Wall clock time and date at job start Mon Mar 30 2020 21:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38378 * 119.67757 * 2 1 4 4 C 1.38224 * 120.04856 * 180.28005 * 3 2 1 5 5 C 1.39214 * 119.71040 * 359.40823 * 4 3 2 6 6 C 1.40375 * 120.35859 * 0.27027 * 5 4 3 7 7 C 1.38375 * 119.67583 * 179.66086 * 2 1 3 8 8 C 1.50699 * 119.91014 * 359.97438 * 7 2 1 9 9 N 1.39669 * 109.46347 * 179.97438 * 6 5 4 10 10 C 1.36344 * 124.30668 * 180.02562 * 9 6 5 11 11 H 1.08001 * 119.99842 * 318.85360 * 10 9 6 12 12 C 1.39561 * 119.99978 * 138.85567 * 10 9 6 13 13 N 1.31010 * 119.99651 * 159.79083 * 12 10 9 14 14 Si 1.86802 * 119.99860 * 339.79272 * 12 10 9 15 15 H 1.48501 * 109.46908 * 95.26664 * 14 12 10 16 16 H 1.48501 * 109.46958 * 215.26362 * 14 12 10 17 17 H 1.48494 * 109.47095 * 335.26517 * 14 12 10 18 18 C 1.34416 * 111.38833 * 359.97438 * 9 6 5 19 19 O 1.21491 * 126.15973 * 179.97438 * 18 9 6 20 20 C 1.47803 * 133.10004 * 180.25013 * 5 4 3 21 21 O 1.21434 * 127.53620 * 0.02562 * 20 5 4 22 22 H 1.09003 * 109.47178 * 270.33794 * 1 2 3 23 23 H 1.08999 * 109.47244 * 30.34046 * 1 2 3 24 24 H 1.09002 * 109.47232 * 150.33883 * 1 2 3 25 25 H 1.08003 * 119.97591 * 359.96440 * 3 2 1 26 26 H 1.08004 * 120.14426 * 179.67690 * 4 3 2 27 27 H 1.08996 * 109.46797 * 264.67740 * 8 7 2 28 28 H 1.08995 * 109.47527 * 24.68386 * 8 7 2 29 29 H 1.09004 * 109.47280 * 144.68214 * 8 7 2 30 30 H 0.97003 * 119.99680 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1922 1.2023 0.0000 4 6 3.5744 1.2112 -0.0058 5 6 4.2722 0.0066 0.0008 6 6 3.5797 -1.2144 0.0076 7 6 2.1921 -1.2022 0.0071 8 6 1.4292 -2.5018 0.0154 9 7 4.4956 -2.2688 0.0128 10 6 4.1493 -3.5876 0.0194 11 1 3.3310 -3.9278 0.6367 12 6 4.8522 -4.4976 -0.7713 13 7 4.8097 -5.7771 -0.4926 14 14 5.8538 -3.8915 -2.2270 15 1 7.2682 -3.7089 -1.8130 16 1 5.7843 -4.8886 -3.3252 17 1 5.3051 -2.5952 -2.6999 18 6 5.7620 -1.8182 0.0092 19 8 6.7662 -2.5019 0.0126 20 6 5.7122 -0.3263 0.0021 21 8 6.6500 0.4453 -0.0023 22 1 -0.3634 0.0061 1.0277 23 1 -0.3634 0.8869 -0.5191 24 1 -0.3634 -0.8930 -0.5086 25 1 1.6465 2.1343 -0.0006 26 1 4.1107 2.1487 -0.0111 27 1 1.3279 -2.8571 1.0408 28 1 0.4399 -2.3452 -0.4143 29 1 1.9682 -3.2433 -0.5744 30 1 5.2986 -6.4096 -1.0420 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042076621.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:05:29 Heat of formation + Delta-G solvation = -15.015293 kcal Electronic energy + Delta-G solvation = -17637.630756 eV Core-core repulsion = 14785.059497 eV Total energy + Delta-G solvation = -2852.571259 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.084 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.24871 -38.42898 -37.70782 -35.59895 -33.49666 -32.52191 -30.44829 -28.88486 -26.37268 -25.32987 -23.80919 -21.62429 -20.21584 -19.76076 -17.79255 -16.83382 -16.03869 -15.57128 -15.46423 -14.76917 -14.50459 -13.90769 -13.82184 -13.52423 -13.23875 -12.97165 -12.70623 -12.47643 -12.21033 -11.91076 -11.70457 -11.43705 -11.32011 -11.03090 -10.59148 -10.48300 -10.28442 -9.64800 -8.96901 -8.59904 -8.37933 -7.49048 -6.68581 -4.44051 0.58132 1.63081 2.26644 3.13014 3.21849 3.35443 3.66763 3.80611 4.03595 4.14350 4.30987 4.76893 4.98924 5.04038 5.15447 5.31672 5.42054 5.64561 5.72582 5.77064 6.00903 6.06403 6.18957 6.27757 6.47633 6.59396 6.73220 6.92501 7.03712 7.27400 7.31714 7.64747 8.05544 8.27060 8.83776 9.15217 10.35289 Molecular weight = 245.08amu Principal moments of inertia in cm(-1) A = 0.022815 B = 0.011397 C = 0.008323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.979643 B = 2456.186453 C = 3363.472130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.023 4.023 3 C -0.182 4.182 4 C -0.012 4.012 5 C -0.268 4.268 6 C 0.211 3.789 7 C -0.115 4.115 8 C -0.119 4.119 9 N -0.376 5.376 10 C -0.368 4.368 11 H 0.122 0.878 12 C 0.096 3.904 13 N -0.831 5.831 14 Si 0.876 3.124 15 H -0.245 1.245 16 H -0.285 1.285 17 H -0.271 1.271 18 C 0.420 3.580 19 O -0.465 6.465 20 C 0.392 3.608 21 O -0.405 6.405 22 H 0.073 0.927 23 H 0.066 0.934 24 H 0.075 0.925 25 H 0.125 0.875 26 H 0.126 0.874 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.096 0.904 30 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.438 9.678 -0.403 13.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.024 4.024 3 C -0.201 4.201 4 C -0.031 4.031 5 C -0.273 4.273 6 C 0.111 3.889 7 C -0.118 4.118 8 C -0.175 4.175 9 N -0.085 5.085 10 C -0.493 4.493 11 H 0.139 0.861 12 C -0.118 4.118 13 N -0.462 5.462 14 Si 0.702 3.298 15 H -0.170 1.170 16 H -0.212 1.212 17 H -0.196 1.196 18 C 0.208 3.792 19 O -0.342 6.342 20 C 0.265 3.735 21 O -0.276 6.276 22 H 0.092 0.908 23 H 0.085 0.915 24 H 0.094 0.906 25 H 0.143 0.857 26 H 0.144 0.856 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.115 0.885 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.247 9.313 -0.426 12.447 hybrid contribution 0.462 0.102 -0.707 0.851 sum -7.785 9.415 -1.133 12.269 Atomic orbital electron populations 1.20927 0.91039 1.03030 1.02533 1.19740 0.95809 0.91852 0.95018 1.20717 0.93326 0.97320 1.08727 1.20573 0.93565 0.95772 0.93196 1.20519 0.94841 0.94342 1.17613 1.18878 0.91331 0.87016 0.91704 1.18981 0.90073 0.95994 1.06743 1.21024 0.98880 0.94790 1.02830 1.41286 1.03283 1.05710 1.58250 1.19104 1.22568 0.78234 1.29405 0.86098 1.25304 0.94958 0.94601 0.96923 1.69518 1.37946 1.02299 1.36471 0.86819 0.83161 0.79025 0.80793 1.16965 1.21167 1.19584 1.20762 0.84680 0.89908 0.83818 1.90702 1.33642 1.63494 1.46393 1.22712 0.88306 0.90773 0.71754 1.90490 1.44899 1.58179 1.34052 0.90810 0.91537 0.90613 0.85659 0.85563 0.91692 0.92237 0.88544 0.90606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 9.57 36.01 0.34 -0.87 16 2 C -0.02 -0.33 5.89 -104.52 -0.62 -0.94 16 3 C -0.18 -2.43 9.69 -39.54 -0.38 -2.82 16 4 C -0.01 -0.19 10.10 -39.22 -0.40 -0.59 16 5 C -0.27 -5.26 6.34 -104.82 -0.66 -5.93 16 6 C 0.21 4.39 6.65 -83.29 -0.55 3.83 16 7 C -0.11 -2.00 5.90 -104.38 -0.62 -2.62 16 8 C -0.12 -1.93 8.34 36.00 0.30 -1.63 16 9 N -0.38 -9.22 2.39 -59.26 -0.14 -9.36 16 10 C -0.37 -9.60 8.03 -15.05 -0.12 -9.73 16 11 H 0.12 3.13 6.60 -52.49 -0.35 2.79 16 12 C 0.10 2.62 5.15 -17.41 -0.09 2.53 16 13 N -0.83 -23.00 13.94 55.53 0.77 -22.23 16 14 Si 0.88 22.32 24.95 -169.99 -4.24 18.08 16 15 H -0.24 -6.60 6.36 56.52 0.36 -6.24 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 18 C 0.42 10.70 6.36 -11.83 -0.08 10.63 16 19 O -0.47 -13.13 13.89 5.36 0.07 -13.05 16 20 C 0.39 8.81 7.95 -31.08 -0.25 8.56 16 21 O -0.40 -9.27 18.04 5.41 0.10 -9.17 16 22 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 24 H 0.08 0.75 5.85 -51.93 -0.30 0.44 16 25 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 26 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 27 H 0.06 1.03 8.11 -51.93 -0.42 0.61 16 28 H 0.06 0.77 5.71 -51.93 -0.30 0.47 16 29 H 0.10 1.84 5.86 -51.93 -0.30 1.54 16 30 H 0.28 7.32 8.30 -40.82 -0.34 6.98 16 LS Contribution 256.53 15.07 3.87 3.87 Total: -1.00 -30.08 256.53 -5.22 -35.31 By element: Atomic # 1 Polarization: -1.34 SS G_CDS: -2.54 Total: -3.88 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -3.12 Total: 0.44 kcal Atomic # 7 Polarization: -32.22 SS G_CDS: 0.63 Total: -31.59 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: 0.17 Total: -22.22 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.24 Total: 18.08 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.08 -5.22 -35.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042076621.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.291 kcal (2) G-P(sol) polarization free energy of solvation -30.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds