Wall clock time and date at job start Mon Mar 30 2020 21:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.58554 * 2 1 4 4 C 1.53195 * 109.58572 * 239.72363 * 2 1 3 5 5 C 1.53346 * 109.15012 * 294.71732 * 4 2 1 6 6 C 1.53051 * 109.60398 * 298.71431 * 5 4 2 7 7 H 1.08996 * 109.49865 * 301.41515 * 6 5 4 8 8 N 1.46907 * 109.49142 * 181.32364 * 6 5 4 9 9 C 1.53182 * 109.31442 * 61.37315 * 6 5 4 10 10 N 1.46923 * 108.77876 * 305.36697 * 9 6 5 11 11 S 1.65603 * 120.62884 * 233.63728 * 10 9 6 12 12 O 1.42100 * 106.40407 * 23.50726 * 11 10 9 13 13 O 1.42096 * 106.40253 * 156.43333 * 11 10 9 14 14 C 1.76202 * 107.21231 * 269.96780 * 11 10 9 15 15 H 1.07998 * 120.00144 * 359.97438 * 14 11 10 16 16 C 1.37878 * 119.99846 * 180.02562 * 14 11 10 17 17 N 1.31519 * 120.00201 * 180.02562 * 16 14 11 18 18 Si 1.86798 * 120.00035 * 0.02562 * 16 14 11 19 19 H 1.48503 * 109.47242 * 90.00175 * 18 16 14 20 20 H 1.48503 * 109.47146 * 209.99775 * 18 16 14 21 21 H 1.48499 * 109.47225 * 329.99803 * 18 16 14 22 22 H 1.09002 * 109.47153 * 299.99350 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99522 * 1 2 3 25 25 H 1.08999 * 109.49677 * 54.79976 * 4 2 1 26 26 H 1.09007 * 109.49774 * 174.89474 * 4 2 1 27 27 H 1.08998 * 109.42275 * 178.67806 * 5 4 2 28 28 H 1.08998 * 109.42567 * 58.74792 * 5 4 2 29 29 H 1.00901 * 111.00395 * 60.16107 * 8 6 5 30 30 H 1.00899 * 110.99391 * 184.11523 * 8 6 5 31 31 H 1.08998 * 109.58955 * 185.57048 * 9 6 5 32 32 H 1.09012 * 109.58709 * 65.15015 * 9 6 5 33 33 H 0.97003 * 120.00155 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7277 -1.2465 5 6 1.6415 -2.2054 -1.1677 6 6 2.2801 -2.8462 0.0668 7 1 3.3640 -2.7474 0.0084 8 7 1.9192 -4.2692 0.1225 9 6 1.7693 -2.1394 1.3261 10 7 2.0225 -0.6981 1.1953 11 16 2.8482 0.1237 2.3722 12 8 3.6354 -0.8403 3.0579 13 8 3.3992 1.2744 1.7467 14 6 1.6578 0.7098 3.5317 15 1 0.6090 0.5002 3.3816 16 6 2.0652 1.4369 4.6300 17 7 1.1768 1.8739 5.4958 18 14 3.8790 1.8013 4.8885 19 1 4.2264 3.0822 4.2225 20 1 4.1602 1.9075 6.3428 21 1 4.6923 0.7039 4.3060 22 1 -0.3633 0.5137 0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.6074 -0.2755 -2.1372 26 1 3.1297 -0.6486 -1.2923 27 1 1.9844 -2.7226 -2.0638 28 1 0.5566 -2.2826 -1.0966 29 1 2.2456 -4.7575 -0.6979 30 1 2.2732 -4.6992 0.9639 31 1 2.2945 -2.5249 2.2000 32 1 0.6987 -2.3139 1.4343 33 1 1.4634 2.3858 6.2683 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307000708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:09:25 Heat of formation + Delta-G solvation = -85.983993 kcal Electronic energy + Delta-G solvation = -17603.210236 eV Core-core repulsion = 14790.268106 eV Total energy + Delta-G solvation = -2812.942131 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.098 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.78256 -35.75624 -34.43941 -34.24818 -33.02066 -31.80382 -29.31252 -26.55605 -26.32268 -23.66698 -21.73799 -19.55563 -18.40328 -17.29207 -16.84635 -15.75459 -15.35432 -15.11528 -14.85927 -14.14143 -13.78628 -13.64131 -13.29760 -13.03237 -12.65000 -12.49621 -11.98239 -11.85257 -11.54537 -11.38011 -11.15195 -10.88537 -10.71914 -10.60109 -10.55457 -10.17781 -10.09992 -9.76541 -9.20442 -9.11216 -8.67950 -8.22470 -6.79432 -5.32389 2.00225 3.06546 3.17101 3.26063 3.95127 4.09357 4.55164 4.61787 4.93243 5.04340 5.24288 5.33440 5.43659 5.54392 5.66344 5.74512 5.77262 5.88014 6.01558 6.11411 6.13108 6.20947 6.27337 6.36787 6.38290 6.69381 6.83014 7.13880 7.41363 7.48508 7.49900 8.24336 8.71827 10.33041 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.034340 B = 0.008972 C = 0.008508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.175168 B = 3120.182667 C = 3290.209328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.146 3.854 3 H 0.102 0.898 4 C -0.126 4.126 5 C -0.108 4.108 6 C 0.077 3.923 7 H 0.038 0.962 8 N -0.845 5.845 9 C 0.130 3.870 10 N -0.995 5.995 11 S 2.675 3.325 12 O -1.009 7.009 13 O -1.009 7.009 14 C -1.014 5.014 15 H 0.122 0.878 16 C 0.153 3.847 17 N -0.823 5.823 18 Si 0.800 3.200 19 H -0.246 1.246 20 H -0.255 1.255 21 H -0.221 1.221 22 H 0.066 0.934 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.339 0.661 30 H 0.343 0.657 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.142 -7.192 -11.064 13.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.040 3.960 3 H 0.119 0.881 4 C -0.165 4.165 5 C -0.146 4.146 6 C -0.036 4.036 7 H 0.056 0.944 8 N -0.376 5.376 9 C 0.004 3.996 10 N -0.830 5.830 11 S 2.779 3.221 12 O -0.999 6.999 13 O -1.000 7.000 14 C -1.148 5.148 15 H 0.140 0.860 16 C -0.067 4.067 17 N -0.452 5.452 18 Si 0.620 3.380 19 H -0.170 1.170 20 H -0.179 1.179 21 H -0.143 1.143 22 H 0.085 0.915 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.151 0.849 30 H 0.156 0.844 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.276 -6.727 -10.874 12.790 hybrid contribution 1.010 0.150 0.566 1.168 sum 1.287 -6.577 -10.308 12.295 Atomic orbital electron populations 1.22193 0.95541 1.02318 1.02278 1.20868 0.94249 0.96706 0.84201 0.88050 1.21951 1.01322 0.95429 0.97825 1.21562 1.01660 0.95019 0.96373 1.21683 0.97252 0.87959 0.96705 0.94434 1.58661 1.68495 1.02796 1.07623 1.21163 1.01460 0.79862 0.97137 1.57698 1.74835 1.16092 1.34394 1.01394 0.74539 0.72888 0.73258 1.93440 1.69909 1.63079 1.73458 1.93387 1.79029 1.50248 1.77304 1.30545 1.11928 1.48793 1.23542 0.86012 1.24438 0.98228 0.90743 0.93252 1.69994 1.34842 1.29651 1.10761 0.87889 0.84987 0.83548 0.81562 1.17009 1.17867 1.14273 0.91516 0.92125 0.92255 0.90859 0.91773 0.92604 0.90703 0.84906 0.84419 0.89215 0.91095 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.02 37.16 0.34 -2.12 16 2 C 0.15 2.47 3.24 -67.60 -0.22 2.25 16 3 H 0.10 1.84 6.92 -51.93 -0.36 1.48 16 4 C -0.13 -1.71 5.58 -26.45 -0.15 -1.86 16 5 C -0.11 -1.36 5.26 -26.53 -0.14 -1.50 16 6 C 0.08 1.08 3.40 -67.59 -0.23 0.85 16 7 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 8 N -0.85 -9.73 9.25 -4.56 -0.04 -9.77 16 9 C 0.13 2.25 5.60 -3.72 -0.02 2.23 16 10 N -0.99 -19.70 3.00 -106.48 -0.32 -20.01 16 11 S 2.68 67.62 4.23 -107.50 -0.45 67.17 16 12 O -1.01 -27.09 14.61 -57.17 -0.84 -27.93 16 13 O -1.01 -26.99 15.42 -57.17 -0.88 -27.87 16 14 C -1.01 -28.55 10.29 30.60 0.31 -28.24 16 15 H 0.12 3.47 8.06 -52.49 -0.42 3.05 16 16 C 0.15 4.43 5.47 -17.82 -0.10 4.33 16 17 N -0.82 -23.96 13.96 55.43 0.77 -23.19 16 18 Si 0.80 20.77 26.54 -169.99 -4.51 16.26 16 19 H -0.25 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.25 -6.06 7.11 56.52 0.40 -5.65 16 21 H -0.22 -5.83 5.61 56.52 0.32 -5.51 16 22 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 23 H 0.06 0.85 5.72 -51.93 -0.30 0.55 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.94 6.50 -51.93 -0.34 0.61 16 29 H 0.34 3.16 9.04 -39.29 -0.36 2.80 16 30 H 0.34 3.68 8.99 -39.29 -0.35 3.33 16 31 H 0.09 1.65 6.92 -51.93 -0.36 1.29 16 32 H 0.07 1.17 7.49 -51.92 -0.39 0.78 16 33 H 0.28 7.39 8.31 -40.82 -0.34 7.06 16 LS Contribution 271.48 15.07 4.09 4.09 Total: -1.00 -32.17 271.48 -7.01 -39.18 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -4.63 Total: 6.12 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: -0.20 Total: -24.04 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: 0.41 Total: -52.98 kcal Atomic # 8 Polarization: -54.08 SS G_CDS: -1.72 Total: -55.80 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.51 Total: 16.26 kcal Atomic # 16 Polarization: 67.62 SS G_CDS: -0.45 Total: 67.17 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -32.17 -7.01 -39.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307000708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.804 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds