Wall clock time and date at job start Mon Mar 30 2020 21:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86800 * 119.99888 * 2 1 4 4 H 1.48507 * 109.47153 * 274.65736 * 3 2 1 5 5 H 1.48504 * 109.47060 * 34.65488 * 3 2 1 6 6 H 1.48497 * 109.47166 * 154.65895 * 3 2 1 7 7 C 1.39919 * 120.00148 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00276 * 162.15862 * 7 2 1 9 9 C 1.41187 * 120.00010 * 342.15833 * 7 2 1 10 10 C 1.40848 * 120.17244 * 155.13139 * 9 7 2 11 11 C 1.36406 * 119.81799 * 180.02562 * 10 9 7 12 12 C 1.39383 * 120.18161 * 359.97438 * 11 10 9 13 13 N 1.39671 * 119.83170 * 180.02562 * 12 11 10 14 14 C 1.37020 * 127.18566 * 310.02794 * 13 12 11 15 15 N 1.30305 * 107.28814 * 179.75571 * 14 13 12 16 16 N 1.28503 * 110.18165 * 0.24062 * 15 14 13 17 17 C 1.31297 * 109.93369 * 359.97438 * 16 15 14 18 18 S 1.76201 * 126.50924 * 179.97438 * 17 16 15 19 19 C 1.39392 * 120.34717 * 0.27517 * 12 11 10 20 20 C 1.36416 * 120.17520 * 359.44494 * 19 12 11 21 21 H 0.97001 * 120.00821 * 0.02562 * 1 2 3 22 22 H 1.07996 * 120.08766 * 0.02562 * 10 9 7 23 23 H 1.08001 * 119.91162 * 180.02562 * 11 10 9 24 24 H 1.07996 * 126.35692 * 0.02562 * 14 13 12 25 25 H 1.41002 * 99.99981 * 90.02306 * 18 17 16 26 26 H 1.08005 * 119.90818 * 179.70441 * 19 12 11 27 27 H 1.08002 * 120.08769 * 180.26980 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.3915 2.1033 -1.3955 5 1 1.4926 2.6223 0.7961 6 1 3.5858 1.4138 0.5992 7 6 2.0082 -1.2117 -0.0005 8 1 3.0492 -1.2341 -0.2871 9 6 1.3532 -2.4052 0.3736 10 6 1.8227 -3.6474 -0.0959 11 6 1.1840 -4.7960 0.2697 12 6 0.0701 -4.7427 1.1058 13 7 -0.5779 -5.9233 1.4759 14 6 -1.0005 -6.9305 0.6486 15 7 -1.5487 -7.8438 1.3991 16 7 -1.5081 -7.4869 2.6329 17 6 -0.9259 -6.3150 2.7409 18 16 -0.6417 -5.4190 4.2312 19 6 -0.4038 -3.5169 1.5704 20 6 0.2272 -2.3598 1.2184 21 1 -0.4851 0.8400 -0.0004 22 1 2.6859 -3.6904 -0.7434 23 1 1.5430 -5.7493 -0.0890 24 1 -0.8945 -6.9635 -0.4257 25 1 0.6299 -5.9192 4.5789 26 1 -1.2705 -3.4835 2.2141 27 1 -0.1385 -1.4112 1.5827 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051601708.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:03 Heat of formation + Delta-G solvation = 100.026421 kcal Electronic energy + Delta-G solvation = -14836.525088 eV Core-core repulsion = 12300.843461 eV Total energy + Delta-G solvation = -2535.681626 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 247.047 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.51717 -38.08284 -34.88632 -33.18819 -30.42487 -29.84435 -29.38859 -25.70023 -22.97705 -22.41334 -20.94177 -20.84906 -18.09842 -17.73002 -16.81346 -15.77136 -15.49421 -14.91488 -14.36867 -14.27966 -13.53811 -13.11446 -12.49937 -12.35524 -11.88543 -11.63170 -11.42062 -11.30263 -11.14328 -10.93759 -10.38180 -10.22515 -10.12815 -9.66002 -9.47891 -8.99494 -8.16243 -7.85143 -7.68428 -7.17457 -4.76291 1.34365 1.67202 2.33267 2.71075 2.71356 2.87379 2.90167 2.96105 3.18910 3.31337 3.64180 4.19268 5.00561 5.22928 5.50643 5.75570 5.82365 6.02605 6.20697 6.54503 6.64524 6.72370 6.89518 7.01081 7.17439 7.51892 7.62858 7.73962 7.83632 8.20151 8.44535 8.52165 8.92143 9.74811 Molecular weight = 247.05amu Principal moments of inertia in cm(-1) A = 0.040028 B = 0.005860 C = 0.005462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.338933 B = 4776.869969 C = 5124.912642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.073 3.927 3 Si 0.914 3.086 4 H -0.267 1.267 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.438 4.438 8 H 0.086 0.914 9 C 0.121 3.879 10 C -0.220 4.220 11 C -0.062 4.062 12 C -0.079 4.079 13 N -0.357 5.357 14 C 0.159 3.841 15 N -0.308 5.308 16 N -0.258 5.258 17 C 0.132 3.868 18 S -0.012 6.012 19 C -0.056 4.056 20 C -0.161 4.161 21 H 0.289 0.711 22 H 0.104 0.896 23 H 0.095 0.905 24 H 0.217 0.783 25 H 0.096 0.904 26 H 0.101 0.899 27 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.594 -1.131 1.866 2.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.148 4.148 3 Si 0.737 3.263 4 H -0.192 1.192 5 H -0.196 1.196 6 H -0.181 1.181 7 C -0.465 4.465 8 H 0.104 0.896 9 C 0.118 3.882 10 C -0.240 4.240 11 C -0.082 4.082 12 C -0.170 4.170 13 N -0.040 5.040 14 C -0.129 4.129 15 N -0.151 5.151 16 N -0.105 5.105 17 C -0.242 4.242 18 S 0.138 5.862 19 C -0.076 4.076 20 C -0.181 4.181 21 H 0.100 0.900 22 H 0.122 0.878 23 H 0.113 0.887 24 H 0.233 0.767 25 H 0.060 0.940 26 H 0.119 0.881 27 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.633 -1.653 2.966 3.454 hybrid contribution 1.613 1.011 -1.296 2.303 sum 2.246 -0.642 1.669 2.871 Atomic orbital electron populations 1.69804 1.07847 1.30365 1.31226 1.26078 0.94860 1.02019 0.91875 0.86181 0.80801 0.79805 0.79479 1.19170 1.19582 1.18055 1.19791 0.98439 0.91140 1.37120 0.89568 1.17774 0.90647 0.92166 0.87642 1.20599 1.04153 0.92150 1.07056 1.20094 0.93540 0.97685 0.96840 1.17083 1.02013 0.82223 1.15721 1.44314 1.38367 1.15868 1.05469 1.26770 0.99675 0.86711 0.99771 1.73980 1.19514 1.24327 0.97325 1.74623 1.15862 1.08270 1.11755 1.25973 1.09623 0.98230 0.90328 1.86695 1.26484 1.54543 1.18492 1.20303 0.98377 0.90819 0.98085 1.20953 0.99410 0.96650 1.01106 0.89989 0.87797 0.88714 0.76682 0.93963 0.88090 0.85503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.47 10.98 55.55 0.61 -16.86 15 2 C 0.07 1.60 5.13 -17.34 -0.09 1.52 15 3 Si 0.91 16.29 29.60 -169.99 -5.03 11.26 15 4 H -0.27 -4.72 7.11 56.52 0.40 -4.32 15 5 H -0.27 -4.76 7.11 56.52 0.40 -4.36 15 6 H -0.26 -4.57 7.11 56.52 0.40 -4.16 15 7 C -0.44 -10.08 9.04 -37.83 -0.34 -10.42 15 8 H 0.09 1.88 7.91 -52.49 -0.41 1.47 15 9 C 0.12 2.82 5.57 -106.81 -0.59 2.22 15 10 C -0.22 -4.68 9.74 -39.26 -0.38 -5.06 15 11 C -0.06 -1.24 9.64 -39.82 -0.38 -1.62 15 12 C -0.08 -1.61 5.94 -83.43 -0.50 -2.11 15 13 N -0.36 -6.97 2.90 -61.67 -0.18 -7.15 15 14 C 0.16 2.84 12.52 -88.70 -1.11 1.73 15 15 N -0.31 -6.05 12.17 29.95 0.36 -5.69 15 16 N -0.26 -5.27 12.23 30.75 0.38 -4.89 15 17 C 0.13 2.57 8.21 -87.97 -0.72 1.85 15 18 S -0.01 -0.20 24.83 -107.50 -2.67 -2.87 15 19 C -0.06 -1.19 8.89 -39.81 -0.35 -1.55 15 20 C -0.16 -3.70 8.64 -39.25 -0.34 -4.04 15 21 H 0.29 5.91 8.30 -40.82 -0.34 5.57 15 22 H 0.10 2.05 8.06 -52.49 -0.42 1.62 15 23 H 0.09 1.68 8.06 -52.49 -0.42 1.26 15 24 H 0.22 2.99 8.06 -52.49 -0.42 2.57 15 25 H 0.10 1.39 9.55 96.90 0.93 2.32 15 26 H 0.10 2.07 7.64 -52.48 -0.40 1.67 15 27 H 0.13 2.99 6.18 -52.49 -0.32 2.67 15 LS Contribution 261.08 15.07 3.93 3.93 Total: -1.00 -25.41 261.08 -8.02 -33.43 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -0.62 Total: 6.31 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: -4.81 Total: -17.48 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 1.17 Total: -34.59 kcal Atomic # 14 Polarization: 16.29 SS G_CDS: -5.03 Total: 11.26 kcal Atomic # 16 Polarization: -0.20 SS G_CDS: -2.67 Total: -2.87 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -25.41 -8.02 -33.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601708.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.458 kcal (2) G-P(sol) polarization free energy of solvation -25.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds