Wall clock time and date at job start Mon Mar 30 2020 21:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.82341 * 2 1 4 4 C 1.54382 * 109.83335 * 120.89192 * 2 1 3 5 5 C 1.55299 * 102.25335 * 140.87232 * 4 2 1 6 6 H 1.08998 * 111.13062 * 83.78287 * 5 4 2 7 7 S 1.81402 * 111.12168 * 207.94810 * 5 4 2 8 8 O 1.42097 * 109.47445 * 58.61085 * 7 5 4 9 9 C 1.81402 * 102.99891 * 175.00066 * 7 5 4 10 10 C 1.52998 * 109.47255 * 180.02562 * 9 7 5 11 11 C 1.50700 * 109.47425 * 179.97438 * 10 9 7 12 12 H 1.07994 * 119.99925 * 359.97438 * 11 10 9 13 13 C 1.37881 * 120.00339 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99648 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00220 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47351 * 90.00068 * 15 13 11 17 17 H 1.48503 * 109.47274 * 210.00242 * 15 13 11 18 18 H 1.48500 * 109.46934 * 330.00012 * 15 13 11 19 19 C 1.54944 * 100.94354 * 325.86335 * 5 4 2 20 20 O 1.43236 * 109.83198 * 239.02603 * 2 1 3 21 21 H 1.09002 * 109.47153 * 299.10872 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.11063 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.11044 * 1 2 3 24 24 H 1.09000 * 109.46883 * 60.70442 * 3 2 1 25 25 H 1.09003 * 109.47034 * 180.69641 * 3 2 1 26 26 H 1.08998 * 109.47643 * 300.70607 * 3 2 1 27 27 H 1.09001 * 110.84566 * 259.06095 * 4 2 1 28 28 H 1.08998 * 110.84662 * 22.67523 * 4 2 1 29 29 H 1.08999 * 109.47106 * 299.99830 * 9 7 5 30 30 H 1.08997 * 109.47423 * 59.99560 * 9 7 5 31 31 H 1.09006 * 109.47079 * 299.99554 * 10 9 7 32 32 H 1.08997 * 109.47364 * 59.99402 * 10 9 7 33 33 H 0.96998 * 120.00041 * 179.97438 * 14 13 11 34 34 H 1.09000 * 110.31270 * 155.35941 * 19 5 4 35 35 H 1.08997 * 110.31368 * 277.43130 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0488 1.4394 0.0000 4 6 2.0538 -0.7456 1.2462 5 6 3.2730 -1.5215 0.6778 6 1 4.1621 -0.8915 0.6512 7 16 3.5796 -3.0398 1.6220 8 8 2.4235 -3.8650 1.5806 9 6 4.9221 -3.8329 0.6949 10 6 5.3028 -5.1496 1.3746 11 6 6.4176 -5.8088 0.6041 12 1 6.8146 -5.3360 -0.2820 13 6 6.9309 -7.0154 1.0304 14 7 6.4471 -7.5913 2.1093 15 14 8.3132 -7.8320 0.0757 16 1 9.6211 -7.3710 0.6066 17 1 8.2118 -9.3064 0.2214 18 1 8.2056 -7.4680 -1.3599 19 6 2.7747 -1.8450 -0.7532 20 8 2.0159 -0.6934 -1.1553 21 1 -0.3633 0.4999 0.8979 22 1 -0.3633 -1.0276 -0.0160 23 1 -0.3634 0.5276 -0.8819 24 1 1.6990 1.9517 0.8962 25 1 3.1388 1.4327 -0.0125 26 1 1.6784 1.9592 -0.8835 27 1 2.3672 -0.0410 2.0166 28 1 1.3012 -1.4337 1.6314 29 1 4.5911 -4.0329 -0.3241 30 1 5.7881 -3.1715 0.6723 31 1 5.6337 -4.9500 2.3939 32 1 4.4366 -5.8108 1.3969 33 1 6.8079 -8.4404 2.4091 34 1 3.6210 -1.9934 -1.4240 35 1 2.1416 -2.7321 -0.7419 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705495607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:06:46 Heat of formation + Delta-G solvation = -101.952570 kcal Electronic energy + Delta-G solvation = -16120.093158 eV Core-core repulsion = 13437.310400 eV Total energy + Delta-G solvation = -2682.782758 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.74799 -35.21612 -33.71347 -33.24914 -31.93055 -30.90927 -27.48721 -26.14798 -25.15430 -22.31062 -21.02281 -20.17686 -17.34263 -16.78069 -16.16050 -15.87298 -15.01057 -14.57169 -14.21854 -14.13510 -13.79974 -13.59310 -13.48195 -12.87292 -12.47072 -12.30854 -12.05561 -11.94260 -11.74495 -11.39987 -11.27603 -11.01054 -10.85813 -10.80671 -10.75164 -10.17107 -10.09752 -9.58968 -9.48059 -9.04823 -8.43346 -7.75989 -6.06406 -4.10666 1.89479 3.06898 3.28297 3.35010 3.38282 3.73650 4.18533 4.33567 4.41681 4.72884 4.74011 4.99867 5.04236 5.24620 5.28804 5.43884 5.52369 5.54266 5.59240 5.70988 5.75981 5.79688 5.91001 5.95491 6.04691 6.10720 6.17628 6.76716 7.02864 7.46504 7.58008 7.88636 8.29622 8.94022 9.53698 11.04245 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.051097 B = 0.004694 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.840632 B = 5963.225538 C = 6204.271218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.102 3.898 3 C -0.150 4.150 4 C -0.117 4.117 5 C -0.459 4.459 6 H 0.130 0.870 7 S 1.232 4.768 8 O -0.845 6.845 9 C -0.414 4.414 10 C 0.038 3.962 11 C -0.519 4.519 12 H 0.057 0.943 13 C 0.058 3.942 14 N -0.893 5.893 15 Si 0.895 3.105 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.065 3.935 20 O -0.374 6.374 21 H 0.066 0.934 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.106 0.894 31 H 0.028 0.972 32 H 0.023 0.977 33 H 0.263 0.737 34 H 0.087 0.913 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.315 17.497 0.331 18.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.062 3.938 3 C -0.207 4.207 4 C -0.155 4.155 5 C -0.573 4.573 6 H 0.148 0.852 7 S 1.431 4.569 8 O -0.841 6.841 9 C -0.554 4.554 10 C 0.000 4.000 11 C -0.559 4.559 12 H 0.075 0.925 13 C -0.144 4.144 14 N -0.531 5.531 15 Si 0.723 3.277 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.013 4.013 20 O -0.294 6.294 21 H 0.085 0.915 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.110 0.890 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.124 0.876 31 H 0.047 0.953 32 H 0.041 0.959 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.856 17.126 1.048 18.477 hybrid contribution 0.349 -1.079 -2.504 2.749 sum -6.507 16.047 -1.456 17.377 Atomic orbital electron populations 1.22126 0.94390 1.02679 1.02162 1.22086 0.93803 0.92654 0.85240 1.22057 1.01800 0.94772 1.02110 1.22902 0.95823 0.98952 0.97868 1.29618 1.04189 1.18084 1.05405 0.85190 1.70271 0.90478 0.88300 1.07818 1.93095 1.45691 1.64307 1.80984 1.27572 1.10242 1.08611 1.08925 1.18794 0.97297 0.88155 0.95775 1.21142 1.18179 1.05330 1.11231 0.92471 1.25041 0.97102 0.97115 0.95165 1.69959 1.42107 1.17718 1.23364 0.86540 0.82245 0.78624 0.80289 1.20469 1.21131 1.19922 1.23409 0.94985 0.89268 0.93590 1.88366 1.70809 1.40066 1.30143 0.91466 0.92110 0.92042 0.91513 0.91950 0.92162 0.88981 0.90019 0.90741 0.87568 0.95340 0.95864 0.92762 0.89456 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 8.74 37.16 0.32 -1.38 16 2 C 0.10 1.22 1.27 -89.90 -0.11 1.11 16 3 C -0.15 -1.43 8.73 37.16 0.32 -1.10 16 4 C -0.12 -1.34 5.58 -24.79 -0.14 -1.48 16 5 C -0.46 -5.77 3.62 -24.49 -0.09 -5.86 16 6 H 0.13 1.29 8.14 -51.93 -0.42 0.87 16 7 S 1.23 18.94 12.73 -107.50 -1.37 17.57 16 8 O -0.85 -18.26 17.61 -35.23 -0.62 -18.88 16 9 C -0.41 -7.85 5.67 37.16 0.21 -7.64 16 10 C 0.04 0.97 4.98 -27.88 -0.14 0.83 16 11 C -0.52 -14.49 9.11 -34.44 -0.31 -14.81 16 12 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 15 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 19 C 0.06 0.97 6.98 38.18 0.27 1.24 16 20 O -0.37 -5.65 10.68 -35.23 -0.38 -6.03 16 21 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.09 0.77 7.82 -51.93 -0.41 0.36 16 28 H 0.08 1.04 7.61 -51.93 -0.40 0.64 16 29 H 0.07 1.48 8.05 -51.92 -0.42 1.06 16 30 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.06 1.07 7.68 -51.93 -0.40 0.67 16 LS Contribution 302.08 15.07 4.55 4.55 Total: -1.00 -35.21 302.08 -7.67 -42.88 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -5.81 Total: -3.09 kcal Atomic # 6 Polarization: -27.78 SS G_CDS: 0.24 Total: -27.54 kcal Atomic # 7 Polarization: -26.62 SS G_CDS: 0.74 Total: -25.88 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -1.00 Total: -24.90 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 18.94 SS G_CDS: -1.37 Total: 17.57 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -35.21 -7.67 -42.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705495607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.072 kcal (2) G-P(sol) polarization free energy of solvation -35.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds