Wall clock time and date at job start Mon Mar 30 2020 21:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46891 * 111.00319 * 2 1 4 4 H 1.09000 * 110.45862 * 325.69841 * 3 2 1 5 5 C 1.51141 * 110.51702 * 203.08392 * 3 2 1 6 6 C 1.37417 * 133.08312 * 61.14862 * 5 3 2 7 7 C 1.38413 * 120.00908 * 180.11841 * 6 5 3 8 8 C 1.38339 * 119.83985 * 0.07844 * 7 6 5 9 9 C 1.37900 * 120.38587 * 0.02562 * 8 7 6 10 10 C 1.50702 * 119.94335 * 180.02562 * 9 8 7 11 11 C 1.39287 * 106.16559 * 241.40243 * 5 3 2 12 12 N 1.39388 * 110.27217 * 359.88172 * 11 5 3 13 13 C 1.37141 * 123.86141 * 180.11169 * 12 11 5 14 14 H 1.07995 * 120.00336 * 319.46594 * 13 12 11 15 15 C 1.38893 * 119.99789 * 139.46539 * 13 12 11 16 16 N 1.31423 * 119.99978 * 345.18566 * 15 13 12 17 17 Si 1.86800 * 120.00031 * 165.18537 * 15 13 12 18 18 H 1.48496 * 109.47200 * 59.99696 * 17 15 13 19 19 H 1.48495 * 109.47046 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46850 * 299.99892 * 17 15 13 21 21 C 1.34371 * 112.27787 * 0.07565 * 12 11 5 22 22 O 1.21282 * 126.43916 * 180.02562 * 21 12 11 23 23 H 1.09003 * 109.46576 * 60.00019 * 1 2 3 24 24 H 1.09001 * 109.47222 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47130 * 300.00244 * 1 2 3 26 26 H 1.00904 * 110.99733 * 236.04042 * 2 1 3 27 27 H 1.08001 * 119.95229 * 0.18854 * 6 5 3 28 28 H 1.07993 * 120.08227 * 180.10629 * 7 6 5 29 29 H 1.08006 * 119.80550 * 180.02562 * 8 7 6 30 30 H 1.08996 * 109.47414 * 264.42370 * 10 9 8 31 31 H 1.09003 * 109.46667 * 24.42286 * 10 9 8 32 32 H 1.08999 * 109.47294 * 144.42124 * 10 9 8 33 33 H 0.97003 * 119.99546 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 1 1.3445 2.0294 -0.5755 5 6 3.4011 1.3991 -0.5550 6 6 3.9354 1.0605 -1.7749 7 6 5.2952 1.1940 -1.9962 8 6 6.1137 1.6672 -0.9862 9 6 5.5830 2.0064 0.2405 10 6 6.4837 2.5214 1.3334 11 6 4.2138 1.8751 0.4711 12 7 3.4504 2.1471 1.6052 13 6 3.9704 2.6310 2.7783 14 1 4.9127 2.2541 3.1474 15 6 3.2850 3.6059 3.4917 16 7 2.3064 4.2720 2.9207 17 14 3.7541 3.9704 5.2627 18 1 5.1701 4.4140 5.3185 19 1 2.8781 5.0444 5.7958 20 1 3.5873 2.7428 6.0816 21 6 2.1467 1.8817 1.4173 22 8 1.2580 2.0245 2.2302 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8306 -0.5262 -0.7814 27 1 3.2934 0.6913 -2.5610 28 1 5.7161 0.9299 -2.9550 29 1 7.1746 1.7715 -1.1596 30 1 6.7705 1.6972 1.9865 31 1 7.3771 2.9617 0.8905 32 1 5.9553 3.2778 1.9136 33 1 1.8280 4.9531 3.4189 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104888310.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:12:22 Heat of formation + Delta-G solvation = 13.224847 kcal Electronic energy + Delta-G solvation = -18175.432484 eV Core-core repulsion = 15394.492993 eV Total energy + Delta-G solvation = -2780.939491 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.55972 -37.36379 -35.45098 -34.58488 -32.54047 -31.95901 -29.20851 -27.01239 -26.44092 -24.64401 -23.45258 -21.32073 -20.24079 -19.72578 -17.30868 -16.20471 -15.60998 -15.31506 -14.79782 -14.64622 -14.17855 -13.67930 -13.59097 -13.16611 -12.78986 -12.56052 -12.37938 -11.93925 -11.86345 -11.54820 -11.34766 -11.31998 -11.10521 -10.93353 -10.52883 -10.41184 -10.13494 -9.48743 -8.93553 -8.57752 -8.23395 -7.81187 -6.86131 -6.35860 -4.13064 1.92385 2.05542 3.18022 3.24910 3.26692 3.76869 4.05833 4.59913 4.62024 4.89776 5.02210 5.13699 5.40660 5.51225 5.54935 5.69975 5.75808 5.86257 5.96819 6.06340 6.23438 6.31548 6.40357 6.50567 6.57506 6.91284 7.05759 7.07637 7.24315 7.28088 7.37756 7.57521 7.69047 8.00283 8.59994 8.82575 9.21141 9.88737 10.69520 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.019544 B = 0.011317 C = 0.007573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.296253 B = 2473.641353 C = 3696.426418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.665 5.665 3 C 0.097 3.903 4 H 0.076 0.924 5 C -0.186 4.186 6 C -0.063 4.063 7 C -0.186 4.186 8 C -0.082 4.082 9 C -0.122 4.122 10 C -0.112 4.112 11 C 0.190 3.810 12 N -0.380 5.380 13 C -0.365 4.365 14 H 0.099 0.901 15 C 0.060 3.940 16 N -0.833 5.833 17 Si 0.924 3.076 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.270 1.270 21 C 0.523 3.477 22 O -0.483 6.483 23 H 0.018 0.982 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.342 0.658 27 H 0.109 0.891 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.092 0.908 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.536 -4.635 -7.677 9.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.298 5.298 3 C -0.015 4.015 4 H 0.093 0.907 5 C -0.191 4.191 6 C -0.082 4.082 7 C -0.206 4.206 8 C -0.101 4.101 9 C -0.126 4.126 10 C -0.168 4.168 11 C 0.086 3.914 12 N -0.085 5.085 13 C -0.491 4.491 14 H 0.116 0.884 15 C -0.151 4.151 16 N -0.464 5.464 17 Si 0.749 3.251 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.195 1.195 21 C 0.310 3.690 22 O -0.356 6.356 23 H 0.037 0.963 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.160 0.840 27 H 0.127 0.873 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.111 0.889 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.816 -4.388 -6.281 8.163 hybrid contribution -0.052 0.573 -0.227 0.619 sum 2.764 -3.815 -6.508 8.034 Atomic orbital electron populations 1.22321 0.87428 1.01414 1.01120 1.60159 1.07833 1.11980 1.49788 1.20918 0.93013 0.90863 0.96749 0.90662 1.19771 0.94366 1.09751 0.95187 1.19886 0.94897 0.98968 0.94480 1.20599 0.93211 1.07611 0.99203 1.20622 0.98777 0.98355 0.92343 1.19103 0.91489 1.05587 0.96403 1.20896 0.97398 1.01588 0.96952 1.18647 0.91996 0.93913 0.86830 1.41400 1.06014 1.52027 1.09077 1.19318 1.09791 1.22017 0.97953 0.88376 1.25397 0.95670 0.94033 1.00003 1.69861 1.19898 1.19686 1.36953 0.86072 0.78342 0.78331 0.82309 1.19629 1.20769 1.19526 1.19831 0.83008 0.78524 0.87662 1.90541 1.43579 1.51278 1.50209 0.96337 0.91654 0.90493 0.83966 0.87276 0.86848 0.86703 0.92526 0.93377 0.88898 0.91757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.54 60.07 0.63 1.06 16 2 N -0.67 -12.20 6.69 -115.89 -0.78 -12.97 16 3 C 0.10 2.07 3.30 -69.46 -0.23 1.84 16 4 H 0.08 1.57 7.85 -51.93 -0.41 1.16 16 5 C -0.19 -3.78 5.74 -104.32 -0.60 -4.38 16 6 C -0.06 -1.05 9.91 -39.82 -0.39 -1.44 16 7 C -0.19 -2.89 10.07 -39.48 -0.40 -3.29 16 8 C -0.08 -1.36 9.64 -39.67 -0.38 -1.75 16 9 C -0.12 -2.43 5.91 -104.29 -0.62 -3.05 16 10 C -0.11 -2.07 8.60 36.01 0.31 -1.76 16 11 C 0.19 4.35 6.62 -83.58 -0.55 3.80 16 12 N -0.38 -10.04 2.76 -58.71 -0.16 -10.20 16 13 C -0.36 -9.87 7.54 -14.93 -0.11 -9.99 16 14 H 0.10 2.50 6.25 -52.49 -0.33 2.17 16 15 C 0.06 1.65 4.88 -17.48 -0.09 1.57 16 16 N -0.83 -24.28 11.49 55.49 0.64 -23.64 16 17 Si 0.92 21.02 29.58 -169.99 -5.03 15.99 16 18 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 21 C 0.52 13.95 7.04 -10.83 -0.08 13.87 16 22 O -0.48 -14.36 15.22 5.56 0.08 -14.27 16 23 H 0.02 0.26 8.08 -51.93 -0.42 -0.16 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.08 1.44 7.59 -51.93 -0.39 1.05 16 26 H 0.34 5.29 8.42 -39.29 -0.33 4.96 16 27 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 28 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 29 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 30 H 0.06 1.00 8.06 -51.93 -0.42 0.58 16 31 H 0.05 0.74 8.04 -51.93 -0.42 0.32 16 32 H 0.09 1.96 5.79 -51.93 -0.30 1.66 16 33 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 277.54 15.07 4.18 4.18 Total: -1.00 -31.62 277.54 -7.41 -39.03 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -3.84 Total: 5.39 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -2.50 Total: -3.51 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: -0.30 Total: -46.81 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: 0.08 Total: -14.27 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.62 -7.41 -39.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104888310.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.251 kcal (2) G-P(sol) polarization free energy of solvation -31.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds