Wall clock time and date at job start Mon Mar 30 2020 21:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47659 * 2 1 4 4 C 1.50706 * 109.47021 * 239.99822 * 2 1 3 5 5 H 1.07999 * 120.00597 * 244.56779 * 4 2 1 6 6 C 1.37876 * 119.99289 * 64.56750 * 4 2 1 7 7 N 1.31515 * 119.99581 * 196.16794 * 6 4 2 8 8 Si 1.86793 * 120.00518 * 16.16865 * 6 4 2 9 9 H 1.48506 * 109.46926 * 94.47127 * 8 6 4 10 10 H 1.48503 * 109.47300 * 214.46736 * 8 6 4 11 11 H 1.48497 * 109.47334 * 334.47336 * 8 6 4 12 12 N 1.46902 * 109.47321 * 120.00460 * 2 1 3 13 13 C 1.46453 * 110.95862 * 176.92592 * 12 2 1 14 14 C 1.53178 * 109.90979 * 196.83231 * 13 12 2 15 15 S 1.81816 * 108.81352 * 297.62020 * 14 13 12 16 16 O 1.42105 * 108.70329 * 166.48947 * 15 14 13 17 17 O 1.42095 * 108.70249 * 297.97603 * 15 14 13 18 18 C 1.81815 * 101.02040 * 52.23651 * 15 14 13 19 19 H 1.08997 * 109.60665 * 67.43742 * 18 15 14 20 20 C 1.52995 * 109.60269 * 187.92834 * 18 15 14 21 21 C 1.46471 * 110.99658 * 302.94754 * 12 2 1 22 22 H 1.09000 * 109.46984 * 306.56320 * 1 2 3 23 23 H 1.09003 * 109.47307 * 66.56133 * 1 2 3 24 24 H 1.09003 * 109.47709 * 186.56311 * 1 2 3 25 25 H 0.97008 * 120.00264 * 180.02562 * 7 6 4 26 26 H 1.09007 * 109.25121 * 76.78600 * 13 12 2 27 27 H 1.08992 * 109.53517 * 317.05818 * 13 12 2 28 28 H 1.09001 * 109.60351 * 177.77794 * 14 13 12 29 29 H 1.09008 * 109.60224 * 57.45828 * 14 13 12 30 30 H 1.08998 * 109.47470 * 59.99389 * 20 18 15 31 31 H 1.09004 * 109.47295 * 179.97438 * 20 18 15 32 32 H 1.09000 * 109.46909 * 299.99812 * 20 18 15 33 33 H 1.09003 * 109.39630 * 42.87134 * 21 12 2 34 34 H 1.08998 * 109.33353 * 283.08678 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5910 -1.6296 -1.1332 6 6 1.7785 -0.1870 -2.4805 7 7 1.9247 -0.9382 -3.5500 8 14 1.2272 1.5892 -2.6550 9 1 2.4089 2.4514 -2.9111 10 1 0.2762 1.7031 -3.7899 11 1 0.5583 2.0252 -1.4030 12 7 2.0197 -0.6926 1.1994 13 6 3.4818 -0.7754 1.1961 14 6 3.9465 -1.8354 2.1996 15 16 3.4273 -1.3313 3.8675 16 8 3.5727 -2.4399 4.7446 17 8 4.0587 -0.0994 4.1884 18 6 1.6547 -1.0263 3.6025 19 1 1.1501 -1.9676 3.3846 20 6 1.0494 -0.3940 4.8573 21 6 1.4934 -0.0703 2.4164 22 1 -0.3633 0.6122 0.8254 23 1 -0.3634 0.4088 -0.9429 24 1 -0.3634 -1.0209 0.1175 25 1 1.7465 -0.5699 -4.4296 26 1 3.8973 0.1932 1.4743 27 1 3.8295 -1.0441 0.1987 28 1 5.0326 -1.9207 2.1648 29 1 3.4960 -2.7965 1.9512 30 1 1.5519 0.5502 5.0670 31 1 -0.0131 -0.2116 4.6959 32 1 1.1781 -1.0697 5.7028 33 1 0.4370 0.1596 2.2778 34 1 2.0411 0.8506 2.6166 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247137607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:06:54 Heat of formation + Delta-G solvation = -58.637366 kcal Electronic energy + Delta-G solvation = -17251.357040 eV Core-core repulsion = 14505.026660 eV Total energy + Delta-G solvation = -2746.330381 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.103 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.36041 -36.76675 -35.88195 -34.12893 -32.93163 -31.52540 -28.65496 -26.59074 -24.76335 -22.43798 -21.81748 -19.75251 -18.59891 -17.10763 -16.55822 -16.38847 -15.52558 -15.30108 -14.85183 -14.09817 -13.94429 -13.64320 -12.92711 -12.82548 -12.61698 -12.46048 -12.14972 -12.03675 -11.86278 -11.84087 -11.62493 -11.33555 -11.05766 -10.90400 -10.64444 -10.42457 -10.14349 -9.82056 -9.69972 -9.21650 -8.62078 -7.69800 -6.23324 -4.18657 0.21179 2.82762 3.17907 3.28027 3.30660 3.74743 4.02658 4.29480 4.39657 4.65700 4.79541 5.00943 5.07945 5.13179 5.30926 5.44615 5.52039 5.57575 5.86760 5.89815 5.97803 6.12924 6.25881 6.35081 6.42258 6.60449 6.76297 7.09322 7.47226 7.63315 7.79932 8.44980 8.85371 9.41052 10.88788 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.038631 B = 0.007271 C = 0.006728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.638116 B = 3849.825157 C = 4160.987109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.191 3.809 3 H 0.001 0.999 4 C -0.521 4.521 5 H 0.084 0.916 6 C 0.079 3.921 7 N -0.886 5.886 8 Si 0.862 3.138 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.256 1.256 12 N -0.542 5.542 13 C 0.067 3.933 14 C -0.586 4.586 15 S 2.402 3.598 16 O -0.954 6.954 17 O -0.946 6.946 18 C -0.553 4.553 19 H 0.144 0.856 20 C -0.139 4.139 21 C 0.059 3.941 22 H 0.025 0.975 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.265 0.735 26 H 0.044 0.956 27 H 0.123 0.877 28 H 0.130 0.870 29 H 0.140 0.860 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.821 1.234 12.049 12.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.085 3.915 3 H 0.019 0.981 4 C -0.558 4.558 5 H 0.101 0.899 6 C -0.125 4.125 7 N -0.522 5.522 8 Si 0.689 3.311 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.181 1.181 12 N -0.267 5.267 13 C -0.062 4.062 14 C -0.718 4.718 15 S 2.586 3.414 16 O -0.951 6.951 17 O -0.943 6.943 18 C -0.664 4.664 19 H 0.162 0.838 20 C -0.197 4.197 21 C -0.071 4.071 22 H 0.043 0.957 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.141 0.859 28 H 0.149 0.851 29 H 0.158 0.842 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.494 0.838 12.612 12.649 hybrid contribution -0.470 1.483 -1.012 1.856 sum -0.964 2.320 11.600 11.869 Atomic orbital electron populations 1.22231 0.97734 1.00777 0.99187 1.19586 0.92073 0.92354 0.87473 0.98108 1.20858 1.36580 1.10471 0.87930 0.89851 1.24865 0.94601 0.97276 0.95764 1.69968 1.48377 1.35320 0.98556 0.87197 0.78983 0.86535 0.78417 1.20612 1.21151 1.18057 1.61152 1.08061 1.55219 1.02273 1.21761 0.88455 0.94522 1.01452 1.30165 1.10807 1.10829 1.19988 1.08506 0.78979 0.75479 0.78388 1.93546 1.85544 1.53519 1.62512 1.93545 1.73391 1.44474 1.82897 1.29956 1.23626 1.09450 1.03411 0.83788 1.21565 1.03058 1.01190 0.93909 1.21988 1.03910 0.93293 0.87897 0.95658 0.92893 0.92308 0.92484 0.93823 0.85946 0.85143 0.84172 0.91009 0.90131 0.91290 0.88199 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 7.98 37.15 0.30 -2.53 16 2 C 0.19 4.12 1.63 -68.86 -0.11 4.01 16 3 H 0.00 0.03 6.73 -51.93 -0.35 -0.32 16 4 C -0.52 -13.33 7.99 -34.44 -0.28 -13.60 16 5 H 0.08 2.31 7.06 -52.49 -0.37 1.94 16 6 C 0.08 2.10 5.31 -17.82 -0.09 2.01 16 7 N -0.89 -25.44 13.96 55.43 0.77 -24.67 16 8 Si 0.86 19.94 25.77 -169.99 -4.38 15.56 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.26 -5.55 5.57 56.52 0.31 -5.24 16 12 N -0.54 -9.89 4.29 -228.54 -0.98 -10.87 16 13 C 0.07 1.15 5.21 -3.98 -0.02 1.13 16 14 C -0.59 -8.12 6.57 37.25 0.24 -7.87 16 15 S 2.40 34.30 4.74 -107.50 -0.51 33.79 16 16 O -0.95 -15.72 18.11 -57.80 -1.05 -16.77 16 17 O -0.95 -15.94 18.06 -57.80 -1.04 -16.99 16 18 C -0.55 -7.10 3.23 -26.64 -0.09 -7.19 16 19 H 0.14 1.68 8.14 -51.93 -0.42 1.25 16 20 C -0.14 -1.50 9.19 37.15 0.34 -1.15 16 21 C 0.06 0.89 4.54 -3.96 -0.02 0.87 16 22 H 0.02 0.42 6.38 -51.93 -0.33 0.09 16 23 H 0.05 1.11 5.11 -51.93 -0.27 0.84 16 24 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.04 0.72 7.94 -51.93 -0.41 0.31 16 27 H 0.12 2.34 5.96 -51.93 -0.31 2.03 16 28 H 0.13 1.52 8.14 -51.93 -0.42 1.09 16 29 H 0.14 1.81 8.14 -51.92 -0.42 1.39 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.10 1.44 5.58 -51.93 -0.29 1.15 16 34 H 0.05 0.70 7.93 -51.93 -0.41 0.28 16 LS Contribution 274.35 15.07 4.13 4.13 Total: -1.00 -31.49 274.35 -7.70 -39.19 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -4.92 Total: 0.96 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: 0.28 Total: -24.33 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: -0.21 Total: -35.54 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -2.09 Total: -33.75 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.38 Total: 15.56 kcal Atomic # 16 Polarization: 34.30 SS G_CDS: -0.51 Total: 33.79 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.49 -7.70 -39.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247137607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.448 kcal (2) G-P(sol) polarization free energy of solvation -31.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds