Wall clock time and date at job start Mon Mar 30 2020 21:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99833 * 2 1 4 4 H 1.08993 * 109.46826 * 30.00071 * 3 2 1 5 5 C 1.52999 * 109.46860 * 270.00000 * 3 2 1 6 6 N 1.46896 * 109.47249 * 65.00189 * 5 3 2 7 7 C 1.46894 * 111.00119 * 66.04567 * 6 5 3 8 8 C 1.46900 * 110.99779 * 189.99650 * 6 5 3 9 9 C 1.50699 * 109.46724 * 169.99912 * 8 6 5 10 10 H 1.07999 * 120.00803 * 0.02562 * 9 8 6 11 11 C 1.37881 * 119.99889 * 180.02562 * 9 8 6 12 12 N 1.31520 * 120.00186 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00030 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.47297 * 89.99863 * 13 11 9 15 15 H 1.48503 * 109.47261 * 330.00044 * 13 11 9 16 16 H 1.48500 * 109.47454 * 210.00037 * 13 11 9 17 17 C 1.53002 * 109.46765 * 149.99825 * 3 2 1 18 18 H 1.09003 * 110.45457 * 177.39367 * 17 3 2 19 19 C 1.54506 * 110.51482 * 299.99769 * 17 3 2 20 20 C 1.54486 * 104.06220 * 118.64198 * 19 17 3 21 21 O 1.44423 * 104.80094 * 23.98242 * 20 19 17 22 22 C 1.44427 * 105.27672 * 319.48595 * 21 20 19 23 23 H 1.09000 * 109.47582 * 59.99938 * 1 2 3 24 24 H 1.09002 * 109.47389 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47615 * 300.00062 * 1 2 3 26 26 H 1.09004 * 109.47223 * 304.99905 * 5 3 2 27 27 H 1.09000 * 109.46627 * 185.00772 * 5 3 2 28 28 H 1.08994 * 109.47361 * 183.95516 * 7 6 5 29 29 H 1.09004 * 109.47370 * 303.95695 * 7 6 5 30 30 H 1.09001 * 109.47658 * 63.95067 * 7 6 5 31 31 H 1.09004 * 109.47135 * 50.00277 * 8 6 5 32 32 H 1.08997 * 109.47656 * 289.99891 * 8 6 5 33 33 H 0.96998 * 120.00124 * 180.02562 * 12 11 9 34 34 H 1.08995 * 110.51518 * 237.29459 * 19 17 3 35 35 H 1.09004 * 110.50972 * 359.86654 * 19 17 3 36 36 H 1.09007 * 110.36602 * 142.80935 * 20 19 17 37 37 H 1.08999 * 110.37414 * 265.03735 * 20 19 17 38 38 H 1.08996 * 110.36902 * 281.68112 * 22 21 20 39 39 H 1.08996 * 110.37220 * 159.34272 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 0.5138 5 6 2.2176 1.7714 -1.4425 6 7 0.9128 1.9269 -2.0993 7 6 0.1420 3.0173 -1.4873 8 6 1.0728 2.1415 -3.5437 9 6 -0.2724 2.0513 -4.2168 10 1 -1.1578 1.8548 -3.6304 11 6 -0.3731 2.2198 -5.5816 12 7 -1.5471 2.1417 -6.1691 13 14 1.1582 2.5591 -6.5962 14 1 1.7474 1.2732 -7.0485 15 1 2.1484 3.2930 -5.7678 16 1 0.7964 3.3809 -7.7790 17 6 3.3588 1.2633 0.7213 18 1 3.8380 2.2418 0.6907 19 6 3.1770 0.7951 2.1825 20 6 4.0044 -0.5069 2.2652 21 8 4.9848 -0.3886 1.2113 22 6 4.2747 0.1889 0.0941 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 2.8099 1.0319 -1.9816 27 1 2.7413 2.7273 -1.4438 28 1 -0.8460 3.0653 -1.9449 29 1 0.0386 2.8335 -0.4178 30 1 0.6616 3.9625 -1.6447 31 1 1.7357 1.3791 -3.9530 32 1 1.5015 3.1281 -3.7192 33 1 -1.6179 2.2599 -7.1293 34 1 3.5684 1.5410 2.8741 35 1 2.1259 0.5960 2.3917 36 1 4.4968 -0.5825 3.2348 37 1 3.3657 -1.3738 2.0961 38 1 3.6779 -0.5712 -0.4099 39 1 4.9746 0.6477 -0.6042 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595347317.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:08:22 Heat of formation + Delta-G solvation = -83.483167 kcal Electronic energy + Delta-G solvation = -18706.866431 eV Core-core repulsion = 15842.994930 eV Total energy + Delta-G solvation = -2863.871500 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.83974 -37.86678 -35.90776 -32.99022 -32.36865 -30.07607 -28.31121 -27.27273 -25.98019 -24.97522 -23.15292 -21.74443 -20.15149 -20.02592 -16.92389 -16.69704 -16.30048 -16.04848 -14.99258 -14.87015 -14.65331 -14.31222 -13.99995 -13.81033 -13.35587 -12.91448 -12.51933 -12.37702 -12.27674 -11.86081 -11.52197 -11.35581 -11.29232 -11.06020 -10.97013 -10.67227 -10.57906 -10.43819 -10.21881 -9.97198 -9.69784 -9.40578 -9.06716 -8.59318 -7.39287 -6.08023 -4.05495 3.26863 3.34269 3.35829 3.88236 4.15636 4.39634 4.43972 4.61905 4.82214 5.03493 5.13105 5.24811 5.28994 5.37861 5.48343 5.59081 5.69251 5.71595 5.74251 5.81157 5.88066 5.92819 5.93741 6.05212 6.12972 6.18345 6.24753 6.46755 6.60381 6.79734 6.81419 6.94840 7.50730 7.57584 7.81914 7.98397 8.61374 8.99238 9.53738 11.04990 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.035442 B = 0.005680 C = 0.005278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.828305 B = 4928.739917 C = 5304.220037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.376 6.376 3 C 0.103 3.897 4 H 0.062 0.938 5 C 0.028 3.972 6 N -0.526 5.526 7 C 0.031 3.969 8 C 0.162 3.838 9 C -0.509 4.509 10 H 0.080 0.920 11 C 0.069 3.931 12 N -0.900 5.900 13 Si 0.875 3.125 14 H -0.275 1.275 15 H -0.269 1.269 16 H -0.286 1.286 17 C -0.120 4.120 18 H 0.090 0.910 19 C -0.144 4.144 20 C 0.050 3.950 21 O -0.382 6.382 22 C 0.053 3.947 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.024 0.976 26 H 0.077 0.923 27 H 0.030 0.970 28 H 0.080 0.920 29 H 0.045 0.955 30 H 0.013 0.987 31 H 0.024 0.976 32 H -0.012 1.012 33 H 0.264 0.736 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.588 -1.385 15.597 17.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.295 6.295 3 C 0.045 3.955 4 H 0.080 0.920 5 C -0.101 4.101 6 N -0.250 5.250 7 C -0.118 4.118 8 C 0.036 3.964 9 C -0.547 4.547 10 H 0.098 0.902 11 C -0.133 4.133 12 N -0.539 5.539 13 Si 0.702 3.298 14 H -0.201 1.201 15 H -0.194 1.194 16 H -0.212 1.212 17 C -0.139 4.139 18 H 0.108 0.892 19 C -0.182 4.182 20 C -0.027 4.027 21 O -0.301 6.301 22 C -0.024 4.024 23 H 0.100 0.900 24 H 0.092 0.908 25 H 0.042 0.958 26 H 0.095 0.905 27 H 0.048 0.952 28 H 0.099 0.901 29 H 0.064 0.936 30 H 0.032 0.968 31 H 0.042 0.958 32 H 0.006 0.994 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.564 -2.037 15.474 17.802 hybrid contribution 0.721 1.308 -0.849 1.718 sum 9.285 -0.728 14.625 17.338 Atomic orbital electron populations 1.22955 0.80544 1.02129 1.01328 1.87765 1.20319 1.26382 1.95025 1.22018 0.93016 0.85776 0.94731 0.91992 1.22720 0.92903 0.99447 0.95012 1.61959 1.14426 1.43250 1.05361 1.22349 1.00265 0.91547 0.97622 1.20197 0.98406 0.94346 0.83469 1.21005 0.92894 1.48388 0.92421 0.90177 1.24892 0.95735 0.94945 0.97713 1.69890 1.23140 1.50488 1.10400 0.86872 0.83995 0.78790 0.80149 1.20089 1.19369 1.21207 1.22691 0.95721 1.00524 0.94966 0.89162 1.22890 1.01545 0.97768 0.96013 1.23329 0.90670 0.97213 0.91505 1.89068 1.33444 1.83814 1.23779 1.23463 0.94360 0.95082 0.89459 0.89991 0.90809 0.95778 0.90494 0.95176 0.90084 0.93596 0.96803 0.95770 0.99416 0.92649 0.91167 0.90229 0.89765 0.92004 0.90495 0.89488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.51 101.05 1.06 1.45 16 2 O -0.38 -5.79 8.76 -35.23 -0.31 -6.10 16 3 C 0.10 1.45 1.77 -26.73 -0.05 1.40 16 4 H 0.06 0.84 5.91 -51.93 -0.31 0.54 16 5 C 0.03 0.47 4.38 -3.83 -0.02 0.45 16 6 N -0.53 -10.54 2.99 -244.38 -0.73 -11.27 16 7 C 0.03 0.55 8.48 60.06 0.51 1.06 16 8 C 0.16 3.87 3.79 -4.98 -0.02 3.85 16 9 C -0.51 -14.20 9.07 -34.44 -0.31 -14.51 16 10 H 0.08 2.41 7.35 -52.49 -0.39 2.03 16 11 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 12 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 13 Si 0.87 21.42 27.47 -169.99 -4.67 16.75 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 C -0.12 -1.44 3.02 -89.05 -0.27 -1.71 16 18 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 19 C -0.14 -1.52 6.51 -25.16 -0.16 -1.69 16 20 C 0.05 0.55 7.63 37.94 0.29 0.84 16 21 O -0.38 -5.24 11.65 -35.23 -0.41 -5.65 16 22 C 0.05 0.69 6.26 37.93 0.24 0.92 16 23 H 0.08 1.43 5.70 -51.93 -0.30 1.13 16 24 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.02 0.30 8.08 -51.93 -0.42 -0.12 16 26 H 0.08 1.31 7.40 -51.93 -0.38 0.93 16 27 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 28 H 0.08 1.64 6.86 -51.93 -0.36 1.28 16 29 H 0.05 0.70 6.05 -51.93 -0.31 0.38 16 30 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.02 0.59 7.36 -51.93 -0.38 0.21 16 32 H -0.01 -0.29 7.18 -51.93 -0.37 -0.66 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.84 7.52 -51.93 -0.39 0.45 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 1.11 7.06 -51.93 -0.37 0.74 16 39 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 302.34 15.07 4.56 4.56 Total: -1.00 -30.44 302.34 -6.14 -36.58 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -6.52 Total: -2.26 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: 1.17 Total: -6.05 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.04 Total: -37.82 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -0.72 Total: -11.75 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.44 -6.14 -36.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595347317.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.904 kcal (2) G-P(sol) polarization free energy of solvation -30.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds