Wall clock time and date at job start Mon Mar 30 2020 21:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47361 * 2 1 4 4 C 1.53005 * 109.46921 * 300.00504 * 3 2 1 5 5 C 1.53005 * 109.47055 * 299.99583 * 4 3 2 6 6 S 1.81397 * 109.47162 * 180.02562 * 5 4 3 7 7 O 1.42105 * 110.54275 * 73.37517 * 6 5 4 8 8 O 1.42101 * 110.54298 * 296.62620 * 6 5 4 9 9 N 1.65599 * 104.44825 * 185.00003 * 6 5 4 10 10 C 1.36934 * 119.99793 * 65.00329 * 9 6 5 11 11 H 1.08001 * 120.00375 * 359.97438 * 10 9 6 12 12 C 1.38812 * 119.99820 * 179.97438 * 10 9 6 13 13 N 1.31624 * 119.99884 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 119.99902 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47348 * 90.00156 * 14 12 10 16 16 H 1.48507 * 109.46935 * 209.99683 * 14 12 10 17 17 H 1.48494 * 109.47182 * 329.99884 * 14 12 10 18 18 C 1.52998 * 109.46916 * 60.00414 * 5 4 3 19 19 C 1.53006 * 109.46748 * 239.99883 * 2 1 3 20 20 H 1.08994 * 109.47347 * 59.99811 * 1 2 3 21 21 H 1.08995 * 109.47009 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46826 * 300.00120 * 1 2 3 23 23 H 1.08998 * 109.47004 * 120.00567 * 2 1 3 24 24 H 1.08993 * 109.47021 * 180.02562 * 3 2 1 25 25 H 1.08998 * 109.46731 * 60.00083 * 3 2 1 26 26 H 1.09003 * 109.46865 * 180.02562 * 4 3 2 27 27 H 1.08993 * 109.47657 * 59.99810 * 4 3 2 28 28 H 1.09006 * 109.46977 * 300.00406 * 5 4 3 29 29 H 0.96999 * 120.00046 * 244.99555 * 9 6 5 30 30 H 0.97002 * 119.99634 * 179.97438 * 13 12 10 31 31 H 1.08998 * 109.47471 * 59.99575 * 18 5 4 32 32 H 1.09000 * 109.47249 * 180.02562 * 18 5 4 33 33 H 1.08998 * 109.46688 * 179.97438 * 19 2 1 34 34 H 1.08993 * 109.47186 * 300.00301 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5300 2.1637 -1.2492 5 6 2.0400 1.4425 -2.4986 6 16 1.4358 2.2981 -3.9796 7 8 2.1317 3.5229 -4.1667 8 8 0.0172 2.2444 -4.0427 9 7 1.9370 1.3472 -5.2394 10 6 1.4370 0.0804 -5.3820 11 1 0.7161 -0.2988 -4.6728 12 6 1.8566 -0.7165 -6.4383 13 7 1.3764 -1.9343 -6.5752 14 14 3.1029 -0.0605 -7.6655 15 1 4.4748 -0.3863 -7.1999 16 1 2.8685 -0.6865 -8.9916 17 1 2.9560 1.4126 -7.7806 18 6 1.5299 0.0000 -2.4986 19 6 2.0400 -0.7213 -1.2493 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8934 -0.5139 0.8899 24 1 3.1300 1.4424 -0.0005 25 1 1.6768 1.9562 0.8900 26 1 1.8938 3.1913 -1.2495 27 1 0.4401 2.1638 -1.2492 28 1 3.1300 1.4425 -2.4985 29 1 2.5846 1.6876 -5.8762 30 1 1.6694 -2.4910 -7.3135 31 1 0.4399 0.0000 -2.4984 32 1 1.8936 -0.5139 -3.3883 33 1 3.1300 -0.7209 -1.2495 34 1 1.6766 -1.7489 -1.2493 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407469607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:08:36 Heat of formation + Delta-G solvation = -91.559923 kcal Electronic energy + Delta-G solvation = -17394.842410 eV Core-core repulsion = 14647.084400 eV Total energy + Delta-G solvation = -2747.758010 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.103 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -38.69166 -36.08854 -34.96681 -34.78232 -31.80675 -31.49708 -30.42137 -26.63682 -24.25122 -22.48603 -22.10494 -18.81890 -18.48643 -18.02011 -16.52585 -15.96533 -15.30214 -14.85739 -14.39697 -14.37044 -13.55103 -13.18928 -12.97452 -12.76326 -12.55032 -12.31563 -11.87647 -11.47733 -11.39325 -11.16639 -11.11056 -10.95979 -10.88307 -10.80731 -10.62828 -10.40306 -10.26150 -10.09545 -9.94905 -9.52022 -9.17682 -8.41112 -6.40304 -3.89561 1.28540 3.10962 3.16804 3.19499 3.91577 4.13061 4.65247 4.83762 4.94077 5.01753 5.07474 5.19803 5.38903 5.53540 5.60312 5.72540 5.79596 5.85548 5.90445 6.00806 6.08685 6.18420 6.22766 6.32301 6.42497 6.54911 6.56810 6.77162 6.87115 6.98888 7.62761 8.27168 8.94141 9.06218 10.69628 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.026811 B = 0.009328 C = 0.007852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.094950 B = 3000.885026 C = 3565.015353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.093 4.093 3 C -0.103 4.103 4 C -0.107 4.107 5 C -0.599 4.599 6 S 2.568 3.432 7 O -1.004 7.004 8 O -0.962 6.962 9 N -0.986 5.986 10 C -0.289 4.289 11 H 0.131 0.869 12 C 0.048 3.952 13 N -0.874 5.874 14 Si 0.881 3.119 15 H -0.271 1.271 16 H -0.278 1.278 17 H -0.265 1.265 18 C -0.116 4.116 19 C -0.107 4.107 20 H 0.067 0.933 21 H 0.053 0.947 22 H 0.048 0.952 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.119 0.881 29 H 0.389 0.611 30 H 0.275 0.725 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.057 0.943 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.616 2.317 9.936 10.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.111 4.111 3 C -0.141 4.141 4 C -0.145 4.145 5 C -0.704 4.704 6 S 2.662 3.338 7 O -0.993 6.993 8 O -0.952 6.952 9 N -0.737 5.737 10 C -0.426 4.426 11 H 0.148 0.852 12 C -0.159 4.159 13 N -0.514 5.514 14 Si 0.708 3.292 15 H -0.196 1.196 16 H -0.203 1.203 17 H -0.191 1.191 18 C -0.154 4.154 19 C -0.145 4.145 20 H 0.086 0.914 21 H 0.072 0.928 22 H 0.067 0.933 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.137 0.863 29 H 0.223 0.777 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.135 0.865 33 H 0.076 0.924 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.004 2.982 9.966 10.594 hybrid contribution 1.405 -0.221 -0.586 1.538 sum 3.409 2.761 9.380 10.355 Atomic orbital electron populations 1.21980 0.95448 1.01750 1.02006 1.21109 0.95987 0.95795 0.98206 1.21445 1.00368 0.95536 0.96774 1.21335 1.01402 0.98166 0.93646 1.30812 1.10877 1.09506 1.19216 1.07736 0.75843 0.74585 0.75619 1.93432 1.75589 1.44883 1.85393 1.93495 1.28811 1.87142 1.85723 1.52049 1.57311 1.28930 1.35447 1.19200 1.21432 0.88331 1.13615 0.85204 1.25074 0.97861 0.94982 0.98029 1.69719 1.43013 1.07272 1.31427 0.86588 0.81631 0.79554 0.81477 1.19639 1.20294 1.19067 1.21836 1.01292 0.91478 1.00776 1.21514 1.00157 0.98669 0.94149 0.91385 0.92801 0.93326 0.91935 0.92091 0.92275 0.91710 0.90643 0.86297 0.77685 0.91503 0.90871 0.86532 0.92400 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.50 37.16 0.32 -1.68 16 2 C -0.09 -1.20 3.19 -90.61 -0.29 -1.49 16 3 C -0.10 -1.32 5.45 -26.73 -0.15 -1.46 16 4 C -0.11 -1.61 4.94 -26.73 -0.13 -1.74 16 5 C -0.60 -10.22 2.87 -26.73 -0.08 -10.30 16 6 S 2.57 53.81 5.07 -107.50 -0.55 53.27 16 7 O -1.00 -22.71 18.08 -57.54 -1.04 -23.75 16 8 O -0.96 -22.92 17.75 -57.54 -1.02 -23.95 16 9 N -0.99 -22.17 5.45 31.50 0.17 -22.00 16 10 C -0.29 -7.14 7.78 -15.06 -0.12 -7.26 16 11 H 0.13 3.30 6.07 -52.49 -0.32 2.98 16 12 C 0.05 1.21 5.50 -17.43 -0.10 1.12 16 13 N -0.87 -23.45 13.97 55.49 0.78 -22.68 16 14 Si 0.88 19.31 27.73 -169.99 -4.71 14.60 16 15 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 16 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.27 -5.64 6.52 56.52 0.37 -5.27 16 18 C -0.12 -2.03 3.61 -26.73 -0.10 -2.12 16 19 C -0.11 -1.57 5.45 -26.72 -0.15 -1.71 16 20 H 0.07 0.98 4.81 -51.93 -0.25 0.73 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.08 1.14 6.43 -51.93 -0.33 0.80 16 28 H 0.12 1.86 8.14 -51.92 -0.42 1.44 16 29 H 0.39 8.40 5.85 -34.47 -0.20 8.20 16 30 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.07 1.33 6.32 -51.93 -0.33 1.00 16 32 H 0.12 2.29 5.05 -51.93 -0.26 2.03 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 272.18 15.07 4.10 4.10 Total: -1.00 -29.33 272.18 -7.72 -37.05 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -4.67 Total: 10.00 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: -0.78 Total: -26.65 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.95 Total: -44.68 kcal Atomic # 8 Polarization: -45.63 SS G_CDS: -2.06 Total: -47.69 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.71 Total: 14.60 kcal Atomic # 16 Polarization: 53.81 SS G_CDS: -0.55 Total: 53.27 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.33 -7.72 -37.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407469607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.511 kcal (2) G-P(sol) polarization free energy of solvation -29.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds