Wall clock time and date at job start Mon Mar 30 2020 21:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99599 * 2 1 4 4 H 1.48495 * 109.47153 * 270.00341 * 3 2 1 5 5 H 1.48499 * 109.47300 * 30.00103 * 3 2 1 6 6 H 1.48498 * 109.47097 * 150.00243 * 3 2 1 7 7 C 1.38808 * 120.00640 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00336 * 166.20863 * 7 2 1 9 9 N 1.36942 * 119.99540 * 346.21046 * 7 2 1 10 10 C 1.46921 * 120.63069 * 330.08137 * 9 7 2 11 11 C 1.53197 * 108.89034 * 233.51646 * 10 9 7 12 12 C 1.53071 * 109.29566 * 305.57721 * 11 10 9 13 13 O 1.42903 * 109.45098 * 181.24292 * 12 11 10 14 14 C 1.35898 * 116.99836 * 85.73756 * 13 12 11 15 15 C 1.38731 * 120.05470 * 174.46367 * 14 13 12 16 16 C 1.38150 * 119.94121 * 179.74155 * 15 14 13 17 17 C 1.38266 * 120.05674 * 0.50511 * 16 15 14 18 18 C 1.38263 * 120.11142 * 359.77144 * 17 16 15 19 19 C 1.38145 * 120.05823 * 359.97410 * 18 17 16 20 20 C 1.53044 * 109.65838 * 61.15762 * 12 11 10 21 21 C 1.46924 * 120.62835 * 150.06233 * 9 7 2 22 22 H 0.96995 * 120.00058 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.59250 * 353.37373 * 10 9 7 24 24 H 1.09001 * 109.58990 * 113.66214 * 10 9 7 25 25 H 1.09000 * 109.50098 * 65.39185 * 11 10 9 26 26 H 1.09001 * 109.49338 * 185.48757 * 11 10 9 27 27 H 1.09003 * 109.33931 * 301.13666 * 12 11 10 28 28 H 1.07992 * 120.03357 * 359.97438 * 15 14 13 29 29 H 1.08005 * 119.97308 * 180.27576 * 16 15 14 30 30 H 1.08003 * 119.94347 * 179.74561 * 17 16 15 31 31 H 1.07997 * 119.97227 * 179.97438 * 18 17 16 32 32 H 1.08000 * 120.03169 * 179.97438 * 19 18 17 33 33 H 1.08997 * 109.49848 * 178.74659 * 20 12 11 34 34 H 1.09000 * 109.52374 * 58.66273 * 20 12 11 35 35 H 1.09000 * 109.58548 * 246.19866 * 21 9 7 36 36 H 1.09001 * 109.59076 * 6.48011 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 3.0670 -1.2154 -0.2235 9 7 1.3553 -2.3710 0.2816 10 6 0.1921 -2.3795 1.1791 11 6 0.4290 -3.4092 2.2884 12 6 0.7503 -4.7667 1.6582 13 8 0.9434 -5.7365 2.6898 14 6 -0.1667 -6.3574 3.1685 15 6 -0.0437 -7.3898 4.0870 16 6 -1.1740 -8.0158 4.5761 17 6 -2.4264 -7.6212 4.1431 18 6 -2.5513 -6.5964 3.2234 19 6 -1.4245 -5.9636 2.7352 20 6 2.0246 -4.6556 0.8179 21 6 1.8022 -3.6406 -0.3077 22 1 -0.4850 0.8400 0.0004 23 1 0.0632 -1.3909 1.6197 24 1 -0.7019 -2.6480 0.6162 25 1 1.2672 -3.0903 2.9079 26 1 -0.4670 -3.4940 2.9033 27 1 -0.0791 -5.0743 1.0212 28 1 0.9344 -7.7014 4.4222 29 1 -1.0791 -8.8166 5.2946 30 1 -3.3086 -8.1146 4.5236 31 1 -3.5306 -6.2902 2.8865 32 1 -1.5225 -5.1634 2.0165 33 1 2.2632 -5.6286 0.3886 34 1 2.8492 -4.3242 1.4489 35 1 1.0400 -4.0143 -0.9914 36 1 2.7344 -3.4835 -0.8503 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000115817708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:12 Heat of formation + Delta-G solvation = 3.578526 kcal Electronic energy + Delta-G solvation = -17872.852059 eV Core-core repulsion = 15129.608705 eV Total energy + Delta-G solvation = -2743.243354 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.08879 -37.85656 -36.23321 -32.76446 -31.02426 -30.22321 -30.04611 -29.13638 -25.22041 -23.04285 -22.56194 -21.99016 -21.21117 -19.25500 -17.99649 -16.94646 -15.95335 -15.55636 -14.82794 -14.73898 -14.42246 -13.91247 -13.60991 -13.36261 -13.25826 -12.90971 -12.55205 -12.30902 -11.58332 -11.54943 -11.50462 -11.17912 -10.97922 -10.75491 -10.55229 -10.35186 -10.17246 -9.93417 -9.74295 -9.54273 -8.91647 -8.52998 -7.98695 -6.72288 -5.83851 -3.29627 1.41892 1.56434 3.35039 3.42278 3.44637 3.52298 3.89295 4.45620 4.93574 4.98448 5.16266 5.22332 5.35983 5.42228 5.45201 5.48637 5.53860 5.65266 5.74824 6.00503 6.07549 6.19212 6.31826 6.42326 6.44912 6.52042 6.56023 6.57471 6.60608 6.69640 6.88920 6.93541 7.28315 7.57323 7.75075 7.75852 8.41107 9.16075 9.77958 10.34903 11.25069 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.043522 B = 0.005047 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.195224 B = 5546.173247 C = 5855.684734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.005 3.995 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.256 4.256 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.174 3.826 11 C -0.163 4.163 12 C 0.092 3.908 13 O -0.317 6.317 14 C 0.143 3.857 15 C -0.163 4.163 16 C -0.085 4.085 17 C -0.170 4.170 18 C -0.080 4.080 19 C -0.210 4.210 20 C -0.127 4.127 21 C 0.148 3.852 22 H 0.255 0.745 23 H 0.093 0.907 24 H 0.020 0.980 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.126 0.874 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.134 0.866 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.020 0.980 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.758 -13.111 6.267 14.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.194 4.194 3 Si 0.734 3.266 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.385 4.385 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.203 4.203 12 C 0.037 3.963 13 O -0.230 6.230 14 C 0.097 3.903 15 C -0.182 4.182 16 C -0.103 4.103 17 C -0.189 4.189 18 C -0.098 4.098 19 C -0.228 4.228 20 C -0.166 4.166 21 C 0.021 3.979 22 H 0.065 0.935 23 H 0.111 0.889 24 H 0.038 0.962 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.144 0.856 29 H 0.141 0.859 30 H 0.136 0.864 31 H 0.140 0.860 32 H 0.152 0.848 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.038 0.962 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.649 -12.955 6.293 14.644 hybrid contribution 0.146 0.967 -0.063 0.980 sum -2.503 -11.988 6.230 13.740 Atomic orbital electron populations 1.69987 1.05319 1.25639 1.53938 1.25117 0.95361 0.98499 1.00435 0.86266 0.79150 0.83415 0.77756 1.21291 1.21515 1.20391 1.19184 0.91675 0.84238 1.43413 0.91611 1.44072 1.34050 1.02590 1.50763 1.20759 0.88539 0.97532 0.88354 1.22816 1.01093 0.95518 1.00830 1.22594 0.99395 0.87163 0.87134 1.86125 1.30316 1.53242 1.53333 1.19121 0.86244 0.91677 0.93301 1.20448 0.99572 0.97666 1.00507 1.20899 0.91951 0.98812 0.98645 1.20983 0.97333 0.99816 1.00744 1.20964 0.98052 0.94989 0.95820 1.21478 0.92175 1.04156 1.05005 1.22180 0.96176 0.99914 0.98325 1.20895 0.98325 0.86543 0.92107 0.93522 0.88903 0.96239 0.91602 0.92681 0.91604 0.85581 0.85855 0.86356 0.86026 0.84845 0.92256 0.91223 0.96203 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.94 11.13 55.49 0.62 -25.33 16 2 C 0.00 0.12 4.98 -17.43 -0.09 0.04 16 3 Si 0.90 21.49 29.58 -169.99 -5.03 16.46 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.26 -6.95 9.58 -15.06 -0.14 -7.10 16 8 H 0.07 1.75 7.87 -52.49 -0.41 1.34 16 9 N -0.59 -14.71 2.99 -172.32 -0.52 -15.23 16 10 C 0.17 4.12 5.27 -3.71 -0.02 4.10 16 11 C -0.16 -3.23 5.36 -26.59 -0.14 -3.37 16 12 C 0.09 1.66 2.07 -26.67 -0.06 1.61 16 13 O -0.32 -5.55 9.80 -19.42 -0.19 -5.74 16 14 C 0.14 2.26 6.61 -39.21 -0.26 2.00 16 15 C -0.16 -2.23 9.99 -39.43 -0.39 -2.62 16 16 C -0.08 -0.98 10.04 -39.60 -0.40 -1.38 16 17 C -0.17 -1.96 10.04 -39.56 -0.40 -2.36 16 18 C -0.08 -1.02 10.04 -39.61 -0.40 -1.42 16 19 C -0.21 -3.14 8.28 -39.43 -0.33 -3.46 16 20 C -0.13 -2.28 5.74 -26.61 -0.15 -2.43 16 21 C 0.15 3.06 6.52 -3.71 -0.02 3.04 16 22 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 23 H 0.09 2.46 6.09 -51.93 -0.32 2.15 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 26 H 0.05 1.01 7.05 -51.93 -0.37 0.65 16 27 H 0.07 1.16 6.24 -51.93 -0.32 0.84 16 28 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 29 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 30 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 31 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 32 H 0.13 2.06 5.48 -52.49 -0.29 1.77 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 1.26 7.93 -51.93 -0.41 0.85 16 LS Contribution 291.24 15.07 4.39 4.39 Total: -1.00 -29.22 291.24 -8.58 -37.81 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -5.06 Total: 0.98 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -2.80 Total: -13.35 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 0.10 Total: -40.56 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.19 Total: -5.74 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.22 -8.58 -37.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115817708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.386 kcal (2) G-P(sol) polarization free energy of solvation -29.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds