Wall clock time and date at job start Mon Mar 30 2020 21:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00099 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00216 * 179.97438 * 7 2 1 10 10 N 1.46897 * 109.47105 * 180.02562 * 9 7 2 11 11 C 1.46900 * 110.99822 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47126 * 179.97438 * 11 10 9 13 13 O 1.42002 * 114.75533 * 326.20066 * 12 11 10 14 14 C 1.42370 * 115.62980 * 194.08838 * 13 12 11 15 15 C 1.53328 * 109.08402 * 53.99971 * 14 13 12 16 16 C 1.53120 * 108.38156 * 288.34623 * 15 14 13 17 17 C 1.52427 * 116.12313 * 179.97438 * 12 11 10 18 18 H 1.09002 * 117.46358 * 0.74020 * 17 12 11 19 19 C 1.52411 * 116.13437 * 111.74718 * 12 11 10 20 20 F 1.39900 * 117.52044 * 214.03274 * 19 12 11 21 21 F 1.39902 * 117.52471 * 359.18487 * 19 12 11 22 22 H 0.97000 * 119.99667 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47039 * 300.00607 * 9 7 2 24 24 H 1.09001 * 109.46881 * 60.00168 * 9 7 2 25 25 H 1.00896 * 111.00026 * 303.95141 * 10 9 7 26 26 H 1.09004 * 109.47417 * 300.00028 * 11 10 9 27 27 H 1.08997 * 109.47265 * 59.99957 * 11 10 9 28 28 H 1.09004 * 109.19835 * 294.26349 * 14 13 12 29 29 H 1.09002 * 109.80240 * 174.09644 * 14 13 12 30 30 H 1.08998 * 109.67862 * 168.62814 * 15 14 13 31 31 H 1.08994 * 109.71164 * 48.09111 * 15 14 13 32 32 H 1.08993 * 109.49857 * 292.47256 * 16 15 14 33 33 H 1.09000 * 109.49410 * 172.37761 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 7 4.0012 -2.5791 0.0001 11 6 5.4697 -2.6182 0.0001 12 6 5.9410 -4.0738 0.0009 13 8 5.1047 -4.9693 0.7187 14 6 5.6678 -6.2462 1.0001 15 6 7.0115 -6.0554 1.7136 16 6 8.0269 -5.5257 0.6972 17 6 7.4498 -4.2907 0.0004 18 1 8.0850 -3.4050 0.0121 19 6 6.6302 -4.5570 -1.2697 20 9 6.4336 -5.8904 -1.6447 21 9 6.7564 -3.6454 -2.3234 22 1 -0.4849 0.8401 -0.0004 23 1 3.8746 -0.6808 -0.8905 24 1 3.8752 -0.6797 0.8895 25 1 3.6260 -3.0951 0.7817 26 1 5.8467 -2.1143 -0.8899 27 1 5.8466 -2.1142 0.8900 28 1 5.8240 -6.7832 0.0644 29 1 4.9924 -6.8150 1.6393 30 1 7.3546 -7.0103 2.1117 31 1 6.8975 -5.3384 2.5265 32 1 8.2358 -6.2969 -0.0442 33 1 8.9492 -5.2555 1.2115 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849330607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:07:37 Heat of formation + Delta-G solvation = -104.879103 kcal Electronic energy + Delta-G solvation = -18640.254669 eV Core-core repulsion = 15338.078709 eV Total energy + Delta-G solvation = -3302.175960 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.112 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.66179 -47.33047 -40.02140 -35.60051 -34.63818 -33.14004 -32.02886 -28.16617 -26.64056 -24.77610 -22.98049 -21.36188 -20.98586 -19.76281 -17.69579 -17.22362 -16.74342 -16.50536 -15.91695 -15.40681 -14.61081 -14.31816 -14.27395 -13.97813 -13.77123 -13.61624 -13.46135 -13.24287 -13.19894 -12.55152 -12.39805 -11.87015 -11.51355 -11.48213 -11.09410 -10.88408 -10.67046 -10.57873 -10.05873 -9.74701 -9.28315 -9.09034 -8.56487 -7.47744 -6.03074 -4.01023 2.82488 3.14673 3.30722 3.37483 3.38920 3.39452 3.78526 4.15880 4.43930 4.48521 4.57238 4.71698 4.85914 5.03324 5.24985 5.29499 5.42064 5.43296 5.50581 5.57989 5.63609 5.70352 5.81767 5.90123 5.96876 6.74325 7.00020 7.06867 7.60021 7.87251 8.36701 8.66690 9.06154 9.58316 11.10261 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.034667 B = 0.005647 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.485231 B = 4956.884691 C = 5177.613466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.877 3.123 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.515 4.515 8 H 0.081 0.919 9 C 0.163 3.837 10 N -0.671 5.671 11 C 0.093 3.907 12 C 0.099 3.901 13 O -0.311 6.311 14 C 0.038 3.962 15 C -0.157 4.157 16 C -0.095 4.095 17 C -0.181 4.181 18 H 0.137 0.863 19 C 0.168 3.832 20 F -0.159 7.159 21 F -0.155 7.155 22 H 0.264 0.736 23 H 0.023 0.977 24 H -0.014 1.014 25 H 0.347 0.653 26 H 0.090 0.910 27 H 0.043 0.957 28 H 0.068 0.932 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.177 -11.085 2.913 21.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.553 4.553 8 H 0.099 0.901 9 C 0.036 3.964 10 N -0.302 5.302 11 C -0.037 4.037 12 C 0.056 3.944 13 O -0.228 6.228 14 C -0.038 4.038 15 C -0.195 4.195 16 C -0.132 4.132 17 C -0.201 4.201 18 H 0.155 0.845 19 C 0.131 3.869 20 F -0.140 7.140 21 F -0.135 7.135 22 H 0.073 0.927 23 H 0.041 0.959 24 H 0.003 0.997 25 H 0.166 0.834 26 H 0.108 0.892 27 H 0.061 0.939 28 H 0.087 0.913 29 H 0.123 0.877 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 17.754 -10.996 2.242 21.003 hybrid contribution 0.944 0.962 0.422 1.412 sum 18.698 -10.034 2.664 21.387 Atomic orbital electron populations 1.69902 1.06150 1.26843 1.51003 1.24901 0.94756 0.98901 0.94765 0.86827 0.80224 0.83868 0.78606 1.20111 1.21206 1.19274 1.21043 0.88798 0.94926 1.50525 0.90139 1.20042 0.96918 0.84647 0.94841 1.60399 1.02541 1.16853 1.50443 1.21591 0.93001 0.87501 1.01618 1.23121 0.88142 0.93310 0.89848 1.87654 1.38588 1.24193 1.72330 1.23021 0.95122 0.85106 1.00543 1.22207 0.95976 1.02630 0.98643 1.21177 0.98847 0.94857 0.98353 1.24698 0.96958 1.02771 0.95684 0.84518 1.21429 1.09861 0.74000 0.81585 1.92914 1.95550 1.32811 1.92694 1.93009 1.96314 1.64797 1.59369 0.92653 0.95886 0.99667 0.83397 0.89213 0.93901 0.91340 0.87703 0.89962 0.90227 0.90340 0.89919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 7 C -0.51 -15.04 9.87 -34.44 -0.34 -15.38 16 8 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 9 C 0.16 4.03 4.51 -4.98 -0.02 4.01 16 10 N -0.67 -14.52 6.38 -115.06 -0.73 -15.25 16 11 C 0.09 1.60 5.80 -3.82 -0.02 1.57 16 12 C 0.10 1.49 3.06 -91.21 -0.28 1.21 16 13 O -0.31 -4.80 9.51 -35.23 -0.34 -5.14 16 14 C 0.04 0.43 6.55 37.33 0.24 0.68 16 15 C -0.16 -1.38 6.10 -26.50 -0.16 -1.54 16 16 C -0.09 -0.84 5.78 -26.62 -0.15 -0.99 16 17 C -0.18 -2.06 5.91 -90.61 -0.54 -2.60 16 18 H 0.14 1.30 8.14 -51.93 -0.42 0.88 16 19 C 0.17 2.49 5.04 -26.78 -0.13 2.35 16 20 F -0.16 -2.38 14.15 2.25 0.03 -2.35 16 21 F -0.15 -2.50 16.34 2.25 0.04 -2.46 16 22 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 23 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 24 H -0.01 -0.35 7.20 -51.93 -0.37 -0.72 16 25 H 0.35 7.46 7.88 -39.29 -0.31 7.15 16 26 H 0.09 1.52 6.95 -51.93 -0.36 1.16 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.80 5.74 -51.93 -0.30 0.50 16 29 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.69 7.55 -51.93 -0.39 0.29 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 274.76 15.07 4.14 4.14 Total: -1.00 -32.08 274.76 -6.51 -38.60 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -4.25 Total: 1.41 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -1.50 Total: -8.77 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: 0.04 Total: -42.49 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -0.34 Total: -5.14 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 0.07 Total: -4.81 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -32.08 -6.51 -38.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849330607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.282 kcal (2) G-P(sol) polarization free energy of solvation -32.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds