Wall clock time and date at job start Mon Mar 30 2020 21:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 H 1.09001 * 109.46882 * 30.00382 * 3 2 1 5 5 C 1.52998 * 109.47307 * 269.99994 * 3 2 1 6 6 N 1.46900 * 109.47022 * 65.00111 * 5 3 2 7 7 C 1.46903 * 111.00006 * 66.04498 * 6 5 3 8 8 C 1.46899 * 111.00308 * 189.99780 * 6 5 3 9 9 C 1.50696 * 109.47323 * 169.99606 * 8 6 5 10 10 H 1.08001 * 120.00167 * 0.02562 * 9 8 6 11 11 C 1.37875 * 119.99881 * 179.97438 * 9 8 6 12 12 N 1.31515 * 120.00347 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99977 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46986 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.46893 * 120.00285 * 13 11 9 16 16 H 1.48493 * 109.47449 * 240.00319 * 13 11 9 17 17 C 1.53005 * 109.46802 * 150.00013 * 3 2 1 18 18 H 1.09000 * 110.43298 * 58.91031 * 17 3 2 19 19 C 1.54812 * 110.48777 * 296.22304 * 17 3 2 20 20 C 1.54995 * 102.08765 * 220.44307 * 19 17 3 21 21 O 1.44383 * 103.49439 * 37.02379 * 20 19 17 22 22 C 1.43742 * 106.97347 * 319.93804 * 21 20 19 23 23 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 24 24 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 25 25 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47009 * 184.99894 * 5 3 2 27 27 H 1.08995 * 109.47158 * 305.00200 * 5 3 2 28 28 H 1.09001 * 109.47063 * 59.99964 * 7 6 5 29 29 H 1.08998 * 109.46814 * 180.02562 * 7 6 5 30 30 H 1.09004 * 109.46925 * 300.00163 * 7 6 5 31 31 H 1.08995 * 109.47394 * 290.00270 * 8 6 5 32 32 H 1.09009 * 109.46589 * 50.00160 * 8 6 5 33 33 H 0.96998 * 119.99962 * 179.97438 * 12 11 9 34 34 H 1.08999 * 110.90776 * 338.63743 * 19 17 3 35 35 H 1.08998 * 110.90587 * 102.25218 * 19 17 3 36 36 H 1.09000 * 110.62217 * 278.52218 * 20 19 17 37 37 H 1.09004 * 110.61695 * 155.52832 * 20 19 17 38 38 H 1.08992 * 109.87957 * 267.09008 * 22 21 20 39 39 H 1.08997 * 109.87690 * 145.93447 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2176 1.7715 -1.4425 6 7 0.9128 1.9270 -2.0992 7 6 0.1420 3.0175 -1.4871 8 6 1.0727 2.1417 -3.5436 9 6 -0.2725 2.0515 -4.2168 10 1 -1.1578 1.8548 -3.6303 11 6 -0.3733 2.2211 -5.5814 12 7 0.7046 2.4611 -6.2956 13 14 -2.0409 2.1100 -6.4158 14 1 -3.0864 1.8343 -5.3978 15 1 -2.3403 3.3954 -7.0966 16 1 -2.0218 1.0128 -7.4161 17 6 3.3589 1.2633 0.7213 18 1 4.0307 0.5587 0.2310 19 6 3.1655 0.8857 2.2102 20 6 4.1714 1.8292 2.9175 21 8 4.0867 3.0489 2.1495 22 6 3.9904 2.6682 0.7667 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 2.7412 2.7275 -1.4437 27 1 2.8099 1.0321 -1.9815 28 1 0.6951 3.9518 -1.5830 29 1 -0.8195 3.1105 -1.9919 30 1 -0.0217 2.7988 -0.4318 31 1 1.5014 3.1283 -3.7191 32 1 1.7357 1.3793 -3.9530 33 1 0.6338 2.5801 -7.2556 34 1 2.1454 1.0914 2.5343 35 1 3.4243 -0.1588 2.3833 36 1 5.1797 1.4175 2.8740 37 1 3.8717 2.0046 3.9508 38 1 4.9840 2.6426 0.3194 39 1 3.3585 3.3762 0.2306 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595347314.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:08:12 Heat of formation + Delta-G solvation = -87.596428 kcal Electronic energy + Delta-G solvation = -18591.483504 eV Core-core repulsion = 15727.433639 eV Total energy + Delta-G solvation = -2864.049865 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.83171 -37.88067 -35.77306 -33.02575 -32.39033 -30.15321 -27.81145 -27.16169 -25.99013 -24.70767 -23.13315 -21.90895 -20.41280 -19.88793 -17.10442 -16.44160 -16.31928 -15.58774 -15.20270 -14.99135 -14.60322 -14.39261 -13.87161 -13.73590 -13.09109 -13.00153 -12.71274 -12.03928 -11.91956 -11.62394 -11.52347 -11.36740 -11.12126 -11.03381 -10.91280 -10.80722 -10.59926 -10.55258 -10.16430 -9.94679 -9.72380 -9.39413 -8.94003 -8.45199 -7.22736 -6.04165 -4.05550 3.29791 3.37277 3.41541 3.85201 4.01029 4.37948 4.51106 4.70421 4.96673 5.05253 5.13203 5.23768 5.29651 5.32503 5.50307 5.62307 5.65745 5.72309 5.75345 5.81814 5.91104 5.96297 6.02054 6.05965 6.16135 6.28772 6.39910 6.49186 6.68464 6.78852 7.26376 7.31721 7.61311 7.77175 8.06241 8.15722 8.51435 9.01835 9.58724 11.06858 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.040857 B = 0.005179 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.155924 B = 5404.973857 C = 5734.235563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.378 6.378 3 C 0.106 3.894 4 H 0.060 0.940 5 C 0.029 3.971 6 N -0.535 5.535 7 C 0.030 3.970 8 C 0.193 3.807 9 C -0.506 4.506 10 H 0.063 0.937 11 C 0.055 3.945 12 N -0.898 5.898 13 Si 0.897 3.103 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.284 1.284 17 C -0.120 4.120 18 H 0.091 0.909 19 C -0.141 4.141 20 C 0.044 3.956 21 O -0.380 6.380 22 C 0.051 3.949 23 H 0.023 0.977 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.031 0.969 27 H 0.076 0.924 28 H 0.012 0.988 29 H 0.076 0.924 30 H 0.042 0.958 31 H -0.009 1.009 32 H 0.030 0.970 33 H 0.261 0.739 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.517 -1.983 15.847 16.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.297 6.297 3 C 0.047 3.953 4 H 0.078 0.922 5 C -0.100 4.100 6 N -0.260 5.260 7 C -0.118 4.118 8 C 0.068 3.932 9 C -0.545 4.545 10 H 0.081 0.919 11 C -0.146 4.146 12 N -0.538 5.538 13 Si 0.725 3.275 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.210 1.210 17 C -0.139 4.139 18 H 0.110 0.890 19 C -0.179 4.179 20 C -0.033 4.033 21 O -0.300 6.300 22 C -0.026 4.026 23 H 0.042 0.958 24 H 0.099 0.901 25 H 0.091 0.909 26 H 0.049 0.951 27 H 0.094 0.906 28 H 0.031 0.969 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.009 0.991 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.108 0.892 38 H 0.081 0.919 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.418 -2.337 15.790 16.562 hybrid contribution -0.540 0.680 -0.901 1.251 sum 3.878 -1.657 14.889 15.475 Atomic orbital electron populations 1.22931 0.80737 1.01945 1.01239 1.87766 1.20234 1.26586 1.95067 1.22091 0.92679 0.85614 0.94906 0.92177 1.22733 0.93128 0.99441 0.94685 1.62119 1.14400 1.42839 1.06592 1.22332 0.99898 0.91896 0.97702 1.19743 0.97724 0.95261 0.80501 1.21177 0.93427 1.47864 0.91997 0.91862 1.24990 0.96772 0.95429 0.97431 1.69968 1.27948 1.49367 1.06534 0.86452 0.84032 0.77530 0.79462 1.19677 1.21143 1.20999 1.22611 0.97465 0.97519 0.96326 0.89046 1.23088 1.00403 1.00356 0.94017 1.23591 0.98488 0.84987 0.96235 1.88870 1.95002 1.28747 1.17333 1.23286 1.00337 0.95433 0.83525 0.95835 0.90103 0.90926 0.95088 0.90557 0.96927 0.90510 0.93882 0.99147 0.95183 0.92976 0.90567 0.89981 0.92274 0.89185 0.91880 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.38 101.05 1.05 1.48 16 2 O -0.38 -6.26 10.12 -35.23 -0.36 -6.62 16 3 C 0.11 1.61 1.50 -26.73 -0.04 1.57 16 4 H 0.06 0.92 5.97 -51.93 -0.31 0.61 16 5 C 0.03 0.52 4.46 -3.82 -0.02 0.50 16 6 N -0.54 -11.31 2.99 -244.37 -0.73 -12.04 16 7 C 0.03 0.58 8.47 60.07 0.51 1.09 16 8 C 0.19 5.00 4.72 -4.98 -0.02 4.98 16 9 C -0.51 -14.09 8.46 -34.44 -0.29 -14.38 16 10 H 0.06 1.73 7.12 -52.49 -0.37 1.36 16 11 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 12 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 13 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 14 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 C -0.12 -1.52 2.85 -89.09 -0.25 -1.77 16 18 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 19 C -0.14 -1.53 6.50 -24.72 -0.16 -1.69 16 20 C 0.04 0.44 7.72 38.21 0.29 0.74 16 21 O -0.38 -5.03 11.52 -35.23 -0.41 -5.44 16 22 C 0.05 0.64 6.84 37.73 0.26 0.89 16 23 H 0.02 0.31 8.08 -51.93 -0.42 -0.11 16 24 H 0.08 1.44 5.67 -51.93 -0.29 1.15 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.03 0.54 6.39 -51.93 -0.33 0.20 16 27 H 0.08 1.44 7.93 -51.93 -0.41 1.03 16 28 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.08 1.56 6.76 -51.93 -0.35 1.21 16 30 H 0.04 0.70 6.04 -51.93 -0.31 0.39 16 31 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 32 H 0.03 0.84 7.93 -51.92 -0.41 0.43 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.08 0.86 7.86 -51.93 -0.41 0.45 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 1.17 6.37 -51.93 -0.33 0.84 16 LS Contribution 305.68 15.07 4.61 4.61 Total: -1.00 -30.34 305.68 -6.42 -36.76 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -6.47 Total: -2.67 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: 1.23 Total: -5.14 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.01 Total: -38.02 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -0.76 Total: -12.06 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.34 -6.42 -36.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595347314.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.841 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds