Wall clock time and date at job start Mon Mar 30 2020 21:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.82341 * 2 1 4 4 C 1.54382 * 109.83335 * 120.89192 * 2 1 3 5 5 C 1.55299 * 102.25335 * 140.87232 * 4 2 1 6 6 H 1.08998 * 111.13062 * 83.78287 * 5 4 2 7 7 S 1.81402 * 111.12168 * 207.94810 * 5 4 2 8 8 O 1.42097 * 109.47445 * 58.61085 * 7 5 4 9 9 C 1.81402 * 102.99891 * 175.00066 * 7 5 4 10 10 C 1.52998 * 109.47255 * 180.02562 * 9 7 5 11 11 C 1.50700 * 109.47425 * 179.97438 * 10 9 7 12 12 H 1.07994 * 119.99925 * 359.97438 * 11 10 9 13 13 C 1.37881 * 120.00339 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99648 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00220 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47351 * 90.00068 * 15 13 11 17 17 H 1.48503 * 109.47274 * 210.00242 * 15 13 11 18 18 H 1.48500 * 109.46934 * 330.00012 * 15 13 11 19 19 C 1.54944 * 100.94354 * 325.86335 * 5 4 2 20 20 O 1.43236 * 109.83198 * 239.02603 * 2 1 3 21 21 H 1.09002 * 109.47153 * 299.10872 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.11063 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.11044 * 1 2 3 24 24 H 1.09000 * 109.46883 * 60.70442 * 3 2 1 25 25 H 1.09003 * 109.47034 * 180.69641 * 3 2 1 26 26 H 1.08998 * 109.47643 * 300.70607 * 3 2 1 27 27 H 1.09001 * 110.84566 * 259.06095 * 4 2 1 28 28 H 1.08998 * 110.84662 * 22.67523 * 4 2 1 29 29 H 1.08999 * 109.47106 * 299.99830 * 9 7 5 30 30 H 1.08997 * 109.47423 * 59.99560 * 9 7 5 31 31 H 1.09006 * 109.47079 * 299.99554 * 10 9 7 32 32 H 1.08997 * 109.47364 * 59.99402 * 10 9 7 33 33 H 0.96998 * 120.00041 * 179.97438 * 14 13 11 34 34 H 1.09000 * 110.31270 * 155.35941 * 19 5 4 35 35 H 1.08997 * 110.31368 * 277.43130 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0488 1.4394 0.0000 4 6 2.0538 -0.7456 1.2462 5 6 3.2730 -1.5215 0.6778 6 1 4.1621 -0.8915 0.6512 7 16 3.5796 -3.0398 1.6220 8 8 2.4235 -3.8650 1.5806 9 6 4.9221 -3.8329 0.6949 10 6 5.3028 -5.1496 1.3746 11 6 6.4176 -5.8088 0.6041 12 1 6.8146 -5.3360 -0.2820 13 6 6.9309 -7.0154 1.0304 14 7 6.4471 -7.5913 2.1093 15 14 8.3132 -7.8320 0.0757 16 1 9.6211 -7.3710 0.6066 17 1 8.2118 -9.3064 0.2214 18 1 8.2056 -7.4680 -1.3599 19 6 2.7747 -1.8450 -0.7532 20 8 2.0159 -0.6934 -1.1553 21 1 -0.3633 0.4999 0.8979 22 1 -0.3633 -1.0276 -0.0160 23 1 -0.3634 0.5276 -0.8819 24 1 1.6990 1.9517 0.8962 25 1 3.1388 1.4327 -0.0125 26 1 1.6784 1.9592 -0.8835 27 1 2.3672 -0.0410 2.0166 28 1 1.3012 -1.4337 1.6314 29 1 4.5911 -4.0329 -0.3241 30 1 5.7881 -3.1715 0.6723 31 1 5.6337 -4.9500 2.3939 32 1 4.4366 -5.8108 1.3969 33 1 6.8079 -8.4404 2.4091 34 1 3.6210 -1.9934 -1.4240 35 1 2.1416 -2.7321 -0.7419 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705495607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:06:46 Heat of formation + Delta-G solvation = -127.503794 kcal Electronic energy + Delta-G solvation = -16121.201142 eV Core-core repulsion = 13437.310400 eV Total energy + Delta-G solvation = -2683.890742 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.76959 -36.79365 -35.73792 -34.21252 -33.03251 -32.82813 -28.25903 -27.56685 -26.75320 -23.67926 -22.67518 -21.12287 -18.79391 -18.53458 -17.46898 -17.01142 -16.53375 -16.10335 -15.71726 -15.57940 -15.01956 -14.64656 -14.58048 -14.28527 -13.90894 -13.62181 -13.28267 -13.10155 -12.93311 -12.81433 -12.63534 -12.58134 -12.31761 -12.01410 -11.97171 -11.82502 -11.72411 -11.48458 -10.70058 -10.65252 -10.59310 -9.18187 -8.21920 -6.34903 0.58745 1.39651 1.41446 1.51964 1.75832 2.39797 2.73250 2.86441 3.10598 3.30639 3.71604 3.87500 4.02143 4.11449 4.20578 4.30146 4.47940 4.50780 4.57559 4.69348 4.77568 4.85083 4.90391 4.96916 5.01789 5.02984 5.22549 5.40294 5.42387 5.51033 5.76714 6.01744 6.17340 6.80079 7.34662 8.89109 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.051097 B = 0.004694 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.840632 B = 5963.225538 C = 6204.271218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.089 3.911 3 C -0.145 4.145 4 C -0.119 4.119 5 C -0.442 4.442 6 H 0.175 0.825 7 S 1.295 4.705 8 O -0.913 6.913 9 C -0.418 4.418 10 C 0.036 3.964 11 C -0.541 4.541 12 H 0.064 0.936 13 C -0.001 4.001 14 N -0.933 5.933 15 Si 0.967 3.033 16 H -0.263 1.263 17 H -0.285 1.285 18 H -0.267 1.267 19 C 0.058 3.942 20 O -0.393 6.393 21 H 0.093 0.907 22 H 0.036 0.964 23 H 0.063 0.937 24 H 0.093 0.907 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.136 0.864 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.142 0.858 31 H 0.026 0.974 32 H -0.025 1.025 33 H 0.265 0.735 34 H 0.095 0.905 35 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.028 20.187 0.253 20.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.049 3.951 3 C -0.202 4.202 4 C -0.157 4.157 5 C -0.559 4.559 6 H 0.192 0.808 7 S 1.497 4.503 8 O -0.909 6.909 9 C -0.556 4.556 10 C -0.002 4.002 11 C -0.580 4.580 12 H 0.082 0.918 13 C -0.199 4.199 14 N -0.573 5.573 15 Si 0.791 3.209 16 H -0.188 1.188 17 H -0.211 1.211 18 H -0.192 1.192 19 C -0.019 4.019 20 O -0.313 6.313 21 H 0.112 0.888 22 H 0.055 0.945 23 H 0.082 0.918 24 H 0.112 0.888 25 H 0.086 0.914 26 H 0.076 0.924 27 H 0.154 0.846 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.160 0.840 31 H 0.044 0.956 32 H -0.007 1.007 33 H 0.074 0.926 34 H 0.113 0.887 35 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -5.552 19.793 0.975 20.580 hybrid contribution -0.161 -1.800 -2.503 3.087 sum -5.713 17.993 -1.528 18.940 Atomic orbital electron populations 1.22168 0.94118 1.01567 1.03653 1.22451 0.94321 0.94007 0.84291 1.22052 1.02134 0.92656 1.03398 1.23052 0.94551 0.99265 0.98853 1.29518 1.06763 1.16391 1.03229 0.80795 1.69442 0.87338 0.87283 1.06259 1.92980 1.48436 1.66932 1.82533 1.27518 1.13594 1.06694 1.07810 1.18651 0.94834 0.90489 0.96272 1.21644 1.18769 1.05981 1.11638 0.91768 1.26019 0.99856 0.97910 0.96125 1.70096 1.43781 1.18266 1.25139 0.85416 0.79266 0.77239 0.78947 1.18788 1.21093 1.19187 1.23375 0.94709 0.88454 0.95396 1.88361 1.71019 1.39860 1.32061 0.88824 0.94486 0.91789 0.88793 0.91355 0.92434 0.84605 0.91899 0.92130 0.84004 0.95586 1.00696 0.92595 0.88681 0.95658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 8.74 71.98 0.63 -2.57 16 2 C 0.09 1.90 1.27 -10.32 -0.01 1.89 16 3 C -0.15 -2.17 8.73 71.98 0.63 -1.54 16 4 C -0.12 -2.37 5.58 31.85 0.18 -2.19 16 5 C -0.44 -9.94 3.62 32.05 0.12 -9.83 16 6 H 0.17 2.53 8.14 -2.39 -0.02 2.51 16 7 S 1.30 39.08 12.73 -56.49 -0.72 38.36 16 8 O -0.91 -40.90 17.61 -148.98 -2.62 -43.52 16 9 C -0.42 -15.76 5.67 71.98 0.41 -15.35 16 10 C 0.04 1.86 4.98 29.85 0.15 2.01 16 11 C -0.54 -30.57 9.11 25.60 0.23 -30.34 16 12 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 13 C 0.00 -0.06 5.46 84.65 0.46 0.41 16 14 N -0.93 -56.94 13.29 21.45 0.28 -56.65 16 15 Si 0.97 44.02 29.54 68.60 2.03 46.05 16 16 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 17 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 19 C 0.06 1.71 6.98 72.65 0.51 2.22 16 20 O -0.39 -11.38 10.68 -148.98 -1.59 -12.97 16 21 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 24 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.14 1.54 7.82 -2.39 -0.02 1.52 16 28 H 0.06 1.52 7.61 -2.39 -0.02 1.50 16 29 H 0.06 2.43 8.05 -2.39 -0.02 2.41 16 30 H 0.14 4.25 8.14 -2.39 -0.02 4.23 16 31 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 32 H -0.03 -1.55 8.14 -2.39 -0.02 -1.57 16 33 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 34 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.03 0.92 7.68 -2.39 -0.02 0.90 16 Total: -1.00 -80.14 302.08 1.72 -78.42 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: 1.04 Total: 5.60 kcal Atomic # 6 Polarization: -58.59 SS G_CDS: 3.30 Total: -55.29 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: 0.28 Total: -56.65 kcal Atomic # 8 Polarization: -52.28 SS G_CDS: -4.21 Total: -56.49 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: 39.08 SS G_CDS: -0.72 Total: 38.36 kcal Total: -80.14 1.72 -78.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705495607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.082 kcal (2) G-P(sol) polarization free energy of solvation -80.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds