Wall clock time and date at job start Mon Mar 30 2020 21:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30503 * 125.64868 * 2 1 4 4 C 1.34121 * 109.25739 * 180.02562 * 3 2 1 5 5 C 1.34676 * 108.02255 * 359.97438 * 4 3 2 6 6 C 1.50690 * 126.59366 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47549 * 85.02312 * 6 5 4 8 8 H 1.08997 * 110.49857 * 56.27932 * 7 6 5 9 9 C 1.51564 * 110.56087 * 293.54859 * 7 6 5 10 10 O 1.21290 * 127.14458 * 61.38098 * 9 7 6 11 11 N 1.34781 * 105.71191 * 241.41980 * 9 7 6 12 12 N 1.39167 * 111.43711 * 359.97438 * 11 9 7 13 13 C 1.31439 * 112.35201 * 0.02562 * 12 11 9 14 14 C 1.39103 * 126.64941 * 180.02562 * 13 12 11 15 15 H 1.07996 * 119.99887 * 174.12371 * 14 13 12 16 16 C 1.40589 * 119.99921 * 354.12896 * 14 13 12 17 17 N 1.30557 * 120.00065 * 5.99635 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 186.00541 * 16 14 13 19 19 H 1.48501 * 109.47506 * 94.98119 * 18 16 14 20 20 H 1.48507 * 109.46835 * 214.97844 * 18 16 14 21 21 H 1.48496 * 109.47176 * 334.98002 * 18 16 14 22 22 N 1.35043 * 125.65215 * 180.02562 * 2 1 3 23 23 H 0.96996 * 126.39305 * 0.02562 * 22 2 1 24 24 H 1.09002 * 109.47272 * 89.97515 * 1 2 3 25 25 H 1.09005 * 109.47266 * 209.97504 * 1 2 3 26 26 H 1.08999 * 109.47365 * 329.96986 * 1 2 3 27 27 H 1.08003 * 125.99290 * 179.73546 * 4 3 2 28 28 H 1.09004 * 109.47232 * 205.02722 * 6 5 4 29 29 H 1.09005 * 109.47149 * 325.02239 * 6 5 4 30 30 H 0.97006 * 124.27738 * 179.97438 * 11 9 7 31 31 H 0.96994 * 119.99881 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0605 0.0000 4 6 3.5543 0.6820 -0.0006 5 6 3.5926 -0.6642 -0.0004 6 6 4.8275 -1.5277 -0.0014 7 6 5.3186 -1.7172 1.4352 8 1 4.5281 -2.1381 2.0565 9 6 5.8036 -0.4013 2.0099 10 8 5.1532 0.6087 2.1777 11 7 7.1078 -0.5861 2.2952 12 7 7.5220 -1.8744 1.9702 13 6 6.5491 -2.5997 1.4651 14 6 6.6332 -3.9218 1.0411 15 1 5.7421 -4.4467 0.7298 16 6 7.8780 -4.5748 1.0178 17 7 8.9353 -3.9820 1.5029 18 14 8.0193 -6.2903 0.2923 19 1 8.4417 -6.1940 -1.1281 20 1 9.0266 -7.0694 1.0565 21 1 6.7022 -6.9715 0.3719 22 7 2.2941 -1.0973 -0.0005 23 1 1.9951 -2.0200 -0.0013 24 1 -0.3634 0.0004 -1.0277 25 1 -0.3634 -0.8902 0.5135 26 1 -0.3634 0.8897 0.5143 27 1 4.4098 1.3412 -0.0047 28 1 4.5913 -2.4992 -0.4357 29 1 5.6073 -1.0460 -0.5913 30 1 7.6848 0.0930 2.6785 31 1 9.7940 -4.4326 1.4872 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259850868.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:07:46 Heat of formation + Delta-G solvation = 53.541809 kcal Electronic energy + Delta-G solvation = -17655.017621 eV Core-core repulsion = 14744.974583 eV Total energy + Delta-G solvation = -2910.043038 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.69875 -39.44482 -35.93433 -33.62772 -33.29286 -32.04182 -30.80973 -29.18920 -26.40412 -25.97172 -23.78195 -20.80492 -20.27163 -20.18797 -19.36718 -17.00033 -16.49196 -16.30906 -15.07301 -14.95421 -14.81785 -13.84071 -13.72873 -13.37152 -13.26189 -12.99823 -12.61177 -12.45237 -12.12265 -11.80836 -11.62097 -11.33704 -11.19101 -10.89898 -10.52703 -10.37221 -9.59089 -9.55734 -9.37656 -9.26172 -8.02452 -7.70722 -7.57050 -6.74476 -4.74419 2.39838 2.85879 3.01894 3.04264 3.24876 3.42980 3.60313 3.83338 4.06327 4.44945 4.73922 5.05497 5.17340 5.25964 5.35648 5.52191 5.67899 5.78778 5.81050 5.96084 6.02295 6.16107 6.27398 6.48265 6.76488 6.92203 7.22279 7.24329 7.75326 7.87061 8.08191 8.47959 8.49683 8.70821 9.27449 9.89015 10.16557 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.028864 B = 0.006434 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.820715 B = 4351.136235 C = 5149.860850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.187 3.813 3 N -0.493 5.493 4 C 0.013 3.987 5 C -0.019 4.019 6 C -0.006 4.006 7 C -0.126 4.126 8 H 0.098 0.902 9 C 0.474 3.526 10 O -0.553 6.553 11 N -0.574 5.574 12 N -0.351 5.351 13 C 0.199 3.801 14 C -0.421 4.421 15 H 0.089 0.911 16 C 0.071 3.929 17 N -0.733 5.733 18 Si 0.914 3.086 19 H -0.269 1.269 20 H -0.276 1.276 21 H -0.261 1.261 22 N -0.565 5.565 23 H 0.413 0.587 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.164 0.836 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.409 0.591 31 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.939 -1.764 -4.220 10.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.076 4.076 3 N -0.214 5.214 4 C -0.134 4.134 5 C -0.134 4.134 6 C -0.045 4.045 7 C -0.151 4.151 8 H 0.116 0.884 9 C 0.258 3.742 10 O -0.432 6.432 11 N -0.312 5.312 12 N -0.176 5.176 13 C 0.036 3.964 14 C -0.461 4.461 15 H 0.107 0.893 16 C -0.154 4.154 17 N -0.358 5.358 18 Si 0.738 3.262 19 H -0.194 1.194 20 H -0.201 1.201 21 H -0.185 1.185 22 N -0.170 5.170 23 H 0.251 0.749 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.105 0.895 27 H 0.181 0.819 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.249 0.751 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.422 -0.263 -3.798 9.242 hybrid contribution -0.118 -1.699 -0.143 1.709 sum -8.540 -1.961 -3.941 9.607 Atomic orbital electron populations 1.20083 0.85415 1.03607 1.02936 1.23085 0.95234 0.82091 1.07211 1.70162 1.02506 1.28637 1.20073 1.21938 0.94038 0.92137 1.05329 1.21288 0.85102 0.95968 1.11016 1.19607 0.91404 0.98410 0.95118 1.21449 1.00139 0.96288 0.97185 0.88430 1.21402 0.84022 0.89224 0.79512 1.90670 1.62437 1.32674 1.57389 1.47882 1.09006 1.14491 1.59803 1.77450 1.20147 0.88060 1.31949 1.21295 0.87181 0.94002 0.93930 1.18400 0.94770 0.93796 1.39128 0.89330 1.26013 0.95293 0.99818 0.94313 1.69814 1.00118 1.36796 1.29042 0.86204 0.79283 0.81192 0.79554 1.19408 1.20123 1.18499 1.43024 1.06414 1.09551 1.57967 0.74947 0.90674 0.91230 0.89530 0.81894 0.89853 0.89668 0.75065 0.90873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.64 10.51 36.00 0.38 -0.26 16 2 C 0.19 2.91 8.15 -155.41 -1.27 1.64 16 3 N -0.49 -9.53 11.25 -10.82 -0.12 -9.65 16 4 C 0.01 0.26 9.74 -17.81 -0.17 0.09 16 5 C -0.02 -0.35 6.13 -81.60 -0.50 -0.85 16 6 C -0.01 -0.10 5.27 -27.89 -0.15 -0.25 16 7 C -0.13 -2.69 3.00 -92.13 -0.28 -2.96 16 8 H 0.10 2.03 8.14 -51.93 -0.42 1.61 16 9 C 0.47 10.99 7.98 -10.56 -0.08 10.90 16 10 O -0.55 -13.63 15.13 5.55 0.08 -13.54 16 11 N -0.57 -13.38 7.10 31.45 0.22 -13.16 16 12 N -0.35 -9.03 10.62 33.80 0.36 -8.68 16 13 C 0.20 4.80 6.36 -82.07 -0.52 4.28 16 14 C -0.42 -9.80 9.30 -38.37 -0.36 -10.16 16 15 H 0.09 1.85 7.86 -52.49 -0.41 1.44 16 16 C 0.07 1.64 5.50 -17.21 -0.09 1.55 16 17 N -0.73 -18.20 11.97 55.58 0.67 -17.54 16 18 Si 0.91 16.88 29.57 -169.99 -5.03 11.85 16 19 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 20 H -0.28 -5.10 7.11 56.52 0.40 -4.70 16 21 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 22 N -0.56 -8.42 6.15 -6.54 -0.04 -8.46 16 23 H 0.41 4.66 8.96 -40.82 -0.37 4.29 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.16 3.38 7.50 -52.48 -0.39 2.98 16 28 H 0.08 1.35 8.13 -51.93 -0.42 0.92 16 29 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 30 H 0.41 8.58 8.96 -183.29 -1.64 6.94 16 31 H 0.28 6.32 8.29 -40.82 -0.34 5.98 16 LS Contribution 275.48 15.07 4.15 4.15 Total: -1.00 -31.15 275.48 -7.24 -38.38 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -4.49 Total: 12.66 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -3.04 Total: 3.98 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: 1.09 Total: -57.48 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.08 Total: -13.54 kcal Atomic # 14 Polarization: 16.88 SS G_CDS: -5.03 Total: 11.85 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.15 -7.24 -38.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259850868.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.922 kcal (2) G-P(sol) polarization free energy of solvation -31.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds