Wall clock time and date at job start Mon Mar 30 2020 21:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.50702 * 109.47428 * 277.37481 * 3 2 1 5 5 O 1.21287 * 119.99578 * 0.02562 * 4 3 2 6 6 N 1.34773 * 120.00755 * 180.02562 * 4 3 2 7 7 C 1.46493 * 120.00646 * 179.97438 * 6 4 3 8 8 C 1.50695 * 109.47443 * 270.00265 * 7 6 4 9 9 H 1.08001 * 120.00056 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00480 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99528 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00487 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46798 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47215 * 119.99681 * 12 10 8 15 15 H 1.48502 * 109.47219 * 239.99952 * 12 10 8 16 16 C 1.46505 * 119.99455 * 0.02562 * 6 4 3 17 17 C 1.50703 * 109.47064 * 90.00114 * 16 6 4 18 18 C 1.34515 * 125.79060 * 89.99944 * 17 16 6 19 19 C 1.41380 * 106.83832 * 179.97438 * 18 17 16 20 20 C 1.34506 * 106.84493 * 359.97438 * 19 18 17 21 21 O 1.34306 * 125.78568 * 269.69282 * 17 16 6 22 22 H 4.43227 * 5.59187 * 179.97438 * 4 1 2 23 23 H 1.09004 * 109.47327 * 157.37968 * 3 2 1 24 24 H 1.09002 * 109.47485 * 37.37586 * 3 2 1 25 25 H 1.09006 * 109.46911 * 30.00087 * 7 6 4 26 26 H 1.08996 * 109.47170 * 149.99599 * 7 6 4 27 27 H 0.97003 * 119.99687 * 180.02562 * 11 10 8 28 28 H 1.09002 * 109.47068 * 210.00083 * 16 6 4 29 29 H 1.09001 * 109.47372 * 330.00170 * 16 6 4 30 30 H 1.07996 * 126.58016 * 0.03378 * 18 17 16 31 31 H 1.08006 * 126.57610 * 179.97438 * 19 18 17 32 32 H 1.08005 * 125.79499 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1485 -0.1815 1.4090 5 8 2.3604 -0.3006 2.3232 6 7 4.4735 -0.2120 1.6535 7 6 4.9619 -0.3885 3.0232 8 6 5.1283 0.9600 3.6750 9 1 4.8940 1.8587 3.1238 10 6 5.5795 1.0466 4.9749 11 7 5.8643 -0.0479 5.6463 12 14 5.7864 2.7182 5.7826 13 1 5.4010 3.7830 4.8220 14 1 4.9176 2.7982 6.9843 15 1 7.2044 2.9021 6.1837 16 6 5.4255 -0.0675 0.5492 17 6 5.7505 1.3910 0.3539 18 6 6.7496 2.0617 0.9550 19 6 6.6894 3.3938 0.4853 20 6 5.6576 3.4574 -0.3752 21 8 5.0954 2.2402 -0.4545 22 1 -1.0500 0.0002 0.0001 23 1 3.0089 0.9495 -0.3953 24 1 3.0097 -0.8158 -0.6238 25 1 4.2444 -0.9806 3.5914 26 1 5.9225 -0.9033 3.0030 27 1 6.1815 0.0130 6.5610 28 1 6.3385 -0.6152 0.7827 29 1 4.9855 -0.4673 -0.3644 30 1 7.4617 1.6595 1.6604 31 1 7.3460 4.2048 0.7640 32 1 5.3377 4.3371 -0.9140 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692880708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:10 Heat of formation + Delta-G solvation = 39.417730 kcal Electronic energy + Delta-G solvation = -17755.789887 eV Core-core repulsion = 14878.267543 eV Total energy + Delta-G solvation = -2877.522344 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.13278 -39.08500 -35.29135 -33.54354 -32.66035 -32.52228 -30.03872 -29.22948 -26.98806 -25.25089 -22.88081 -21.31699 -20.36401 -19.05805 -17.70893 -17.15353 -16.64377 -16.29686 -15.47841 -15.23859 -14.90265 -14.31037 -14.05808 -13.28720 -13.07895 -12.71082 -12.46106 -12.40811 -12.23682 -11.97261 -11.49458 -11.22903 -10.91593 -10.63684 -10.23794 -10.20640 -9.95305 -9.67638 -9.40682 -8.96357 -8.43460 -8.13995 -7.77955 -6.03714 -4.06141 2.08080 2.95285 3.06930 3.09713 3.24382 3.29818 3.38122 3.43213 3.52434 4.05264 4.46641 4.61736 5.02001 5.11812 5.29150 5.33413 5.45475 5.51246 5.65695 5.69736 5.79326 6.16104 6.21926 6.43020 6.48445 6.92842 6.97339 7.37652 7.45129 7.56005 7.89039 7.93959 8.22989 8.26792 8.88436 9.03221 9.58328 11.04872 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.015968 B = 0.009698 C = 0.007150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.092422 B = 2886.586618 C = 3915.086605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.037 4.037 4 C 0.512 3.488 5 O -0.525 6.525 6 N -0.595 5.595 7 C 0.244 3.756 8 C -0.516 4.516 9 H 0.060 0.940 10 C 0.061 3.939 11 N -0.896 5.896 12 Si 0.893 3.107 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.195 3.805 17 C -0.032 4.032 18 C -0.168 4.168 19 C -0.213 4.213 20 C -0.053 4.053 21 O -0.182 6.182 22 H 0.217 0.783 23 H 0.114 0.886 24 H 0.109 0.891 25 H 0.046 0.954 26 H 0.035 0.965 27 H 0.262 0.738 28 H 0.110 0.890 29 H 0.083 0.917 30 H 0.151 0.849 31 H 0.142 0.858 32 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.358 2.247 -14.385 14.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.164 4.164 3 C -0.076 4.076 4 C 0.299 3.701 5 O -0.401 6.401 6 N -0.327 5.327 7 C 0.126 3.874 8 C -0.554 4.554 9 H 0.078 0.922 10 C -0.140 4.140 11 N -0.536 5.536 12 Si 0.721 3.279 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.210 1.210 16 C 0.070 3.930 17 C -0.083 4.083 18 C -0.188 4.188 19 C -0.233 4.233 20 C -0.121 4.121 21 O -0.078 6.078 22 H 0.234 0.766 23 H 0.131 0.869 24 H 0.127 0.873 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.128 0.872 29 H 0.101 0.899 30 H 0.168 0.832 31 H 0.159 0.841 32 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -0.236 2.003 -13.854 14.000 hybrid contribution 0.275 1.357 0.759 1.579 sum 0.040 3.360 -13.095 13.519 Atomic orbital electron populations 1.24689 0.95702 1.01237 1.00565 1.22224 0.93642 1.00289 1.00200 1.18827 0.86751 1.04872 0.97197 1.20088 0.82729 0.77553 0.89765 1.90704 1.54589 1.48568 1.46195 1.48343 1.04090 1.70390 1.09924 1.19390 0.95098 0.97662 0.75256 1.21447 1.43523 0.92650 0.97829 0.92207 1.24894 0.95572 0.96600 0.96982 1.69939 1.45577 1.27070 1.11001 0.86512 0.77533 0.84421 0.79462 1.19787 1.21005 1.21004 1.19862 0.95700 0.86489 0.90950 1.22981 0.94970 0.94135 0.96175 1.21618 1.01537 0.93475 1.02219 1.21823 1.01482 0.98283 1.01684 1.23837 0.97016 0.87058 1.04160 1.83935 1.50822 1.18750 1.54330 0.76647 0.86862 0.87336 0.93591 0.94726 0.92866 0.87209 0.89893 0.83171 0.84053 0.78804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.11 19.25 29.55 0.57 -2.54 16 2 C -0.16 -2.78 12.58 -37.12 -0.47 -3.25 16 3 C -0.04 -0.59 4.74 -30.67 -0.15 -0.74 16 4 C 0.51 10.86 7.66 -10.99 -0.08 10.78 16 5 O -0.52 -13.72 15.61 5.55 0.09 -13.64 16 6 N -0.60 -12.23 2.44 -176.43 -0.43 -12.66 16 7 C 0.24 6.18 5.20 -5.20 -0.03 6.16 16 8 C -0.52 -14.31 9.13 -34.44 -0.31 -14.63 16 9 H 0.06 1.72 7.64 -52.49 -0.40 1.31 16 10 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 11 N -0.90 -26.35 13.29 55.43 0.74 -25.61 16 12 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 13 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 C 0.19 3.00 5.78 -5.19 -0.03 2.97 16 17 C -0.03 -0.53 6.85 -35.62 -0.24 -0.77 16 18 C -0.17 -2.93 10.39 -39.70 -0.41 -3.34 16 19 C -0.21 -3.29 10.91 -39.71 -0.43 -3.72 16 20 C -0.05 -0.74 12.09 29.41 0.36 -0.39 16 21 O -0.18 -2.87 9.56 5.68 0.05 -2.81 16 22 H 0.22 2.35 7.80 -54.09 -0.42 1.92 16 23 H 0.11 1.69 6.93 -51.93 -0.36 1.33 16 24 H 0.11 1.32 7.40 -51.93 -0.38 0.94 16 25 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 26 H 0.03 0.86 7.89 -51.93 -0.41 0.45 16 27 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.11 1.51 7.89 -51.93 -0.41 1.10 16 29 H 0.08 0.97 6.44 -51.93 -0.33 0.63 16 30 H 0.15 2.67 8.06 -52.49 -0.42 2.25 16 31 H 0.14 1.88 8.06 -52.48 -0.42 1.45 16 32 H 0.20 1.91 8.06 -52.48 -0.42 1.49 16 LS Contribution 293.70 15.07 4.43 4.43 Total: -1.00 -34.74 293.70 -4.99 -39.73 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -3.51 Total: 1.32 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -1.33 Total: -7.84 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.31 Total: -38.27 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: 0.14 Total: -16.45 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -34.74 -4.99 -39.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692880708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.145 kcal (2) G-P(sol) polarization free energy of solvation -34.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds