Wall clock time and date at job start Mon Mar 30 2020 21:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42892 * 114.00299 * 2 1 4 4 H 1.09004 * 109.47168 * 34.42960 * 3 2 1 5 5 C 1.52994 * 109.47225 * 154.43204 * 3 2 1 6 6 N 1.46899 * 109.47206 * 294.19147 * 5 3 2 7 7 C 1.46899 * 111.00127 * 160.09769 * 6 5 3 8 8 C 1.46895 * 111.00346 * 284.05509 * 6 5 3 9 9 C 1.50703 * 109.47269 * 169.99748 * 8 6 5 10 10 H 1.07996 * 120.00110 * 0.02562 * 9 8 6 11 11 C 1.37877 * 119.99660 * 180.02562 * 9 8 6 12 12 N 1.31511 * 120.00179 * 359.97438 * 11 9 8 13 13 Si 1.86809 * 119.99647 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47075 * 59.99749 * 13 11 9 15 15 H 1.48497 * 109.46768 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.46809 * 299.99684 * 13 11 9 17 17 C 1.53001 * 109.47379 * 274.43166 * 3 2 1 18 18 H 1.09001 * 110.45698 * 58.82598 * 17 3 2 19 19 C 1.54512 * 110.51275 * 181.42964 * 17 3 2 20 20 C 1.54485 * 104.05973 * 118.64752 * 19 17 3 21 21 O 1.44422 * 104.80499 * 23.97687 * 20 19 17 22 22 C 1.44644 * 105.37094 * 319.56947 * 21 20 19 23 23 H 1.09005 * 109.47214 * 304.97899 * 1 2 3 24 24 H 1.09001 * 109.47086 * 64.97492 * 1 2 3 25 25 H 1.09003 * 109.47557 * 184.97871 * 1 2 3 26 26 H 1.09005 * 109.47487 * 174.18928 * 5 3 2 27 27 H 1.09003 * 109.47620 * 54.19484 * 5 3 2 28 28 H 1.09004 * 109.47624 * 189.01931 * 7 6 5 29 29 H 1.09007 * 109.47377 * 309.01657 * 7 6 5 30 30 H 1.08997 * 109.47487 * 69.01917 * 7 6 5 31 31 H 1.09003 * 109.47007 * 49.99943 * 8 6 5 32 32 H 1.09005 * 109.47171 * 289.99631 * 8 6 5 33 33 H 0.97002 * 119.99417 * 179.97438 * 12 11 9 34 34 H 1.08994 * 110.51019 * 237.28661 * 19 17 3 35 35 H 1.08995 * 110.50825 * 359.86822 * 19 17 3 36 36 H 1.08993 * 110.37120 * 142.81167 * 20 19 17 37 37 H 1.09005 * 110.36967 * 265.03516 * 20 19 17 38 38 H 1.09008 * 110.33581 * 281.59356 * 22 21 20 39 39 H 1.08995 * 110.50819 * 159.18571 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3837 1.9821 0.5811 5 6 3.4064 1.2420 0.6225 6 7 3.2934 0.8852 2.0431 7 6 4.5651 0.3590 2.5565 8 6 2.8386 2.0327 2.8395 9 6 2.4996 1.5734 4.2342 10 1 2.6113 0.5332 4.5023 11 6 2.0469 2.4812 5.1680 12 7 1.9114 3.7480 4.8417 13 14 1.6274 1.9120 6.8971 14 1 2.8330 1.3183 7.5289 15 1 1.1664 3.0718 7.7017 16 1 0.5487 0.8933 6.8347 17 6 2.1159 1.8166 -1.4382 18 1 1.1312 1.8486 -1.9045 19 6 2.7750 3.2138 -1.4690 20 6 4.0575 3.0053 -2.3047 21 8 3.7804 1.8484 -3.1236 22 6 3.0752 0.9272 -2.2598 23 1 -0.3634 0.5892 0.8421 24 1 -0.3633 0.4347 -0.9312 25 1 -0.3634 -1.0238 0.0892 26 1 3.8903 2.2143 0.5295 27 1 4.0012 0.4892 0.1051 28 1 4.4137 -0.0448 3.5576 29 1 4.9244 -0.4309 1.8968 30 1 5.3011 1.1619 2.5961 31 1 1.9540 2.4691 2.3757 32 1 3.6309 2.7799 2.8856 33 1 1.5925 4.3865 5.4986 34 1 2.1172 3.9358 -1.9528 35 1 3.0235 3.5412 -0.4595 36 1 4.2481 3.8767 -2.9310 37 1 4.9092 2.8147 -1.6516 38 1 3.7756 0.4146 -1.6004 39 1 2.5112 0.2055 -2.8505 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595347316.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:08:18 Heat of formation + Delta-G solvation = -86.386128 kcal Electronic energy + Delta-G solvation = -18813.206021 eV Core-core repulsion = 15949.208639 eV Total energy + Delta-G solvation = -2863.997382 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -39.86019 -37.52559 -36.00384 -32.98165 -32.33265 -29.59871 -27.96003 -27.23809 -26.02206 -24.23688 -23.50458 -22.22558 -20.60611 -19.27244 -16.60279 -16.56333 -16.16988 -15.74993 -15.14789 -14.86064 -14.53625 -14.35142 -13.89963 -13.62440 -13.23976 -13.05678 -12.57935 -11.98621 -11.78152 -11.74126 -11.51510 -11.20399 -11.03464 -10.99603 -10.90530 -10.80075 -10.66666 -10.51003 -10.19388 -9.87447 -9.46612 -9.23094 -9.08592 -8.43734 -7.18408 -6.04271 -4.04969 3.32695 3.36443 3.39887 3.99634 4.12763 4.41614 4.71761 4.79761 4.88748 5.09111 5.14775 5.31376 5.35314 5.55335 5.58408 5.67457 5.70743 5.75633 5.80757 5.88529 5.91696 5.98677 6.02967 6.10715 6.17147 6.22859 6.36339 6.39258 6.74889 6.84078 7.24085 7.30322 7.61703 7.81002 8.07677 8.20752 8.55549 9.02849 9.59310 11.06657 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.029205 B = 0.006103 C = 0.005854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.524413 B = 4587.042448 C = 4782.183746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.366 6.366 3 C 0.106 3.894 4 H 0.071 0.929 5 C 0.056 3.944 6 N -0.535 5.535 7 C 0.042 3.958 8 C 0.192 3.808 9 C -0.505 4.505 10 H 0.063 0.937 11 C 0.055 3.945 12 N -0.901 5.901 13 Si 0.898 3.102 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.276 1.276 17 C -0.145 4.145 18 H 0.081 0.919 19 C -0.153 4.153 20 C 0.046 3.954 21 O -0.383 6.383 22 C 0.054 3.946 23 H 0.045 0.955 24 H 0.029 0.971 25 H 0.079 0.921 26 H 0.040 0.960 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.044 0.956 30 H 0.011 0.989 31 H 0.027 0.973 32 H -0.011 1.011 33 H 0.261 0.739 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.896 -2.730 -12.295 12.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.284 6.284 3 C 0.047 3.953 4 H 0.089 0.911 5 C -0.073 4.073 6 N -0.259 5.259 7 C -0.106 4.106 8 C 0.067 3.933 9 C -0.544 4.544 10 H 0.081 0.919 11 C -0.146 4.146 12 N -0.540 5.540 13 Si 0.726 3.274 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.202 1.202 17 C -0.164 4.164 18 H 0.100 0.900 19 C -0.191 4.191 20 C -0.030 4.030 21 O -0.302 6.302 22 C -0.023 4.023 23 H 0.064 0.936 24 H 0.048 0.952 25 H 0.098 0.902 26 H 0.058 0.942 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.063 0.937 30 H 0.030 0.970 31 H 0.045 0.955 32 H 0.007 0.993 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.660 -3.127 -12.387 12.792 hybrid contribution -0.047 0.817 1.156 1.417 sum 0.613 -2.310 -11.230 11.482 Atomic orbital electron populations 1.22705 0.82054 1.02231 0.99378 1.87919 1.18759 1.27036 1.94674 1.22107 0.95935 0.85215 0.92056 0.91088 1.22206 0.94432 0.99087 0.91542 1.62015 1.28030 1.35762 1.00083 1.22171 0.89958 0.97644 1.00838 1.19783 0.94656 0.86277 0.92572 1.21135 1.43312 0.94939 0.95000 0.91891 1.24984 0.95828 0.94837 0.98974 1.69944 1.47164 1.01954 1.34986 0.86565 0.78866 0.77999 0.84017 1.20262 1.21387 1.20175 1.23074 1.00329 0.95121 0.97913 0.90041 1.23023 0.97254 0.96865 1.01925 1.23379 0.96822 0.89204 0.93633 1.89096 1.77090 1.28760 1.35253 1.23535 0.93836 0.92292 0.92603 0.93601 0.95209 0.90232 0.94168 0.91370 0.90999 0.93743 0.97044 0.95494 0.99304 0.92917 0.90713 0.89550 0.89374 0.92251 0.91237 0.89307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.84 101.05 1.10 1.57 16 2 O -0.37 -6.32 10.09 -35.23 -0.36 -6.68 16 3 C 0.11 1.77 1.96 -26.73 -0.05 1.71 16 4 H 0.07 1.34 6.29 -51.93 -0.33 1.01 16 5 C 0.06 1.01 4.05 -3.83 -0.02 0.99 16 6 N -0.53 -11.67 4.64 -244.37 -1.13 -12.81 16 7 C 0.04 0.84 9.31 60.06 0.56 1.40 16 8 C 0.19 4.95 4.55 -4.98 -0.02 4.93 16 9 C -0.51 -14.18 8.58 -34.44 -0.30 -14.47 16 10 H 0.06 1.76 7.10 -52.49 -0.37 1.39 16 11 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 12 N -0.90 -26.49 13.29 55.43 0.74 -25.75 16 13 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 C -0.14 -2.00 3.11 -89.05 -0.28 -2.28 16 18 H 0.08 1.06 7.68 -51.93 -0.40 0.66 16 19 C -0.15 -1.97 6.12 -25.16 -0.15 -2.12 16 20 C 0.05 0.57 7.64 37.94 0.29 0.86 16 21 O -0.38 -5.46 11.65 -35.23 -0.41 -5.87 16 22 C 0.05 0.73 6.81 37.93 0.26 0.98 16 23 H 0.05 0.71 7.97 -51.93 -0.41 0.30 16 24 H 0.03 0.36 7.68 -51.93 -0.40 -0.04 16 25 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.04 0.71 6.13 -51.93 -0.32 0.39 16 27 H 0.07 1.14 5.81 -51.93 -0.30 0.84 16 28 H 0.07 1.50 7.01 -51.93 -0.36 1.14 16 29 H 0.04 0.76 7.85 -51.92 -0.41 0.35 16 30 H 0.01 0.22 8.08 -51.93 -0.42 -0.20 16 31 H 0.03 0.73 6.57 -51.93 -0.34 0.39 16 32 H -0.01 -0.30 8.07 -51.93 -0.42 -0.72 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 1.21 6.36 -51.93 -0.33 0.88 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.97 5.66 -51.92 -0.29 0.68 16 39 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 306.23 15.07 4.61 4.61 Total: -1.00 -30.49 306.23 -6.64 -37.13 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -6.35 Total: -2.26 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 1.29 Total: -4.97 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: -0.40 Total: -38.56 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: -0.77 Total: -12.54 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.49 -6.64 -37.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595347316.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.259 kcal (2) G-P(sol) polarization free energy of solvation -30.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds