4187 -1.3215 7 6 5.7266 -0.2360 -2.6607 8 7 5.3587 0.6695 -3.7574 9 6 6.2380 1.8528 -3.7833 10 6 6.8853 1.9107 -5.1830 11 6 5.9028 1.0837 -6.0585 12 1 5.0565 1.6923 -6.3772 13 6 6.6092 0.4814 -7.2457 14 1 6.7393 -0.5888 -7.3107 15 6 7.0893 1.2965 -8.2487 16 7 7.7061 0.7708 -9.2844 17 14 6.8636 3.1474 -8.1365 18 1 8.0266 3.7461 -7.4335 19 1 6.7645 3.7177 -9.5040 20 1 5.6203 3.4497 -7.3828 21 6 5.4526 -0.0155 -5.0642 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.6886 1.8464 0.8900 26 1 1.6887 1.8463 -0.8900 27 1 3.8507 0.5686 0.8427 28 1 3.9785 2.1765 0.0902 29 1 5.7355 -0.2134 -0.5069 30 1 5.8638 1.3945 -1.2592 31 1 5.1750 -1.1708 -2.7608 32 1 6.7967 -0.4394 -2.7012 33 1 5.6514 2.7546 -3.6085 34 1 7.0111 1.7570 -3.0209 35 1 6.9448 2.9397 -5.5378 36 1 7.8725 1.4486 -5.1705 37 1 8.0436 1.3443 -9.9903 38 1 6.1926 -0.8147 -5.0215 39 1 4.4806 -0.4145 -5.3543 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397608917.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:05:24 Heat of formation + Delta-G solvation = -86.654091 kcal Electronic energy + Delta-G solvation = -17870.403704 eV Core-core repulsion = 15006.394702 eV Total energy + Delta-G solvation = -2864.009002 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.74867 -38.10240 -36.95027 -33.28850 -31.68352 -30.16461 -28.42431 -27.76894 -26.34018 -24.06048 -22.60682 -22.36483 -19.85938 -19.47430 -17.03353 -16.85146 -16.77363 -15.70691 -15.56275 -15.39087 -14.92725 -14.58521 -13.92186 -13.72432 -13.00306 -12.88073 -12.53948 -12.39309 -12.32329 -12.09912 -11.52716 -11.44547 -11.22228 -11.03770 -10.87476 -10.54205 -10.41904 -9.91883 -9.82327 -9.71846 -9.53436 -9.41703 -9.01810 -8.53503 -7.65298 -6.06291 -4.05568 3.30075 3.39214 3.43210 3.62993 3.74298 4.44120 4.56837 4.87616 5.03793 5.09994 5.18614 5.19985 5.24989 5.33493 5.37611 5.40071 5.51561 5.53624 5.58277 5.65564 5.71930 5.93664 6.00450 6.14080 6.31431 6.34629 6.60541 6.79844 6.88107 6.99354 7.07168 7.33015 7.49970 7.55098 7.74542 7.85208 8.53767 8.96892 9.56629 11.06789 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.037101 B = 0.004411 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.509095 B = 6346.541662 C = 6425.271307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.064 3.936 4 C 0.062 3.938 5 O -0.360 6.360 6 C 0.070 3.930 7 C 0.053 3.947 8 N -0.525 5.525 9 C 0.043 3.957 10 C -0.148 4.148 11 C 0.010 3.990 12 H 0.041 0.959 13 C -0.509 4.509 14 H 0.074 0.926 15 C 0.072 3.928 16 N -0.902 5.902 17 Si 0.879 3.121 18 H -0.278 1.278 19 H -0.293 1.293 20 H -0.263 1.263 21 C 0.058 3.942 22 H 0.042 0.958 23 H 0.085 0.915 24 H 0.037 0.963 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.079 0.921 32 H 0.047 0.953 33 H 0.063 0.937 34 H 0.040 0.960 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.263 0.737 38 H 0.041 0.959 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.677 2.123 19.780 21.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.012 4.012 4 C -0.015 4.015 5 O -0.278 6.278 6 C -0.007 4.007 7 C -0.076 4.076 8 N -0.250 5.250 9 C -0.085 4.085 10 C -0.187 4.187 11 C -0.009 4.009 12 H 0.059 0.941 13 C -0.547 4.547 14 H 0.092 0.908 15 C -0.130 4.130 16 N -0.540 5.540 17 Si 0.708 3.292 18 H -0.204 1.204 19 H -0.219 1.219 20 H -0.187 1.187 21 C -0.069 4.069 22 H 0.061 0.939 23 H 0.103 0.897 24 H 0.055 0.945 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.118 2.082 19.558 21.679 hybrid contribution 0.870 1.139 0.091 1.437 sum -8.248 3.222 19.649 21.552 Atomic orbital electron populations 1.22732 0.81294 1.02733 0.99762 1.87966 1.19405 1.27436 1.95344 1.22548 0.92641 0.85386 1.00672 1.22443 0.93234 0.97406 0.88432 1.88100 1.21676 1.81520 1.36547 1.22564 0.81988 0.99134 0.97047 1.22224 0.98275 0.96692 0.90419 1.63605 1.51039 1.06799 1.03509 1.22817 0.93946 0.94189 0.97502 1.23225 1.00642 1.00266 0.94536 1.20322 0.94432 0.92934 0.93221 0.94054 1.20935 1.36066 0.95347 1.02350 0.90828 1.24978 0.94477 0.98566 0.94965 1.69906 1.38673 1.35593 1.09874 0.86874 0.79343 0.86210 0.76806 1.20409 1.21934 1.18727 1.22979 0.99779 0.96946 0.87186 0.93910 0.89692 0.94457 0.92296 0.92151 0.93076 0.92216 0.93653 0.93582 0.90270 0.93490 0.91847 0.94166 0.93048 0.91612 0.92684 0.94046 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.84 10.67 -40.09 -0.43 -5.27 16 3 C 0.06 0.68 6.32 37.15 0.23 0.92 16 4 C 0.06 0.70 6.32 37.15 0.23 0.94 16 5 O -0.36 -5.47 10.25 -40.09 -0.41 -5.88 16 6 C 0.07 0.95 6.03 37.16 0.22 1.17 16 7 C 0.05 0.83 4.92 -3.83 -0.02 0.81 16 8 N -0.53 -9.93 5.11 -231.24 -1.18 -11.11 16 9 C 0.04 0.79 6.13 -2.83 -0.02 0.78 16 10 C -0.15 -3.21 5.42 -24.75 -0.13 -3.34 16 11 C 0.01 0.25 2.39 -89.48 -0.21 0.04 16 12 H 0.04 1.04 6.99 -51.93 -0.36 0.68 16 13 C -0.51 -14.41 9.08 -34.44 -0.31 -14.72 16 14 H 0.07 2.25 8.01 -52.49 -0.42 1.83 16 15 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 16 N -0.90 -27.78 13.96 55.43 0.77 -27.00 16 17 Si 0.88 21.95 24.95 -169.99 -4.24 17.71 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 20 H -0.26 -6.35 6.44 56.52 0.36 -5.99 16 21 C 0.06 1.23 6.12 -2.30 -0.01 1.22 16 22 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.60 7.00 -51.93 -0.36 0.23 16 31 H 0.08 1.25 8.08 -51.93 -0.42 0.83 16 32 H 0.05 0.71 7.98 -51.93 -0.41 0.29 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.04 0.65 6.91 -51.93 -0.36 0.29 16 35 H 0.05 1.11 5.72 -51.93 -0.30 0.82 16 36 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 37 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.04 0.88 7.68 -51.93 -0.40 0.48 16 39 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 LS Contribution 310.95 15.07 4.69 4.69 Total: -1.00 -32.12 310.95 -6.66 -38.78 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -6.85 Total: -3.10 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: 1.00 Total: -8.82 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: -0.41 Total: -38.11 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -0.84 Total: -11.15 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.24 Total: 17.71 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.12 -6.66 -38.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397608917.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.872 kcal (2) G-P(sol) polarization free energy of solvation -32.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds