Wall clock time and date at job start Mon Mar 30 2020 21:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42905 * 113.99960 * 2 1 4 4 H 1.08998 * 109.47155 * 337.00485 * 3 2 1 5 5 C 1.52996 * 109.47006 * 97.00936 * 3 2 1 6 6 N 1.46903 * 109.47058 * 296.71756 * 5 3 2 7 7 C 1.46900 * 110.99906 * 164.02402 * 6 5 3 8 8 C 1.46892 * 110.99960 * 287.97681 * 6 5 3 9 9 C 1.50698 * 109.47155 * 170.00069 * 8 6 5 10 10 H 1.08010 * 119.99836 * 0.02562 * 9 8 6 11 11 C 1.37880 * 120.00330 * 180.02562 * 9 8 6 12 12 N 1.31512 * 119.99925 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00003 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47255 * 89.99765 * 13 11 9 15 15 H 1.48509 * 109.47080 * 209.99656 * 13 11 9 16 16 H 1.48494 * 109.47168 * 329.99669 * 13 11 9 17 17 C 1.52997 * 109.46961 * 217.00945 * 3 2 1 18 18 H 1.09003 * 110.83124 * 187.75425 * 17 3 2 19 19 C 1.54806 * 110.91163 * 64.10652 * 17 3 2 20 20 C 1.54102 * 104.19287 * 220.92009 * 19 17 3 21 21 O 1.43744 * 107.29099 * 357.97015 * 20 19 17 22 22 C 1.44380 * 106.97581 * 26.50930 * 21 20 19 23 23 H 1.09008 * 109.47502 * 63.55147 * 1 2 3 24 24 H 1.09002 * 109.47414 * 183.55165 * 1 2 3 25 25 H 1.08999 * 109.47413 * 303.55521 * 1 2 3 26 26 H 1.09006 * 109.47306 * 56.71906 * 5 3 2 27 27 H 1.08998 * 109.47032 * 176.71800 * 5 3 2 28 28 H 1.09002 * 109.47004 * 65.75269 * 7 6 5 29 29 H 1.09000 * 109.47416 * 185.75652 * 7 6 5 30 30 H 1.09007 * 109.47356 * 305.75754 * 7 6 5 31 31 H 1.09006 * 109.47433 * 289.99838 * 8 6 5 32 32 H 1.09001 * 109.47435 * 49.99920 * 8 6 5 33 33 H 0.96994 * 120.00379 * 180.02562 * 12 11 9 34 34 H 1.09003 * 110.48931 * 102.24304 * 19 17 3 35 35 H 1.09005 * 110.48486 * 339.59591 * 19 17 3 36 36 H 1.09002 * 109.87860 * 117.38980 * 20 19 17 37 37 H 1.08998 * 109.87741 * 238.54686 * 20 19 17 38 38 H 1.09007 * 110.61694 * 78.44499 * 22 21 20 39 39 H 1.09000 * 110.62262 * 201.27910 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2937 2.0222 -0.4015 5 6 2.3784 1.6998 1.4317 6 7 1.1588 1.7788 2.2469 7 6 1.4825 1.7779 3.6798 8 6 0.3613 2.9590 1.8880 9 6 -0.9853 2.8784 2.5597 10 1 -1.2246 2.0349 3.1904 11 6 -1.9120 3.8814 2.3690 12 7 -1.6205 4.9087 1.6014 13 14 -3.5809 3.7819 3.2021 14 1 -3.5106 4.4398 4.5316 15 1 -4.5950 4.4692 2.3627 16 1 -3.9640 2.3575 3.3743 17 6 3.2699 1.3029 -0.8683 18 1 3.8063 2.2473 -0.7760 19 6 2.9208 1.0081 -2.3474 20 6 4.0394 0.0581 -2.8175 21 8 4.9469 -0.1116 -1.7158 22 6 4.1882 0.1077 -0.5071 23 1 -0.3634 0.4577 -0.9201 24 1 -0.3634 -1.0257 0.0637 25 1 -0.3634 0.5680 0.8564 26 1 3.0496 0.9515 1.8535 27 1 2.8745 2.6703 1.4251 28 1 2.0265 2.6887 3.9299 29 1 0.5610 1.7339 4.2604 30 1 2.1002 0.9104 3.9123 31 1 0.8781 3.8606 2.2172 32 1 0.2267 2.9916 0.8069 33 1 -2.2721 5.6146 1.4675 34 1 2.9306 1.9279 -2.9323 35 1 1.9493 0.5191 -2.4200 36 1 3.6136 -0.9052 -3.0987 37 1 4.5647 0.4955 -3.6665 38 1 3.5939 -0.7726 -0.2619 39 1 4.8498 0.3651 0.3201 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595347315.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:08:15 Heat of formation + Delta-G solvation = -91.000158 kcal Electronic energy + Delta-G solvation = -18774.881858 eV Core-core repulsion = 15910.684396 eV Total energy + Delta-G solvation = -2864.197462 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.63681 -37.67832 -35.74159 -32.86722 -32.38143 -29.96841 -27.76948 -27.24813 -25.90624 -24.21464 -23.28855 -21.94528 -20.28314 -19.79073 -16.65724 -16.49780 -16.15056 -15.74954 -14.92204 -14.71249 -14.65206 -14.15454 -13.65190 -13.52765 -13.36606 -12.99491 -12.47385 -12.05594 -12.03301 -11.57649 -11.49142 -11.37291 -11.01729 -10.91026 -10.77900 -10.64493 -10.59789 -10.46486 -10.19582 -9.75621 -9.49610 -9.32776 -8.92918 -8.48578 -7.23339 -6.08867 -4.10489 3.27416 3.34178 3.37921 3.98686 4.30845 4.37480 4.61126 4.78815 4.97374 5.14393 5.25510 5.31900 5.43564 5.57341 5.69277 5.76057 5.84728 5.90763 5.95579 6.00634 6.04263 6.05812 6.13183 6.20348 6.28586 6.34318 6.44504 6.70661 6.75230 6.95104 7.20205 7.28373 7.72275 7.77539 8.01906 8.14796 8.49178 8.97858 9.54440 11.01945 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.035764 B = 0.005718 C = 0.005488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.726222 B = 4895.781849 C = 5101.002625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.380 6.380 3 C 0.106 3.894 4 H 0.071 0.929 5 C 0.037 3.963 6 N -0.538 5.538 7 C 0.041 3.959 8 C 0.189 3.811 9 C -0.508 4.508 10 H 0.063 0.937 11 C 0.056 3.944 12 N -0.898 5.898 13 Si 0.896 3.104 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.273 1.273 17 C -0.121 4.121 18 H 0.091 0.909 19 C -0.149 4.149 20 C 0.052 3.948 21 O -0.387 6.387 22 C 0.057 3.943 23 H 0.025 0.975 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.031 0.969 28 H 0.011 0.989 29 H 0.072 0.928 30 H 0.044 0.956 31 H -0.010 1.010 32 H 0.029 0.971 33 H 0.261 0.739 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.056 0.944 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.211 -7.368 -5.354 12.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.298 6.298 3 C 0.048 3.952 4 H 0.089 0.911 5 C -0.092 4.092 6 N -0.262 5.262 7 C -0.107 4.107 8 C 0.064 3.936 9 C -0.546 4.546 10 H 0.082 0.918 11 C -0.145 4.145 12 N -0.538 5.538 13 Si 0.724 3.276 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.197 1.197 17 C -0.140 4.140 18 H 0.109 0.891 19 C -0.187 4.187 20 C -0.025 4.025 21 O -0.306 6.306 22 C -0.019 4.019 23 H 0.044 0.956 24 H 0.087 0.913 25 H 0.102 0.898 26 H 0.085 0.915 27 H 0.049 0.951 28 H 0.029 0.971 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.007 0.993 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.172 -7.839 -5.535 12.605 hybrid contribution -0.945 1.226 0.562 1.647 sum 7.227 -6.613 -4.973 10.986 Atomic orbital electron populations 1.22901 0.80387 1.01783 1.01658 1.87693 1.20423 1.26672 1.95054 1.21896 0.93437 0.85999 0.93906 0.91123 1.22547 0.93379 0.98980 0.94309 1.62079 1.16565 1.44373 1.03200 1.22169 1.00570 0.97889 0.90095 1.19811 0.92254 0.84907 0.96649 1.21149 0.98274 1.06178 1.29019 0.91837 1.24988 0.98788 0.95314 0.95444 1.69951 1.35514 1.10118 1.38199 0.86525 0.83555 0.78245 0.79277 1.20734 1.21270 1.19730 1.22904 0.96485 1.00002 0.94602 0.89065 1.22933 0.99972 1.00080 0.95696 1.23078 0.90709 0.98467 0.90283 1.88806 1.34150 1.92341 1.15278 1.23554 0.93402 0.97493 0.87482 0.95593 0.91252 0.89813 0.91544 0.95138 0.97066 0.90911 0.93699 0.99266 0.95329 0.92898 0.90785 0.90059 0.92620 0.90420 0.90555 0.89457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.65 101.05 1.08 1.58 16 2 O -0.38 -6.50 8.49 -35.23 -0.30 -6.80 16 3 C 0.11 1.77 1.95 -26.73 -0.05 1.71 16 4 H 0.07 1.32 6.10 -51.93 -0.32 1.01 16 5 C 0.04 0.65 4.50 -3.82 -0.02 0.64 16 6 N -0.54 -11.23 3.31 -244.37 -0.81 -12.04 16 7 C 0.04 0.79 9.32 60.06 0.56 1.35 16 8 C 0.19 4.72 4.01 -4.98 -0.02 4.70 16 9 C -0.51 -13.72 8.54 -34.44 -0.29 -14.01 16 10 H 0.06 1.71 7.10 -52.48 -0.37 1.33 16 11 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 12 N -0.90 -26.04 13.29 55.43 0.74 -25.30 16 13 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 17 C -0.12 -1.68 2.97 -88.62 -0.26 -1.95 16 18 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 19 C -0.15 -1.87 6.51 -25.20 -0.16 -2.03 16 20 C 0.05 0.62 7.70 37.73 0.29 0.91 16 21 O -0.39 -5.56 11.52 -35.23 -0.41 -5.96 16 22 C 0.06 0.78 6.57 38.21 0.25 1.03 16 23 H 0.03 0.42 8.14 -51.92 -0.42 0.00 16 24 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.08 1.71 6.25 -51.93 -0.32 1.38 16 26 H 0.07 1.08 7.51 -51.93 -0.39 0.69 16 27 H 0.03 0.54 8.05 -51.93 -0.42 0.13 16 28 H 0.01 0.21 8.13 -51.93 -0.42 -0.21 16 29 H 0.07 1.48 6.91 -51.93 -0.36 1.12 16 30 H 0.04 0.74 7.96 -51.92 -0.41 0.33 16 31 H -0.01 -0.29 8.11 -51.93 -0.42 -0.71 16 32 H 0.03 0.75 6.36 -51.93 -0.33 0.42 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 1.07 7.49 -51.93 -0.39 0.68 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 1.11 7.00 -51.92 -0.36 0.75 16 39 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 307.92 15.07 4.64 4.64 Total: -1.00 -29.04 307.92 -6.50 -35.54 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -6.61 Total: -1.57 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 1.27 Total: -4.62 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: -0.07 Total: -37.34 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -0.71 Total: -12.77 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.04 -6.50 -35.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595347315.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.459 kcal (2) G-P(sol) polarization free energy of solvation -29.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds