Wall clock time and date at job start Mon Mar 30 2020 21:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99599 * 2 1 4 4 H 1.48495 * 109.47153 * 270.00341 * 3 2 1 5 5 H 1.48499 * 109.47300 * 30.00103 * 3 2 1 6 6 H 1.48498 * 109.47097 * 150.00243 * 3 2 1 7 7 C 1.38808 * 120.00640 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00336 * 166.20863 * 7 2 1 9 9 N 1.36942 * 119.99540 * 346.21046 * 7 2 1 10 10 C 1.46921 * 120.63069 * 330.08137 * 9 7 2 11 11 C 1.53197 * 108.89034 * 233.51646 * 10 9 7 12 12 C 1.53071 * 109.29566 * 305.57721 * 11 10 9 13 13 O 1.42903 * 109.45098 * 181.24292 * 12 11 10 14 14 C 1.35898 * 116.99836 * 85.73756 * 13 12 11 15 15 C 1.38731 * 120.05470 * 174.46367 * 14 13 12 16 16 C 1.38150 * 119.94121 * 179.74155 * 15 14 13 17 17 C 1.38266 * 120.05674 * 0.50511 * 16 15 14 18 18 C 1.38263 * 120.11142 * 359.77144 * 17 16 15 19 19 C 1.38145 * 120.05823 * 359.97410 * 18 17 16 20 20 C 1.53044 * 109.65838 * 61.15762 * 12 11 10 21 21 C 1.46924 * 120.62835 * 150.06233 * 9 7 2 22 22 H 0.96995 * 120.00058 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.59250 * 353.37373 * 10 9 7 24 24 H 1.09001 * 109.58990 * 113.66214 * 10 9 7 25 25 H 1.09000 * 109.50098 * 65.39185 * 11 10 9 26 26 H 1.09001 * 109.49338 * 185.48757 * 11 10 9 27 27 H 1.09003 * 109.33931 * 301.13666 * 12 11 10 28 28 H 1.07992 * 120.03357 * 359.97438 * 15 14 13 29 29 H 1.08005 * 119.97308 * 180.27576 * 16 15 14 30 30 H 1.08003 * 119.94347 * 179.74561 * 17 16 15 31 31 H 1.07997 * 119.97227 * 179.97438 * 18 17 16 32 32 H 1.08000 * 120.03169 * 179.97438 * 19 18 17 33 33 H 1.08997 * 109.49848 * 178.74659 * 20 12 11 34 34 H 1.09000 * 109.52374 * 58.66273 * 20 12 11 35 35 H 1.09000 * 109.58548 * 246.19866 * 21 9 7 36 36 H 1.09001 * 109.59076 * 6.48011 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 3.0670 -1.2154 -0.2235 9 7 1.3553 -2.3710 0.2816 10 6 0.1921 -2.3795 1.1791 11 6 0.4290 -3.4092 2.2884 12 6 0.7503 -4.7667 1.6582 13 8 0.9434 -5.7365 2.6898 14 6 -0.1667 -6.3574 3.1685 15 6 -0.0437 -7.3898 4.0870 16 6 -1.1740 -8.0158 4.5761 17 6 -2.4264 -7.6212 4.1431 18 6 -2.5513 -6.5964 3.2234 19 6 -1.4245 -5.9636 2.7352 20 6 2.0246 -4.6556 0.8179 21 6 1.8022 -3.6406 -0.3077 22 1 -0.4850 0.8400 0.0004 23 1 0.0632 -1.3909 1.6197 24 1 -0.7019 -2.6480 0.6162 25 1 1.2672 -3.0903 2.9079 26 1 -0.4670 -3.4940 2.9033 27 1 -0.0791 -5.0743 1.0212 28 1 0.9344 -7.7014 4.4222 29 1 -1.0791 -8.8166 5.2946 30 1 -3.3086 -8.1146 4.5236 31 1 -3.5306 -6.2902 2.8865 32 1 -1.5225 -5.1634 2.0165 33 1 2.2632 -5.6286 0.3886 34 1 2.8492 -4.3242 1.4489 35 1 1.0400 -4.0143 -0.9914 36 1 2.7344 -3.4835 -0.8503 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000115817708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:11 Heat of formation + Delta-G solvation = -12.060568 kcal Electronic energy + Delta-G solvation = -17873.530221 eV Core-core repulsion = 15129.608705 eV Total energy + Delta-G solvation = -2743.921516 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.31620 -39.19742 -37.73343 -34.61458 -32.35278 -31.67024 -31.61927 -30.42499 -27.08157 -24.47321 -24.06778 -23.29808 -22.56548 -20.89347 -19.17983 -18.84644 -17.22667 -16.78415 -16.58027 -16.17433 -15.58886 -15.45660 -15.32800 -14.92117 -14.48762 -14.30909 -14.00773 -13.79815 -13.25838 -13.04669 -12.90661 -12.62743 -12.50170 -12.40151 -12.19699 -12.02197 -11.89710 -11.55537 -11.42122 -11.17886 -10.58304 -9.91494 -9.10468 -8.72878 -7.91314 -5.40038 0.42315 0.53594 1.46334 1.47896 1.57530 2.24408 2.49139 2.88440 3.26473 3.58402 3.78655 3.87333 3.98237 4.02542 4.14286 4.31193 4.38119 4.45166 4.54408 4.56478 4.68638 4.76516 4.88800 4.94516 4.97798 5.05979 5.13188 5.25549 5.39011 5.46160 5.53475 5.60398 5.62771 5.65284 5.93492 6.36635 6.51920 7.10895 7.79415 8.32199 9.15914 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.043522 B = 0.005047 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.195224 B = 5546.173247 C = 5855.684734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.047 4.047 3 Si 0.969 3.031 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.271 1.271 7 C -0.268 4.268 8 H 0.069 0.931 9 N -0.611 5.611 10 C 0.184 3.816 11 C -0.147 4.147 12 C 0.103 3.897 13 O -0.326 6.326 14 C 0.109 3.891 15 C -0.171 4.171 16 C -0.080 4.080 17 C -0.163 4.163 18 C -0.088 4.088 19 C -0.227 4.227 20 C -0.116 4.116 21 C 0.145 3.855 22 H 0.251 0.749 23 H 0.059 0.941 24 H 0.004 0.996 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.136 0.864 29 H 0.159 0.841 30 H 0.151 0.849 31 H 0.140 0.860 32 H 0.119 0.881 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.023 0.977 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.800 -14.971 7.280 16.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.243 4.243 3 Si 0.797 3.203 4 H -0.209 1.209 5 H -0.218 1.218 6 H -0.195 1.195 7 C -0.398 4.398 8 H 0.086 0.914 9 N -0.335 5.335 10 C 0.057 3.943 11 C -0.186 4.186 12 C 0.047 3.953 13 O -0.240 6.240 14 C 0.064 3.936 15 C -0.189 4.189 16 C -0.098 4.098 17 C -0.181 4.181 18 C -0.106 4.106 19 C -0.246 4.246 20 C -0.155 4.155 21 C 0.020 3.980 22 H 0.060 0.940 23 H 0.077 0.923 24 H 0.022 0.978 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.154 0.846 29 H 0.176 0.824 30 H 0.169 0.831 31 H 0.158 0.842 32 H 0.137 0.863 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.041 0.959 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.680 -14.850 7.310 16.767 hybrid contribution 0.080 1.419 -0.331 1.459 sum -2.600 -13.430 6.979 15.357 Atomic orbital electron populations 1.70141 1.06703 1.26012 1.55275 1.25870 0.96121 1.01592 1.00677 0.85255 0.78036 0.79330 0.77696 1.20860 1.21846 1.19543 1.19530 0.92080 0.85451 1.42756 0.91368 1.44325 1.34101 1.03465 1.51590 1.20496 0.87947 0.96854 0.88959 1.22556 1.01009 0.95768 0.99308 1.22309 0.99385 0.86304 0.87304 1.86074 1.31357 1.53222 1.53343 1.19450 0.85973 0.93145 0.95025 1.20740 1.01052 0.97146 0.99996 1.21341 0.91176 0.98881 0.98386 1.21424 0.98636 0.98718 0.99322 1.21273 0.98162 0.95172 0.95969 1.21495 0.92924 1.04585 1.05562 1.22009 0.95858 1.00329 0.97314 1.21031 0.98426 0.85477 0.93107 0.93960 0.92267 0.97830 0.92820 0.91730 0.91365 0.84604 0.82377 0.83112 0.84176 0.86293 0.89388 0.91919 0.95947 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.23 11.13 21.65 0.24 -54.99 16 2 C -0.05 -2.63 4.98 84.86 0.42 -2.21 16 3 Si 0.97 44.78 29.58 68.60 2.03 46.80 16 4 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.27 -14.80 9.58 84.03 0.81 -13.99 16 8 H 0.07 3.65 7.87 -2.91 -0.02 3.62 16 9 N -0.61 -30.97 2.99 -699.11 -2.09 -33.06 16 10 C 0.18 9.00 5.27 86.37 0.45 9.46 16 11 C -0.15 -5.94 5.36 30.68 0.16 -5.78 16 12 C 0.10 3.68 2.07 30.63 0.06 3.75 16 13 O -0.33 -11.21 9.80 -92.40 -0.91 -12.12 16 14 C 0.11 3.36 6.61 22.51 0.15 3.50 16 15 C -0.17 -4.29 9.99 22.37 0.22 -4.07 16 16 C -0.08 -1.57 10.04 22.26 0.22 -1.34 16 17 C -0.16 -3.16 10.04 22.28 0.22 -2.93 16 18 C -0.09 -2.05 10.04 22.25 0.22 -1.83 16 19 C -0.23 -6.65 8.28 22.37 0.19 -6.46 16 20 C -0.12 -4.08 5.74 30.67 0.18 -3.90 16 21 C 0.15 5.98 6.52 86.36 0.56 6.54 16 22 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 23 H 0.06 3.29 6.09 -2.39 -0.01 3.27 16 24 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 25 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.06 2.44 7.05 -2.39 -0.02 2.43 16 27 H 0.07 2.42 6.24 -2.39 -0.01 2.40 16 28 H 0.14 3.05 8.06 -2.91 -0.02 3.02 16 29 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 30 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 31 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 32 H 0.12 3.74 5.48 -2.91 -0.02 3.72 16 33 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 2.72 7.93 -2.39 -0.02 2.70 16 Total: -1.00 -63.59 291.24 4.21 -59.38 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 1.05 Total: 13.24 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: 3.88 Total: -19.27 kcal Atomic # 7 Polarization: -86.19 SS G_CDS: -1.85 Total: -88.04 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -0.91 Total: -12.12 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -63.59 4.21 -59.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115817708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.320 kcal (2) G-P(sol) polarization free energy of solvation -63.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds