Wall clock time and date at job start Mon Mar 30 2020 21:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.58554 * 2 1 4 4 C 1.53195 * 109.58572 * 239.72363 * 2 1 3 5 5 C 1.53346 * 109.15012 * 294.71732 * 4 2 1 6 6 C 1.53051 * 109.60398 * 298.71431 * 5 4 2 7 7 H 1.08996 * 109.49865 * 301.41515 * 6 5 4 8 8 N 1.46907 * 109.49142 * 181.32364 * 6 5 4 9 9 C 1.53182 * 109.31442 * 61.37315 * 6 5 4 10 10 N 1.46923 * 108.77876 * 305.36697 * 9 6 5 11 11 S 1.65603 * 120.62884 * 233.63728 * 10 9 6 12 12 O 1.42100 * 106.40407 * 23.50726 * 11 10 9 13 13 O 1.42096 * 106.40253 * 156.43333 * 11 10 9 14 14 C 1.76202 * 107.21231 * 269.96780 * 11 10 9 15 15 H 1.07998 * 120.00144 * 359.97438 * 14 11 10 16 16 C 1.37878 * 119.99846 * 180.02562 * 14 11 10 17 17 N 1.31519 * 120.00201 * 180.02562 * 16 14 11 18 18 Si 1.86798 * 120.00035 * 0.02562 * 16 14 11 19 19 H 1.48503 * 109.47242 * 90.00175 * 18 16 14 20 20 H 1.48503 * 109.47146 * 209.99775 * 18 16 14 21 21 H 1.48499 * 109.47225 * 329.99803 * 18 16 14 22 22 H 1.09002 * 109.47153 * 299.99350 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99522 * 1 2 3 25 25 H 1.08999 * 109.49677 * 54.79976 * 4 2 1 26 26 H 1.09007 * 109.49774 * 174.89474 * 4 2 1 27 27 H 1.08998 * 109.42275 * 178.67806 * 5 4 2 28 28 H 1.08998 * 109.42567 * 58.74792 * 5 4 2 29 29 H 1.00901 * 111.00395 * 60.16107 * 8 6 5 30 30 H 1.00899 * 110.99391 * 184.11523 * 8 6 5 31 31 H 1.08998 * 109.58955 * 185.57048 * 9 6 5 32 32 H 1.09012 * 109.58709 * 65.15015 * 9 6 5 33 33 H 0.97003 * 120.00155 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7277 -1.2465 5 6 1.6415 -2.2054 -1.1677 6 6 2.2801 -2.8462 0.0668 7 1 3.3640 -2.7474 0.0084 8 7 1.9192 -4.2692 0.1225 9 6 1.7693 -2.1394 1.3261 10 7 2.0225 -0.6981 1.1953 11 16 2.8482 0.1237 2.3722 12 8 3.6354 -0.8403 3.0579 13 8 3.3992 1.2744 1.7467 14 6 1.6578 0.7098 3.5317 15 1 0.6090 0.5002 3.3816 16 6 2.0652 1.4369 4.6300 17 7 1.1768 1.8739 5.4958 18 14 3.8790 1.8013 4.8885 19 1 4.2264 3.0822 4.2225 20 1 4.1602 1.9075 6.3428 21 1 4.6923 0.7039 4.3060 22 1 -0.3633 0.5137 0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.6074 -0.2755 -2.1372 26 1 3.1297 -0.6486 -1.2923 27 1 1.9844 -2.7226 -2.0638 28 1 0.5566 -2.2826 -1.0966 29 1 2.2456 -4.7575 -0.6979 30 1 2.2732 -4.6992 0.9639 31 1 2.2945 -2.5249 2.2000 32 1 0.6987 -2.3139 1.4343 33 1 1.4634 2.3858 6.2683 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307000708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:09:24 Heat of formation + Delta-G solvation = -112.933160 kcal Electronic energy + Delta-G solvation = -17604.378840 eV Core-core repulsion = 14790.268106 eV Total energy + Delta-G solvation = -2814.110734 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.098 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.03780 -37.81267 -36.53363 -35.41565 -35.20818 -33.14428 -30.40814 -28.57741 -27.76985 -24.87469 -22.97809 -21.16311 -20.24442 -19.02371 -18.72169 -17.33680 -17.01855 -16.29877 -16.17758 -15.72729 -15.52009 -15.27756 -15.06400 -14.65970 -14.23156 -13.65926 -13.55290 -13.35664 -13.14304 -13.00955 -12.87304 -12.72185 -12.57897 -12.29454 -11.89040 -11.68525 -11.53817 -11.36934 -11.27219 -11.16577 -9.82219 -9.59236 -8.99207 -7.54518 0.06877 1.00807 1.10213 1.17179 1.85543 2.36746 2.39570 3.33873 3.50199 3.72930 3.93945 4.09191 4.09445 4.19355 4.34052 4.36885 4.49660 4.71125 4.77193 4.93343 4.95019 5.02712 5.12635 5.15636 5.28695 5.33872 5.45605 5.59508 5.87016 6.00104 6.24048 6.51009 6.65174 8.18806 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.034340 B = 0.008972 C = 0.008508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.175168 B = 3120.182667 C = 3290.209328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.131 3.869 3 H 0.082 0.918 4 C -0.121 4.121 5 C -0.103 4.103 6 C 0.082 3.918 7 H 0.028 0.972 8 N -0.841 5.841 9 C 0.122 3.878 10 N -0.991 5.991 11 S 2.693 3.307 12 O -1.028 7.028 13 O -1.027 7.027 14 C -1.037 5.037 15 H 0.103 0.897 16 C 0.107 3.893 17 N -0.853 5.853 18 Si 0.823 3.177 19 H -0.238 1.238 20 H -0.217 1.217 21 H -0.231 1.231 22 H 0.037 0.963 23 H 0.072 0.928 24 H 0.091 0.909 25 H 0.106 0.894 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.355 0.645 30 H 0.347 0.653 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.308 -8.135 -12.930 15.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.026 3.974 3 H 0.101 0.899 4 C -0.160 4.160 5 C -0.141 4.141 6 C -0.031 4.031 7 H 0.046 0.954 8 N -0.374 5.374 9 C -0.004 4.004 10 N -0.830 5.830 11 S 2.796 3.204 12 O -1.018 7.018 13 O -1.017 7.017 14 C -1.169 5.169 15 H 0.122 0.878 16 C -0.109 4.109 17 N -0.484 5.484 18 Si 0.640 3.360 19 H -0.161 1.161 20 H -0.139 1.139 21 H -0.153 1.153 22 H 0.057 0.943 23 H 0.091 0.909 24 H 0.110 0.890 25 H 0.125 0.875 26 H 0.076 0.924 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.170 0.830 30 H 0.160 0.840 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.430 -7.664 -12.716 14.853 hybrid contribution 0.867 0.390 1.090 1.446 sum 1.297 -7.275 -11.626 13.776 Atomic orbital electron populations 1.22165 0.93964 1.03175 1.02509 1.21244 0.95623 0.96127 0.84432 0.89940 1.21961 1.01074 0.96048 0.96920 1.21561 1.01846 0.94189 0.96512 1.21549 0.96713 0.89215 0.95613 0.95354 1.58609 1.68447 1.01554 1.08746 1.21384 1.01906 0.78461 0.98603 1.57362 1.74644 1.17091 1.33888 1.00629 0.74083 0.72515 0.73207 1.93403 1.70445 1.63255 1.74708 1.93351 1.79388 1.51548 1.77417 1.31080 1.12157 1.48918 1.24772 0.87835 1.25187 1.01452 0.90879 0.93394 1.70018 1.36364 1.30441 1.11541 0.87519 0.81174 0.83326 0.83965 1.16135 1.13905 1.15323 0.94329 0.90912 0.88992 0.87522 0.92414 0.89769 0.90151 0.83034 0.83975 0.90971 0.90342 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.49 9.02 71.98 0.65 -3.85 16 2 C 0.13 4.28 3.24 44.98 0.15 4.42 16 3 H 0.08 2.99 6.92 -2.39 -0.02 2.97 16 4 C -0.12 -2.91 5.58 30.78 0.17 -2.74 16 5 C -0.10 -2.21 5.26 30.73 0.16 -2.05 16 6 C 0.08 2.13 3.40 44.99 0.15 2.29 16 7 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 8 N -0.84 -17.11 9.25 -168.34 -1.56 -18.67 16 9 C 0.12 4.14 5.60 86.36 0.48 4.62 16 10 N -0.99 -39.09 3.00 -490.79 -1.47 -40.56 16 11 S 2.69 138.08 4.23 -56.49 -0.24 137.84 16 12 O -1.03 -55.89 14.61 -128.00 -1.87 -57.76 16 13 O -1.03 -55.44 15.42 -128.00 -1.97 -57.41 16 14 C -1.04 -60.09 10.29 67.73 0.70 -59.40 16 15 H 0.10 6.18 8.06 -2.91 -0.02 6.15 16 16 C 0.11 6.32 5.47 84.65 0.46 6.79 16 17 N -0.85 -50.38 13.96 21.45 0.30 -50.08 16 18 Si 0.82 41.93 26.54 68.60 1.82 43.75 16 19 H -0.24 -11.72 7.11 99.48 0.71 -11.01 16 20 H -0.22 -9.68 7.11 99.48 0.71 -8.98 16 21 H -0.23 -12.09 5.61 99.48 0.56 -11.54 16 22 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.07 1.86 5.72 -2.39 -0.01 1.84 16 24 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 25 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 27 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.08 1.68 6.50 -2.39 -0.02 1.67 16 29 H 0.36 5.41 9.04 -89.69 -0.81 4.60 16 30 H 0.35 6.76 8.99 -89.69 -0.81 5.96 16 31 H 0.07 2.67 6.92 -2.39 -0.02 2.65 16 32 H 0.08 2.51 7.49 -2.38 -0.02 2.49 16 33 H 0.29 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -69.89 271.48 -2.70 -72.60 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -0.64 Total: 20.20 kcal Atomic # 6 Polarization: -52.83 SS G_CDS: 2.93 Total: -49.91 kcal Atomic # 7 Polarization: -106.58 SS G_CDS: -2.73 Total: -109.31 kcal Atomic # 8 Polarization: -111.33 SS G_CDS: -3.84 Total: -115.17 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 1.82 Total: 43.75 kcal Atomic # 16 Polarization: 138.08 SS G_CDS: -0.24 Total: 137.84 kcal Total: -69.89 -2.70 -72.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307000708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.337 kcal (2) G-P(sol) polarization free energy of solvation -69.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds