Wall clock time and date at job start Mon Mar 30 2020 21:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42100 * 110.54113 * 2 1 4 4 O 1.42100 * 110.54215 * 136.74760 * 2 1 3 5 5 C 1.76203 * 104.44838 * 248.37328 * 2 1 3 6 6 C 1.39775 * 126.08764 * 114.69468 * 5 2 1 7 7 N 1.30846 * 108.31630 * 179.81433 * 6 5 2 8 8 N 1.40056 * 108.38908 * 0.44161 * 7 6 5 9 9 C 1.46508 * 126.04316 * 179.72185 * 8 7 6 10 10 C 1.50704 * 109.46422 * 269.99874 * 9 8 7 11 11 H 1.07993 * 120.00962 * 359.97438 * 10 9 8 12 12 C 1.37888 * 119.99544 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99762 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99856 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47149 * 89.99903 * 14 12 10 16 16 H 1.48501 * 109.47062 * 209.99959 * 14 12 10 17 17 H 1.48500 * 109.47253 * 330.00113 * 14 12 10 18 18 C 1.35251 * 107.92124 * 359.71648 * 8 7 6 19 19 N 1.39202 * 126.22707 * 180.02562 * 18 8 7 20 20 H 1.09002 * 109.47124 * 51.62553 * 1 2 3 21 21 H 1.09001 * 109.46975 * 291.62674 * 1 2 3 22 22 H 1.09004 * 109.47147 * 171.62637 * 1 2 3 23 23 H 1.07995 * 125.84416 * 359.97438 * 6 5 2 24 24 H 1.08996 * 109.47230 * 29.99224 * 9 8 7 25 25 H 1.08996 * 109.47458 * 149.99968 * 9 8 7 26 26 H 0.97006 * 119.99988 * 180.02562 * 13 12 10 27 27 H 0.96996 * 120.00473 * 180.02562 * 19 18 8 28 28 H 0.97006 * 119.99801 * 0.02562 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 0.9118 5 6 2.2537 -0.6289 -1.5862 6 6 2.9161 0.0747 -2.5961 7 7 3.0689 -0.7239 -3.6213 8 7 2.4995 -1.9636 -3.3044 9 6 2.4499 -3.1382 -4.1787 10 6 1.1860 -3.1010 -4.9985 11 1 0.4891 -2.2845 -4.8800 12 6 0.9192 -4.1096 -5.9001 13 7 1.7680 -5.1036 -6.0449 14 14 -0.6478 -4.0639 -6.9158 15 1 -0.3943 -3.3351 -8.1846 16 1 -1.0811 -5.4514 -7.2200 17 1 -1.7139 -3.3690 -6.1504 18 6 2.0035 -1.8850 -2.0486 19 7 1.3556 -2.9031 -1.3547 20 1 -0.3633 0.6380 -0.8057 21 1 -0.3633 0.3788 0.9553 22 1 -0.3634 -1.0167 -0.1497 23 1 3.2475 1.1009 -2.5390 24 1 3.3141 -3.1334 -4.8430 25 1 2.4630 -4.0436 -3.5720 26 1 1.5805 -5.8129 -6.6795 27 1 1.0341 -2.7471 -0.4530 28 1 1.2257 -3.7686 -1.7731 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087196330.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:06:38 Heat of formation + Delta-G solvation = -0.654822 kcal Electronic energy + Delta-G solvation = -15846.082714 eV Core-core repulsion = 13026.037780 eV Total energy + Delta-G solvation = -2820.044934 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 245.062 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.60464 -36.75639 -35.59105 -34.41533 -33.77902 -31.64808 -29.39885 -28.11445 -27.25882 -23.52697 -21.33719 -20.16151 -18.58140 -17.39761 -16.81124 -16.51718 -15.89946 -15.70527 -15.14156 -14.80284 -14.36686 -13.59921 -13.18016 -13.13394 -12.90822 -12.46031 -11.97848 -11.78574 -11.68866 -11.33136 -11.09417 -10.90404 -10.78107 -10.75018 -10.42317 -10.02950 -9.90274 -8.79092 -8.43518 -7.73582 -6.40803 -4.49670 0.46789 2.58795 2.98817 3.09304 3.11722 3.18970 3.22836 3.41459 4.07794 4.16798 4.20470 4.43498 4.85536 4.93222 5.02170 5.46131 5.67182 5.76626 5.88785 6.61455 6.83154 6.99326 7.20169 7.52203 7.64261 7.71128 7.93305 8.41337 8.57943 9.18116 10.66906 Molecular weight = 245.06amu Principal moments of inertia in cm(-1) A = 0.039042 B = 0.006414 C = 0.006237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.004215 B = 4364.509844 C = 4487.966222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.660 4.660 2 S 2.541 3.459 3 O -0.952 6.952 4 O -0.955 6.955 5 C -0.874 4.874 6 C 0.130 3.870 7 N -0.289 5.289 8 N -0.352 5.352 9 C 0.253 3.747 10 C -0.543 4.543 11 H 0.065 0.935 12 C 0.067 3.933 13 N -0.888 5.888 14 Si 0.909 3.091 15 H -0.276 1.276 16 H -0.283 1.283 17 H -0.272 1.272 18 C 0.463 3.537 19 N -0.847 5.847 20 H 0.131 0.869 21 H 0.123 0.877 22 H 0.123 0.877 23 H 0.188 0.812 24 H 0.058 0.942 25 H 0.049 0.951 26 H 0.270 0.730 27 H 0.409 0.591 28 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.197 5.554 10.340 12.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.809 4.809 2 S 2.720 3.280 3 O -0.950 6.950 4 O -0.952 6.952 5 C -0.980 4.980 6 C -0.063 4.063 7 N -0.107 5.107 8 N -0.136 5.136 9 C 0.136 3.864 10 C -0.582 4.582 11 H 0.083 0.917 12 C -0.137 4.137 13 N -0.526 5.526 14 Si 0.736 3.264 15 H -0.202 1.202 16 H -0.208 1.208 17 H -0.197 1.197 18 C 0.224 3.776 19 N -0.397 5.397 20 H 0.150 0.850 21 H 0.142 0.858 22 H 0.141 0.859 23 H 0.204 0.796 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.240 0.760 28 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -3.100 5.400 9.499 11.358 hybrid contribution -1.884 -0.687 -0.441 2.053 sum -4.984 4.713 9.058 11.362 Atomic orbital electron populations 1.30343 1.28010 1.11438 1.11075 1.03562 0.76622 0.74148 0.73649 1.93497 1.77396 1.37100 1.86969 1.93533 1.77097 1.62076 1.62461 1.29822 1.37861 1.03277 1.27076 1.23050 0.95309 0.99205 0.88697 1.77405 1.20455 0.90457 1.22373 1.49599 1.42494 1.12102 1.09403 1.19727 0.99925 0.77898 0.88885 1.21302 1.05037 1.08977 1.22869 0.91651 1.24948 0.97567 0.94748 0.96434 1.69915 1.35890 1.11042 1.35720 0.86318 0.82256 0.77454 0.80416 1.20186 1.20838 1.19723 1.17391 0.87643 0.87549 0.84978 1.41847 1.65371 1.14091 1.18392 0.85041 0.85834 0.85854 0.79551 0.92380 0.93351 0.92063 0.75957 0.75416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -6.09 10.80 101.05 1.09 -5.00 15 2 S 2.54 34.31 5.57 -107.50 -0.60 33.71 15 3 O -0.95 -15.18 17.61 -57.54 -1.01 -16.19 15 4 O -0.95 -15.09 17.40 -57.54 -1.00 -16.09 15 5 C -0.87 -15.01 5.82 -39.75 -0.23 -15.24 15 6 C 0.13 2.39 11.57 -17.40 -0.20 2.19 15 7 N -0.29 -6.34 12.56 30.61 0.38 -5.95 15 8 N -0.35 -7.77 3.60 -61.63 -0.22 -7.99 15 9 C 0.25 6.13 6.00 -5.19 -0.03 6.10 15 10 C -0.54 -14.10 9.39 -34.43 -0.32 -14.42 15 11 H 0.07 1.74 7.81 -52.49 -0.41 1.33 15 12 C 0.07 1.74 5.46 -17.82 -0.10 1.64 15 13 N -0.89 -23.92 13.29 55.43 0.74 -23.18 15 14 Si 0.91 20.13 29.54 -169.99 -5.02 15.11 15 15 H -0.28 -6.17 7.11 56.52 0.40 -5.76 15 16 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 17 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 18 C 0.46 8.65 7.95 -153.41 -1.22 7.43 15 19 N -0.85 -12.57 9.10 31.10 0.28 -12.29 15 20 H 0.13 1.14 8.14 -51.92 -0.42 0.71 15 21 H 0.12 0.83 8.14 -51.92 -0.42 0.41 15 22 H 0.12 1.01 7.56 -51.92 -0.39 0.62 15 23 H 0.19 2.81 8.06 -52.49 -0.42 2.38 15 24 H 0.06 1.53 8.14 -51.93 -0.42 1.10 15 25 H 0.05 1.14 7.49 -51.93 -0.39 0.75 15 26 H 0.27 6.86 8.31 -40.82 -0.34 6.52 15 27 H 0.41 4.76 7.45 -40.82 -0.30 4.45 15 28 H 0.41 6.02 8.09 -40.82 -0.33 5.69 15 LS Contribution 266.17 15.07 4.01 4.01 Total: -1.00 -33.16 266.17 -6.11 -39.26 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -2.65 Total: 6.90 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: -1.01 Total: -17.30 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: 1.18 Total: -49.41 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -2.01 Total: -32.28 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: 34.31 SS G_CDS: -0.60 Total: 33.71 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -33.16 -6.11 -39.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087196330.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.608 kcal (2) G-P(sol) polarization free energy of solvation -33.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds