Wall clock time and date at job start Mon Mar 30 2020 21:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.50702 * 109.47428 * 277.37481 * 3 2 1 5 5 O 1.21287 * 119.99578 * 0.02562 * 4 3 2 6 6 N 1.34773 * 120.00755 * 180.02562 * 4 3 2 7 7 C 1.46493 * 120.00646 * 179.97438 * 6 4 3 8 8 C 1.50695 * 109.47443 * 270.00265 * 7 6 4 9 9 H 1.08001 * 120.00056 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00480 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99528 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00487 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46798 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47215 * 119.99681 * 12 10 8 15 15 H 1.48502 * 109.47219 * 239.99952 * 12 10 8 16 16 C 1.46505 * 119.99455 * 0.02562 * 6 4 3 17 17 C 1.50703 * 109.47064 * 90.00114 * 16 6 4 18 18 C 1.34515 * 125.79060 * 89.99944 * 17 16 6 19 19 C 1.41380 * 106.83832 * 179.97438 * 18 17 16 20 20 C 1.34506 * 106.84493 * 359.97438 * 19 18 17 21 21 O 1.34306 * 125.78568 * 269.69282 * 17 16 6 22 22 H 4.43227 * 5.59187 * 179.97438 * 4 1 2 23 23 H 1.09004 * 109.47327 * 157.37968 * 3 2 1 24 24 H 1.09002 * 109.47485 * 37.37586 * 3 2 1 25 25 H 1.09006 * 109.46911 * 30.00087 * 7 6 4 26 26 H 1.08996 * 109.47170 * 149.99599 * 7 6 4 27 27 H 0.97003 * 119.99687 * 180.02562 * 11 10 8 28 28 H 1.09002 * 109.47068 * 210.00083 * 16 6 4 29 29 H 1.09001 * 109.47372 * 330.00170 * 16 6 4 30 30 H 1.07996 * 126.58016 * 0.03378 * 18 17 16 31 31 H 1.08006 * 126.57610 * 179.97438 * 19 18 17 32 32 H 1.08005 * 125.79499 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1485 -0.1815 1.4090 5 8 2.3604 -0.3006 2.3232 6 7 4.4735 -0.2120 1.6535 7 6 4.9619 -0.3885 3.0232 8 6 5.1283 0.9600 3.6750 9 1 4.8940 1.8587 3.1238 10 6 5.5795 1.0466 4.9749 11 7 5.8643 -0.0479 5.6463 12 14 5.7864 2.7182 5.7826 13 1 5.4010 3.7830 4.8220 14 1 4.9176 2.7982 6.9843 15 1 7.2044 2.9021 6.1837 16 6 5.4255 -0.0675 0.5492 17 6 5.7505 1.3910 0.3539 18 6 6.7496 2.0617 0.9550 19 6 6.6894 3.3938 0.4853 20 6 5.6576 3.4574 -0.3752 21 8 5.0954 2.2402 -0.4545 22 1 -1.0500 0.0002 0.0001 23 1 3.0089 0.9495 -0.3953 24 1 3.0097 -0.8158 -0.6238 25 1 4.2444 -0.9806 3.5914 26 1 5.9225 -0.9033 3.0030 27 1 6.1815 0.0130 6.5610 28 1 6.3385 -0.6152 0.7827 29 1 4.9855 -0.4673 -0.3644 30 1 7.4617 1.6595 1.6604 31 1 7.3460 4.2048 0.7640 32 1 5.3377 4.3371 -0.9140 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692880708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:10 Heat of formation + Delta-G solvation = 17.023944 kcal Electronic energy + Delta-G solvation = -17756.760955 eV Core-core repulsion = 14878.267543 eV Total energy + Delta-G solvation = -2878.493412 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.33462 -40.73166 -36.96488 -35.01934 -34.55213 -33.75254 -31.48887 -30.66966 -28.73715 -26.64798 -24.86156 -22.54108 -21.66205 -20.54520 -18.96723 -18.78354 -18.29249 -17.86824 -17.09136 -16.60933 -16.44160 -16.12095 -15.31506 -14.69347 -14.55504 -14.31848 -14.09363 -13.70919 -13.60040 -13.47536 -13.26293 -12.92667 -12.72827 -12.54369 -12.25169 -11.72625 -11.55711 -11.14460 -10.69235 -10.62299 -10.61375 -9.69949 -9.24211 -8.21063 -6.30678 0.85602 1.32151 1.34997 1.45846 1.61862 1.72810 1.86231 1.92290 2.25280 2.36551 2.61606 3.10200 3.46881 3.77717 3.92205 4.15773 4.27086 4.38808 4.49343 4.50187 4.61331 4.96017 5.03678 5.11094 5.17366 5.25683 5.33702 5.54781 5.71617 5.81121 6.09257 6.31695 6.57588 6.74670 6.77755 7.26761 7.41914 8.86908 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.015968 B = 0.009698 C = 0.007150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.092422 B = 2886.586618 C = 3915.086605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.216 4.216 3 C -0.021 4.021 4 C 0.503 3.497 5 O -0.588 6.588 6 N -0.596 5.596 7 C 0.259 3.741 8 C -0.518 4.518 9 H 0.048 0.952 10 C 0.011 3.989 11 N -0.927 5.927 12 Si 0.953 3.047 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.269 1.269 16 C 0.189 3.811 17 C -0.044 4.044 18 C -0.194 4.194 19 C -0.237 4.237 20 C -0.038 4.038 21 O -0.183 6.183 22 H 0.251 0.749 23 H 0.127 0.873 24 H 0.151 0.849 25 H 0.001 0.999 26 H 0.034 0.966 27 H 0.265 0.735 28 H 0.122 0.878 29 H 0.130 0.870 30 H 0.135 0.865 31 H 0.158 0.842 32 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.117 3.561 -16.464 16.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.217 4.217 3 C -0.060 4.060 4 C 0.292 3.708 5 O -0.468 6.468 6 N -0.326 5.326 7 C 0.138 3.862 8 C -0.557 4.557 9 H 0.066 0.934 10 C -0.188 4.188 11 N -0.568 5.568 12 Si 0.779 3.221 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.194 1.194 16 C 0.066 3.934 17 C -0.094 4.094 18 C -0.214 4.214 19 C -0.256 4.256 20 C -0.106 4.106 21 O -0.080 6.080 22 H 0.268 0.732 23 H 0.145 0.855 24 H 0.168 0.832 25 H 0.019 0.981 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.140 0.860 29 H 0.148 0.852 30 H 0.153 0.847 31 H 0.176 0.824 32 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -0.441 3.322 -15.984 16.332 hybrid contribution 0.323 0.966 1.364 1.702 sum -0.118 4.287 -14.621 15.237 Atomic orbital electron populations 1.25679 0.96795 0.99534 0.98382 1.22769 0.94732 1.02032 1.02123 1.18783 0.86560 1.07076 0.93544 1.21097 0.82202 0.75917 0.91575 1.90662 1.56127 1.51398 1.48619 1.48275 1.05152 1.69836 1.09368 1.18869 0.93658 0.95908 0.77755 1.21578 1.42986 0.93033 0.98095 0.93414 1.25671 0.95464 0.99964 0.97668 1.70035 1.46420 1.28937 1.11405 0.85574 0.78115 0.80246 0.78175 1.19750 1.21112 1.19377 1.20250 0.95644 0.86592 0.90878 1.22992 0.95086 0.94657 0.96706 1.21757 1.02029 0.95025 1.02568 1.22116 1.02874 0.97964 1.02614 1.24687 0.95633 0.87333 1.02924 1.83938 1.50732 1.19289 1.54022 0.73226 0.85520 0.83177 0.98123 0.94763 0.92613 0.85965 0.85239 0.84718 0.82427 0.74475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.27 19.25 74.32 1.43 -3.84 16 2 C -0.22 -7.00 12.58 31.12 0.39 -6.61 16 3 C -0.02 -0.63 4.74 28.04 0.13 -0.50 16 4 C 0.50 21.31 7.66 87.66 0.67 21.98 16 5 O -0.59 -31.71 15.61 -3.05 -0.05 -31.76 16 6 N -0.60 -24.51 2.44 -830.50 -2.03 -26.54 16 7 C 0.26 13.56 5.20 85.63 0.45 14.01 16 8 C -0.52 -29.44 9.13 25.60 0.23 -29.21 16 9 H 0.05 2.78 7.64 -2.91 -0.02 2.76 16 10 C 0.01 0.63 5.46 84.65 0.46 1.09 16 11 N -0.93 -55.72 13.29 21.45 0.28 -55.44 16 12 Si 0.95 45.79 29.54 68.60 2.03 47.82 16 13 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 14 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 15 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 16 C 0.19 5.52 5.78 85.63 0.50 6.02 16 17 C -0.04 -1.39 6.85 24.83 0.17 -1.22 16 18 C -0.19 -6.63 10.39 22.19 0.23 -6.40 16 19 C -0.24 -6.88 10.91 22.19 0.24 -6.64 16 20 C -0.04 -0.96 12.09 66.97 0.81 -0.15 16 21 O -0.18 -5.28 9.56 -2.58 -0.02 -5.30 16 22 H 0.25 4.64 7.80 -4.42 -0.03 4.61 16 23 H 0.13 3.43 6.93 -2.38 -0.02 3.41 16 24 H 0.15 3.10 7.40 -2.39 -0.02 3.08 16 25 H 0.00 0.04 7.42 -2.38 -0.02 0.02 16 26 H 0.03 1.77 7.89 -2.39 -0.02 1.75 16 27 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 28 H 0.12 3.23 7.89 -2.39 -0.02 3.21 16 29 H 0.13 2.56 6.44 -2.39 -0.02 2.54 16 30 H 0.13 4.92 8.06 -2.91 -0.02 4.90 16 31 H 0.16 3.90 8.06 -2.91 -0.02 3.87 16 32 H 0.24 3.56 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -78.52 293.70 7.05 -71.47 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 1.12 Total: 11.24 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: 5.72 Total: -11.48 kcal Atomic # 7 Polarization: -80.24 SS G_CDS: -1.74 Total: -81.98 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -0.07 Total: -37.07 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -78.52 7.05 -71.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692880708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.492 kcal (2) G-P(sol) polarization free energy of solvation -78.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds