Wall clock time and date at job start Mon Mar 30 2020 21:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99926 * 2 1 4 4 H 1.48497 * 109.47077 * 269.99651 * 3 2 1 5 5 H 1.48493 * 109.47302 * 29.99758 * 3 2 1 6 6 H 1.48501 * 109.47098 * 149.99976 * 3 2 1 7 7 C 1.37876 * 120.00064 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99752 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00156 * 179.97438 * 7 2 1 10 10 N 1.46900 * 109.47226 * 175.22840 * 9 7 2 11 11 C 1.46902 * 110.99899 * 75.65149 * 10 9 7 12 12 C 1.50697 * 109.47388 * 190.00053 * 11 10 9 13 13 C 1.38600 * 120.80114 * 269.72553 * 12 11 10 14 14 N 1.32330 * 119.10290 * 179.71886 * 13 12 11 15 15 C 1.31798 * 120.81887 * 0.56222 * 14 13 12 16 16 N 1.31790 * 121.75496 * 359.70728 * 15 14 13 17 17 C 1.32338 * 120.81996 * 0.02562 * 16 15 14 18 18 C 1.46899 * 111.00048 * 199.60463 * 10 9 7 19 19 C 1.53001 * 109.46916 * 74.92097 * 18 10 9 20 20 C 1.52997 * 117.49685 * 243.43451 * 19 18 10 21 21 C 1.52995 * 117.49831 * 174.81181 * 19 18 10 22 22 H 0.97005 * 120.00011 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.47574 * 295.23132 * 9 7 2 24 24 H 1.09005 * 109.47043 * 55.23113 * 9 7 2 25 25 H 1.09003 * 109.46855 * 310.00518 * 11 10 9 26 26 H 1.09008 * 109.46868 * 69.99914 * 11 10 9 27 27 H 1.08005 * 120.44560 * 359.97438 * 13 12 11 28 28 H 1.07999 * 119.11730 * 179.72813 * 15 14 13 29 29 H 1.07995 * 120.45070 * 180.02562 * 17 16 15 30 30 H 1.09004 * 109.46964 * 194.91675 * 18 10 9 31 31 H 1.08992 * 109.47084 * 314.91822 * 18 10 9 32 32 H 1.09000 * 115.54690 * 29.14206 * 19 18 10 33 33 H 1.08997 * 117.50206 * 0.02562 * 20 19 18 34 34 H 1.09008 * 117.49697 * 145.02247 * 20 19 18 35 35 H 1.09001 * 117.49969 * 214.97455 * 21 19 18 36 36 H 1.09005 * 117.50004 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5742 0.1159 11 6 3.8557 -3.2930 -1.1569 12 6 4.1335 -4.7584 -0.9409 13 6 5.4157 -5.2658 -1.0801 14 7 5.6225 -6.5569 -0.8771 15 6 4.6262 -7.3583 -0.5574 16 7 3.3935 -6.9123 -0.4217 17 6 3.1117 -5.6322 -0.6041 18 6 5.3949 -2.6011 0.5794 19 6 5.4413 -2.2806 2.0747 20 6 6.1751 -1.0079 2.5020 21 6 6.7973 -2.3784 2.7764 22 1 -0.4850 0.8401 -0.0004 23 1 3.8745 -0.7567 -0.9300 24 1 3.8752 -0.6074 0.8436 25 1 2.8398 -3.1670 -1.5313 26 1 4.5629 -2.8924 -1.8833 27 1 6.2357 -4.6153 -1.3467 28 1 4.8254 -8.4084 -0.4022 29 1 2.0995 -5.2731 -0.4910 30 1 5.8161 -3.5915 0.4069 31 1 5.9747 -1.8590 0.0306 32 1 4.5577 -2.5680 2.6447 33 1 6.6244 -0.3986 1.7178 34 1 5.7742 -0.4575 3.3533 35 1 6.8059 -2.7297 3.8082 36 1 7.6565 -2.6706 2.1727 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119082201.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:08:24 Heat of formation + Delta-G solvation = 80.244697 kcal Electronic energy + Delta-G solvation = -17763.470154 eV Core-core repulsion = 15055.844046 eV Total energy + Delta-G solvation = -2707.626108 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.138 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.86430 -38.02894 -35.87091 -33.52994 -32.89455 -31.88811 -28.28024 -27.22701 -24.54497 -24.24167 -22.37185 -22.00579 -20.82872 -19.77011 -17.47413 -17.36214 -16.85823 -15.65941 -15.20838 -14.86955 -14.33386 -14.09780 -13.68039 -13.53500 -13.42751 -13.22369 -12.46264 -12.39228 -11.93991 -11.67199 -11.33776 -10.98538 -10.87351 -10.76098 -10.62035 -10.33774 -10.08309 -9.87452 -9.54598 -9.49128 -9.12094 -9.06385 -8.62133 -7.55961 -6.09775 -4.07287 1.05749 1.23304 3.24017 3.32695 3.33847 3.89859 4.04622 4.25345 4.37448 4.38387 4.60253 4.81204 4.97470 5.08148 5.12562 5.16825 5.22679 5.41418 5.58644 5.73735 5.75100 5.78742 5.87112 6.00332 6.10359 6.15259 6.28029 6.30678 6.56520 6.61015 6.77297 6.82433 7.09356 7.55298 7.77396 7.88113 8.20299 8.58529 8.98176 9.51827 11.03230 Molecular weight = 247.14amu Principal moments of inertia in cm(-1) A = 0.019084 B = 0.007402 C = 0.005763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.822813 B = 3781.804995 C = 4857.485198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.871 3.129 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.508 4.508 8 H 0.081 0.919 9 C 0.162 3.838 10 N -0.518 5.518 11 C 0.103 3.897 12 C -0.164 4.164 13 C 0.142 3.858 14 N -0.525 5.525 15 C 0.277 3.723 16 N -0.522 5.522 17 C 0.168 3.832 18 C 0.078 3.922 19 C -0.131 4.131 20 C -0.182 4.182 21 C -0.186 4.186 22 H 0.264 0.736 23 H -0.015 1.015 24 H 0.037 0.963 25 H 0.103 0.897 26 H 0.037 0.963 27 H 0.160 0.840 28 H 0.190 0.810 29 H 0.173 0.827 30 H 0.066 0.934 31 H 0.029 0.971 32 H 0.113 0.887 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.898 -7.269 -0.248 13.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.132 4.132 3 Si 0.698 3.302 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.547 4.547 8 H 0.099 0.901 9 C 0.036 3.964 10 N -0.242 5.242 11 C -0.026 4.026 12 C -0.168 4.168 13 C -0.024 4.024 14 N -0.239 5.239 15 C -0.012 4.012 16 N -0.235 5.235 17 C 0.002 3.998 18 C -0.051 4.051 19 C -0.150 4.150 20 C -0.219 4.219 21 C -0.224 4.224 22 H 0.074 0.926 23 H 0.003 0.997 24 H 0.055 0.945 25 H 0.121 0.879 26 H 0.055 0.945 27 H 0.177 0.823 28 H 0.207 0.793 29 H 0.190 0.810 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.132 0.868 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.625 -8.344 0.246 14.311 hybrid contribution 0.725 2.344 -0.632 2.534 sum 12.349 -6.000 -0.385 13.735 Atomic orbital electron populations 1.69884 1.06100 1.26852 1.50952 1.24875 0.94689 0.98755 0.94859 0.86929 0.80514 0.84257 0.78490 1.20376 1.21161 1.19003 1.21009 0.88644 0.94671 1.50345 0.90134 1.20268 0.97151 0.83682 0.95300 1.61969 1.17004 1.18332 1.26881 1.20902 1.03411 0.86741 0.91517 1.21817 0.95364 0.99202 1.00452 1.23091 0.95775 0.91490 0.92036 1.68364 1.36601 1.05110 1.13786 1.24837 0.83954 1.00307 0.92070 1.68444 1.23071 1.16725 1.15251 1.23271 1.00487 0.87552 0.88496 1.21748 0.90668 0.99612 0.93055 1.22267 0.95499 1.00987 0.96235 1.22993 1.04614 0.90869 1.03464 1.22930 0.96999 1.01191 1.01240 0.92641 0.99700 0.94452 0.87850 0.94480 0.82275 0.79317 0.81024 0.91606 0.95330 0.86845 0.89292 0.89070 0.89172 0.89365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.70 13.96 55.43 0.77 -25.92 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.87 20.76 27.57 -169.99 -4.69 16.08 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.07 6.41 56.52 0.36 -5.71 16 7 C -0.51 -13.61 9.16 -34.44 -0.32 -13.93 16 8 H 0.08 2.33 7.89 -52.49 -0.41 1.92 16 9 C 0.16 3.64 3.67 -4.98 -0.02 3.62 16 10 N -0.52 -9.83 4.35 -237.51 -1.03 -10.87 16 11 C 0.10 1.71 4.99 -4.98 -0.02 1.69 16 12 C -0.16 -2.44 4.96 -104.36 -0.52 -2.96 16 13 C 0.14 1.94 9.20 -17.20 -0.16 1.78 16 14 N -0.53 -7.36 10.44 -14.58 -0.15 -7.51 16 15 C 0.28 3.69 12.29 -92.16 -1.13 2.56 16 16 N -0.52 -7.82 10.44 -14.58 -0.15 -7.97 16 17 C 0.17 2.56 11.01 -17.20 -0.19 2.37 16 18 C 0.08 1.25 5.10 -3.82 -0.02 1.23 16 19 C -0.13 -2.09 5.12 -90.62 -0.46 -2.55 16 20 C -0.18 -2.65 10.08 -26.73 -0.27 -2.92 16 21 C -0.19 -2.42 10.25 -26.73 -0.27 -2.69 16 22 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 23 H -0.01 -0.33 7.67 -51.93 -0.40 -0.73 16 24 H 0.04 0.87 5.90 -51.93 -0.31 0.56 16 25 H 0.10 1.89 7.28 -51.93 -0.38 1.51 16 26 H 0.04 0.57 8.08 -51.92 -0.42 0.15 16 27 H 0.16 1.83 7.70 -52.48 -0.40 1.42 16 28 H 0.19 1.85 8.06 -52.49 -0.42 1.43 16 29 H 0.17 2.55 8.06 -52.49 -0.42 2.12 16 30 H 0.07 0.97 5.06 -51.93 -0.26 0.71 16 31 H 0.03 0.45 7.74 -51.93 -0.40 0.05 16 32 H 0.11 2.01 8.14 -51.93 -0.42 1.59 16 33 H 0.09 1.26 8.03 -51.93 -0.42 0.85 16 34 H 0.09 1.29 8.14 -51.92 -0.42 0.87 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 301.00 15.07 4.54 4.54 Total: -1.00 -29.81 301.00 -9.31 -39.12 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -5.11 Total: 2.48 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -3.48 Total: -9.93 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: -0.56 Total: -52.28 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.69 Total: 16.08 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.81 -9.31 -39.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119082201.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.360 kcal (2) G-P(sol) polarization free energy of solvation -29.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds