Wall clock time and date at job start Mon Mar 30 2020 21:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 H 1.09004 * 110.86248 * 305.69452 * 10 9 7 12 12 C 1.54909 * 110.98169 * 181.88877 * 10 9 7 13 13 O 1.44239 * 103.05638 * 206.36109 * 12 10 9 14 14 C 1.43362 * 107.30807 * 21.37505 * 13 12 10 15 15 H 1.08997 * 109.63638 * 240.82714 * 14 13 12 16 16 C 1.53002 * 109.50758 * 120.51172 * 14 13 12 17 17 H 1.08999 * 110.30283 * 303.53740 * 16 14 13 18 18 C 1.53705 * 110.34020 * 65.71245 * 16 14 13 19 19 C 1.52938 * 112.49046 * 116.04980 * 18 16 14 20 20 C 1.55153 * 108.96161 * 30.09654 * 19 18 16 21 21 S 1.83396 * 110.34254 * 181.25875 * 16 14 13 22 22 O 1.43755 * 108.79062 * 0.70998 * 14 13 12 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 25 25 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 26 26 H 1.09004 * 110.69359 * 324.72377 * 12 10 9 27 27 H 1.08995 * 110.69915 * 87.92925 * 12 10 9 28 28 H 1.09004 * 108.88340 * 236.84126 * 18 16 14 29 29 H 1.08990 * 108.88785 * 355.25082 * 18 16 14 30 30 H 1.08999 * 109.60725 * 150.02987 * 19 18 16 31 31 H 1.09003 * 109.60464 * 270.17161 * 19 18 16 32 32 H 1.08999 * 111.13189 * 76.47680 * 20 19 18 33 33 H 1.09006 * 111.13442 * 200.65320 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 1 3.5903 -3.2016 0.8251 12 6 5.5693 -2.6777 0.0469 13 8 5.8816 -3.9373 -0.5828 14 6 4.7505 -4.3063 -1.3826 15 1 4.3461 -5.2549 -1.0296 16 6 5.1813 -4.4433 -2.8444 17 1 5.6397 -3.5175 -3.1920 18 6 6.1600 -5.6175 -3.0051 19 6 5.5970 -6.7318 -3.8884 20 6 4.6336 -6.1089 -4.9330 21 16 3.7425 -4.8788 -3.8949 22 8 3.7486 -3.2817 -1.2685 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6797 -0.8895 25 1 3.8746 -0.6808 0.8905 26 1 5.9945 -1.8487 -0.5190 27 1 5.9232 -2.6635 1.0777 28 1 7.0843 -5.2481 -3.4493 29 1 6.3843 -6.0272 -2.0203 30 1 6.4136 -7.2399 -4.4013 31 1 5.0540 -7.4482 -3.2718 32 1 5.1866 -5.6194 -5.7347 33 1 3.9482 -6.8573 -5.3310 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260075708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:05:02 Heat of formation + Delta-G solvation = -119.091455 kcal Electronic energy + Delta-G solvation = -15959.363194 eV Core-core repulsion = 13303.148717 eV Total energy + Delta-G solvation = -2656.214477 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 244.092 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.43525 -37.16936 -36.14303 -35.19758 -33.31514 -31.28060 -28.73780 -26.62533 -24.95627 -23.90416 -22.45639 -21.03900 -19.19697 -18.58078 -17.85198 -17.50081 -16.61296 -16.28123 -15.96491 -15.59315 -15.03281 -14.77527 -14.73316 -14.05243 -13.90228 -13.63981 -13.53532 -13.25878 -12.93649 -12.64033 -12.42903 -12.37513 -11.93617 -11.70136 -11.59450 -11.48532 -11.03106 -10.79668 -10.78535 -10.69770 -8.81117 -8.29768 -6.34937 0.72523 1.34520 1.38720 1.42944 1.49520 2.35227 2.54664 2.84478 3.06346 3.54968 3.60030 3.72616 3.88713 3.95611 4.03137 4.15120 4.23313 4.33668 4.45830 4.58249 4.65846 4.71724 4.76769 4.91875 4.98749 5.04148 5.05579 5.18936 5.32666 5.57840 6.08834 6.24275 6.71011 7.27507 8.87898 Molecular weight = 244.09amu Principal moments of inertia in cm(-1) A = 0.033416 B = 0.006210 C = 0.005600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.731150 B = 4507.621083 C = 4999.079685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.956 3.044 4 H -0.256 1.256 5 H -0.245 1.245 6 H -0.286 1.286 7 C -0.527 4.527 8 H 0.022 0.978 9 C -0.003 4.003 10 C 0.059 3.941 11 H 0.072 0.928 12 C 0.031 3.969 13 O -0.384 6.384 14 C 0.243 3.757 15 H 0.088 0.912 16 C -0.041 4.041 17 H 0.093 0.907 18 C -0.115 4.115 19 C -0.118 4.118 20 C -0.061 4.061 21 S -0.344 6.344 22 O -0.385 6.385 23 H 0.267 0.733 24 H 0.025 0.975 25 H 0.056 0.944 26 H 0.082 0.918 27 H 0.131 0.869 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.114 0.886 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.552 -11.321 -6.042 21.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.778 3.222 4 H -0.180 1.180 5 H -0.169 1.169 6 H -0.212 1.212 7 C -0.565 4.565 8 H 0.041 0.959 9 C -0.040 4.040 10 C 0.002 3.998 11 H 0.090 0.910 12 C -0.045 4.045 13 O -0.305 6.305 14 C 0.146 3.854 15 H 0.105 0.895 16 C -0.170 4.170 17 H 0.111 0.889 18 C -0.154 4.154 19 C -0.157 4.157 20 C -0.209 4.209 21 S -0.118 6.118 22 O -0.306 6.306 23 H 0.075 0.925 24 H 0.043 0.957 25 H 0.074 0.926 26 H 0.100 0.900 27 H 0.149 0.851 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.133 0.867 31 H 0.096 0.904 32 H 0.122 0.878 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 16.274 -10.900 -6.198 20.544 hybrid contribution 0.334 0.549 0.128 0.656 sum 16.608 -10.351 -6.070 20.489 Atomic orbital electron populations 1.70090 1.08548 1.28228 1.52514 1.26093 0.95712 1.03778 0.93963 0.85587 0.79360 0.77588 0.79663 1.18023 1.16875 1.21228 1.21255 0.91683 0.92968 1.50604 0.95944 1.19543 0.94760 0.91574 0.98131 1.23982 0.94409 0.95840 0.85565 0.91025 1.24428 0.93339 0.86069 1.00705 1.88777 1.39213 1.38927 1.63614 1.24052 0.78734 0.92427 0.90209 0.89518 1.24118 0.94945 1.03402 0.94576 0.88898 1.21984 0.97915 0.92886 1.02602 1.22407 0.99589 0.97734 0.95957 1.24561 0.99786 0.97484 0.99040 1.88814 1.22414 1.57264 1.43315 1.89449 1.51747 1.49688 1.39669 0.92466 0.95650 0.92583 0.89955 0.85116 0.88900 0.89410 0.86746 0.90427 0.87809 0.86153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.96 13.96 21.45 0.30 -61.67 16 2 C 0.00 0.05 5.47 84.66 0.46 0.52 16 3 Si 0.96 44.48 27.47 68.60 1.88 46.36 16 4 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 5 H -0.25 -10.51 6.54 99.48 0.65 -9.86 16 6 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 7 C -0.53 -31.73 9.57 25.60 0.25 -31.49 16 8 H 0.02 1.53 7.99 -2.91 -0.02 1.50 16 9 C 0.00 -0.13 3.83 29.85 0.11 -0.02 16 10 C 0.06 2.40 3.43 31.25 0.11 2.51 16 11 H 0.07 2.96 8.14 -2.38 -0.02 2.94 16 12 C 0.03 0.92 7.55 72.63 0.55 1.47 16 13 O -0.38 -11.73 10.86 -126.22 -1.37 -13.11 16 14 C 0.24 8.22 3.30 71.98 0.24 8.46 16 15 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 16 C -0.04 -1.20 3.34 30.83 0.10 -1.10 16 17 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 18 C -0.12 -2.22 5.90 30.81 0.18 -2.04 16 19 C -0.12 -1.77 6.34 31.31 0.20 -1.57 16 20 C -0.06 -1.13 7.52 72.72 0.55 -0.58 16 21 S -0.34 -11.10 22.35 -56.49 -1.26 -12.36 16 22 O -0.38 -17.11 10.62 -126.22 -1.34 -18.45 16 23 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 24 H 0.03 1.21 7.20 -2.38 -0.02 1.19 16 25 H 0.06 2.36 7.57 -2.39 -0.02 2.34 16 26 H 0.08 2.35 8.04 -2.39 -0.02 2.33 16 27 H 0.13 3.05 8.14 -2.39 -0.02 3.03 16 28 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.09 1.68 7.45 -2.39 -0.02 1.66 16 30 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 32 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.12 1.86 8.14 -2.38 -0.02 1.84 16 Total: -1.00 -74.78 282.09 1.98 -72.80 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 1.02 Total: 10.25 kcal Atomic # 6 Polarization: -26.58 SS G_CDS: 2.75 Total: -23.84 kcal Atomic # 7 Polarization: -61.96 SS G_CDS: 0.30 Total: -61.67 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -2.71 Total: -31.55 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.88 Total: 46.36 kcal Atomic # 16 Polarization: -11.10 SS G_CDS: -1.26 Total: -12.36 kcal Total: -74.78 1.98 -72.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260075708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.295 kcal (2) G-P(sol) polarization free energy of solvation -74.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds