Wall clock time and date at job start Mon Mar 30 2020 21:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42905 * 113.99960 * 2 1 4 4 H 1.08998 * 109.47155 * 337.00485 * 3 2 1 5 5 C 1.52996 * 109.47006 * 97.00936 * 3 2 1 6 6 N 1.46903 * 109.47058 * 296.71756 * 5 3 2 7 7 C 1.46900 * 110.99906 * 164.02402 * 6 5 3 8 8 C 1.46892 * 110.99960 * 287.97681 * 6 5 3 9 9 C 1.50698 * 109.47155 * 170.00069 * 8 6 5 10 10 H 1.08010 * 119.99836 * 0.02562 * 9 8 6 11 11 C 1.37880 * 120.00330 * 180.02562 * 9 8 6 12 12 N 1.31512 * 119.99925 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00003 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47255 * 89.99765 * 13 11 9 15 15 H 1.48509 * 109.47080 * 209.99656 * 13 11 9 16 16 H 1.48494 * 109.47168 * 329.99669 * 13 11 9 17 17 C 1.52997 * 109.46961 * 217.00945 * 3 2 1 18 18 H 1.09003 * 110.83124 * 187.75425 * 17 3 2 19 19 C 1.54806 * 110.91163 * 64.10652 * 17 3 2 20 20 C 1.54102 * 104.19287 * 220.92009 * 19 17 3 21 21 O 1.43744 * 107.29099 * 357.97015 * 20 19 17 22 22 C 1.44380 * 106.97581 * 26.50930 * 21 20 19 23 23 H 1.09008 * 109.47502 * 63.55147 * 1 2 3 24 24 H 1.09002 * 109.47414 * 183.55165 * 1 2 3 25 25 H 1.08999 * 109.47413 * 303.55521 * 1 2 3 26 26 H 1.09006 * 109.47306 * 56.71906 * 5 3 2 27 27 H 1.08998 * 109.47032 * 176.71800 * 5 3 2 28 28 H 1.09002 * 109.47004 * 65.75269 * 7 6 5 29 29 H 1.09000 * 109.47416 * 185.75652 * 7 6 5 30 30 H 1.09007 * 109.47356 * 305.75754 * 7 6 5 31 31 H 1.09006 * 109.47433 * 289.99838 * 8 6 5 32 32 H 1.09001 * 109.47435 * 49.99920 * 8 6 5 33 33 H 0.96994 * 120.00379 * 180.02562 * 12 11 9 34 34 H 1.09003 * 110.48931 * 102.24304 * 19 17 3 35 35 H 1.09005 * 110.48486 * 339.59591 * 19 17 3 36 36 H 1.09002 * 109.87860 * 117.38980 * 20 19 17 37 37 H 1.08998 * 109.87741 * 238.54686 * 20 19 17 38 38 H 1.09007 * 110.61694 * 78.44499 * 22 21 20 39 39 H 1.09000 * 110.62262 * 201.27910 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2937 2.0222 -0.4015 5 6 2.3784 1.6998 1.4317 6 7 1.1588 1.7788 2.2469 7 6 1.4825 1.7779 3.6798 8 6 0.3613 2.9590 1.8880 9 6 -0.9853 2.8784 2.5597 10 1 -1.2246 2.0349 3.1904 11 6 -1.9120 3.8814 2.3690 12 7 -1.6205 4.9087 1.6014 13 14 -3.5809 3.7819 3.2021 14 1 -3.5106 4.4398 4.5316 15 1 -4.5950 4.4692 2.3627 16 1 -3.9640 2.3575 3.3743 17 6 3.2699 1.3029 -0.8683 18 1 3.8063 2.2473 -0.7760 19 6 2.9208 1.0081 -2.3474 20 6 4.0394 0.0581 -2.8175 21 8 4.9469 -0.1116 -1.7158 22 6 4.1882 0.1077 -0.5071 23 1 -0.3634 0.4577 -0.9201 24 1 -0.3634 -1.0257 0.0637 25 1 -0.3634 0.5680 0.8564 26 1 3.0496 0.9515 1.8535 27 1 2.8745 2.6703 1.4251 28 1 2.0265 2.6887 3.9299 29 1 0.5610 1.7339 4.2604 30 1 2.1002 0.9104 3.9123 31 1 0.8781 3.8606 2.2172 32 1 0.2267 2.9916 0.8069 33 1 -2.2721 5.6146 1.4675 34 1 2.9306 1.9279 -2.9323 35 1 1.9493 0.5191 -2.4200 36 1 3.6136 -0.9052 -3.0987 37 1 4.5647 0.4955 -3.6665 38 1 3.5939 -0.7726 -0.2619 39 1 4.8498 0.3651 0.3201 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595347315.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:08:14 Heat of formation + Delta-G solvation = -110.151370 kcal Electronic energy + Delta-G solvation = -18775.712316 eV Core-core repulsion = 15910.684396 eV Total energy + Delta-G solvation = -2865.027921 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.81263 -39.03887 -37.34659 -34.70280 -33.81545 -31.13813 -29.45326 -28.79737 -27.33644 -25.86883 -24.76196 -23.19657 -21.69780 -21.19703 -18.61150 -17.75850 -17.37445 -17.03840 -16.69647 -16.18694 -15.91972 -15.61726 -15.25453 -14.95662 -14.70715 -14.42471 -13.96971 -13.67885 -13.49835 -13.16717 -12.95712 -12.75866 -12.60330 -12.43380 -12.34531 -12.17401 -11.99556 -11.92600 -11.57204 -11.31734 -11.28099 -10.61699 -10.55450 -10.40196 -8.94970 -8.20679 -6.29805 1.41182 1.41654 1.53162 2.39838 2.83647 3.05798 3.12503 3.32261 3.54267 3.89086 4.03255 4.17672 4.24613 4.33271 4.43552 4.52034 4.53328 4.61938 4.69962 4.75570 4.79970 4.84110 4.89533 4.91065 5.00351 5.09027 5.10448 5.18854 5.24230 5.26562 5.29817 5.65630 5.92895 6.05508 6.28839 6.38910 6.63128 6.86732 7.40116 8.90352 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.035764 B = 0.005718 C = 0.005488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.726222 B = 4895.781849 C = 5101.002625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.113 3.887 4 H 0.044 0.956 5 C 0.036 3.964 6 N -0.542 5.542 7 C 0.042 3.958 8 C 0.208 3.792 9 C -0.518 4.518 10 H 0.063 0.937 11 C 0.004 3.996 12 N -0.934 5.934 13 Si 0.964 3.036 14 H -0.275 1.275 15 H -0.284 1.284 16 H -0.264 1.264 17 C -0.119 4.119 18 H 0.098 0.902 19 C -0.147 4.147 20 C 0.050 3.950 21 O -0.400 6.400 22 C 0.061 3.939 23 H 0.028 0.972 24 H 0.092 0.908 25 H 0.049 0.951 26 H 0.088 0.912 27 H 0.029 0.971 28 H 0.008 0.992 29 H 0.058 0.942 30 H 0.077 0.923 31 H -0.044 1.044 32 H 0.009 0.991 33 H 0.263 0.737 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.098 0.902 38 H 0.068 0.932 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.535 -8.497 -5.362 13.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.297 6.297 3 C 0.054 3.946 4 H 0.062 0.938 5 C -0.092 4.092 6 N -0.266 5.266 7 C -0.106 4.106 8 C 0.082 3.918 9 C -0.556 4.556 10 H 0.081 0.919 11 C -0.194 4.194 12 N -0.575 5.575 13 Si 0.789 3.211 14 H -0.201 1.201 15 H -0.209 1.209 16 H -0.188 1.188 17 C -0.138 4.138 18 H 0.116 0.884 19 C -0.185 4.185 20 C -0.027 4.027 21 O -0.320 6.320 22 C -0.015 4.015 23 H 0.047 0.953 24 H 0.111 0.889 25 H 0.068 0.932 26 H 0.107 0.893 27 H 0.047 0.953 28 H 0.027 0.973 29 H 0.076 0.924 30 H 0.096 0.904 31 H -0.026 1.026 32 H 0.027 0.973 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.116 0.884 38 H 0.086 0.914 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.512 -8.988 -5.539 13.561 hybrid contribution -0.997 1.553 0.550 1.926 sum 7.514 -7.435 -4.989 11.689 Atomic orbital electron populations 1.22823 0.80479 1.02666 1.00250 1.87695 1.20274 1.26767 1.94984 1.21818 0.94003 0.85171 0.93623 0.93803 1.22660 0.92332 0.99610 0.94641 1.62027 1.18106 1.41865 1.04590 1.22193 1.00381 0.99230 0.88805 1.19426 0.92118 0.85139 0.95087 1.21431 0.99234 1.06069 1.28899 0.91924 1.25846 1.02641 0.94894 0.96006 1.70073 1.36891 1.10918 1.39600 0.85462 0.78827 0.78597 0.78233 1.20086 1.20921 1.18804 1.22874 0.95179 1.00699 0.95044 0.88408 1.22933 0.99878 1.00831 0.94868 1.23222 0.90401 0.98827 0.90203 1.88795 1.34896 1.92436 1.15865 1.23513 0.93377 0.96727 0.87873 0.95335 0.88917 0.93182 0.89336 0.95268 0.97328 0.92364 0.90425 1.02629 0.97285 0.92771 0.89584 0.90858 0.91911 0.88376 0.91417 0.88242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.16 10.65 113.37 1.21 2.37 16 2 O -0.38 -12.63 8.49 -148.98 -1.27 -13.90 16 3 C 0.11 3.70 1.95 30.59 0.06 3.76 16 4 H 0.04 1.69 6.10 -2.39 -0.01 1.67 16 5 C 0.04 1.25 4.50 86.30 0.39 1.64 16 6 N -0.54 -22.66 3.31 -927.05 -3.07 -25.72 16 7 C 0.04 1.59 9.32 127.69 1.19 2.78 16 8 C 0.21 10.73 4.01 85.56 0.34 11.08 16 9 C -0.52 -28.44 8.54 25.60 0.22 -28.22 16 10 H 0.06 3.38 7.10 -2.91 -0.02 3.36 16 11 C 0.00 0.23 5.46 84.66 0.46 0.70 16 12 N -0.93 -55.16 13.29 21.45 0.28 -54.88 16 13 Si 0.96 43.43 29.54 68.60 2.03 45.45 16 14 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 15 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 16 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 17 C -0.12 -3.16 2.97 -9.50 -0.03 -3.19 16 18 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 19 C -0.15 -3.47 6.51 31.58 0.21 -3.27 16 20 C 0.05 1.08 7.70 72.35 0.56 1.64 16 21 O -0.40 -10.64 11.52 -148.98 -1.72 -12.36 16 22 C 0.06 1.56 6.57 72.66 0.48 2.04 16 23 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 24 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 25 H 0.05 2.06 6.25 -2.39 -0.01 2.04 16 26 H 0.09 2.69 7.51 -2.38 -0.02 2.68 16 27 H 0.03 1.03 8.05 -2.39 -0.02 1.01 16 28 H 0.01 0.31 8.13 -2.39 -0.02 0.29 16 29 H 0.06 2.34 6.91 -2.39 -0.02 2.32 16 30 H 0.08 2.40 7.96 -2.38 -0.02 2.38 16 31 H -0.04 -2.51 8.11 -2.38 -0.02 -2.53 16 32 H 0.01 0.50 6.36 -2.39 -0.02 0.49 16 33 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 34 H 0.09 1.80 8.14 -2.39 -0.02 1.79 16 35 H 0.07 1.84 7.49 -2.38 -0.02 1.83 16 36 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.07 1.85 7.00 -2.38 -0.02 1.83 16 39 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -62.03 307.92 2.35 -59.68 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 1.00 Total: 10.39 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: 5.08 Total: -8.67 kcal Atomic # 7 Polarization: -77.82 SS G_CDS: -2.78 Total: -80.60 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -2.98 Total: -26.26 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -62.03 2.35 -59.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595347315.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.471 kcal (2) G-P(sol) polarization free energy of solvation -62.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds