Wall clock time and date at job start Mon Mar 30 2020 21:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30503 * 125.64868 * 2 1 4 4 C 1.34121 * 109.25739 * 180.02562 * 3 2 1 5 5 C 1.34676 * 108.02255 * 359.97438 * 4 3 2 6 6 C 1.50690 * 126.59366 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47549 * 85.02312 * 6 5 4 8 8 H 1.08997 * 110.49857 * 56.27932 * 7 6 5 9 9 C 1.51564 * 110.56087 * 293.54859 * 7 6 5 10 10 O 1.21290 * 127.14458 * 61.38098 * 9 7 6 11 11 N 1.34781 * 105.71191 * 241.41980 * 9 7 6 12 12 N 1.39167 * 111.43711 * 359.97438 * 11 9 7 13 13 C 1.31439 * 112.35201 * 0.02562 * 12 11 9 14 14 C 1.39103 * 126.64941 * 180.02562 * 13 12 11 15 15 H 1.07996 * 119.99887 * 174.12371 * 14 13 12 16 16 C 1.40589 * 119.99921 * 354.12896 * 14 13 12 17 17 N 1.30557 * 120.00065 * 5.99635 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 186.00541 * 16 14 13 19 19 H 1.48501 * 109.47506 * 94.98119 * 18 16 14 20 20 H 1.48507 * 109.46835 * 214.97844 * 18 16 14 21 21 H 1.48496 * 109.47176 * 334.98002 * 18 16 14 22 22 N 1.35043 * 125.65215 * 180.02562 * 2 1 3 23 23 H 0.96996 * 126.39305 * 0.02562 * 22 2 1 24 24 H 1.09002 * 109.47272 * 89.97515 * 1 2 3 25 25 H 1.09005 * 109.47266 * 209.97504 * 1 2 3 26 26 H 1.08999 * 109.47365 * 329.96986 * 1 2 3 27 27 H 1.08003 * 125.99290 * 179.73546 * 4 3 2 28 28 H 1.09004 * 109.47232 * 205.02722 * 6 5 4 29 29 H 1.09005 * 109.47149 * 325.02239 * 6 5 4 30 30 H 0.97006 * 124.27738 * 179.97438 * 11 9 7 31 31 H 0.96994 * 119.99881 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0605 0.0000 4 6 3.5543 0.6820 -0.0006 5 6 3.5926 -0.6642 -0.0004 6 6 4.8275 -1.5277 -0.0014 7 6 5.3186 -1.7172 1.4352 8 1 4.5281 -2.1381 2.0565 9 6 5.8036 -0.4013 2.0099 10 8 5.1532 0.6087 2.1777 11 7 7.1078 -0.5861 2.2952 12 7 7.5220 -1.8744 1.9702 13 6 6.5491 -2.5997 1.4651 14 6 6.6332 -3.9218 1.0411 15 1 5.7421 -4.4467 0.7298 16 6 7.8780 -4.5748 1.0178 17 7 8.9353 -3.9820 1.5029 18 14 8.0193 -6.2903 0.2923 19 1 8.4417 -6.1940 -1.1281 20 1 9.0266 -7.0694 1.0565 21 1 6.7022 -6.9715 0.3719 22 7 2.2941 -1.0973 -0.0005 23 1 1.9951 -2.0200 -0.0013 24 1 -0.3634 0.0004 -1.0277 25 1 -0.3634 -0.8902 0.5135 26 1 -0.3634 0.8897 0.5143 27 1 4.4098 1.3412 -0.0047 28 1 4.5913 -2.4992 -0.4357 29 1 5.6073 -1.0460 -0.5913 30 1 7.6848 0.0930 2.6785 31 1 9.7940 -4.4326 1.4872 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259850868.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:07:45 Heat of formation + Delta-G solvation = 30.851812 kcal Electronic energy + Delta-G solvation = -17656.001533 eV Core-core repulsion = 14744.974583 eV Total energy + Delta-G solvation = -2911.026950 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.03043 -41.23327 -37.79546 -35.40963 -34.80225 -33.35322 -32.18406 -30.75846 -27.88942 -27.74388 -25.28990 -22.30195 -21.96480 -21.52161 -21.04811 -18.53728 -18.21911 -17.96220 -16.66237 -16.56653 -16.24587 -15.40753 -15.38528 -14.88477 -14.75927 -14.34598 -13.92172 -13.55856 -13.30334 -13.22293 -13.10257 -12.86986 -12.74821 -12.63632 -12.26530 -11.86267 -11.13454 -11.07481 -10.92655 -10.88274 -9.85760 -9.43553 -9.08460 -8.48422 -6.60724 1.04978 1.29013 1.52804 1.62648 1.66656 2.18521 2.23187 2.28515 2.30432 2.68245 3.31966 3.52285 3.64182 3.81194 4.20913 4.22829 4.36740 4.39506 4.53789 4.59629 4.80409 4.92518 4.99788 5.13260 5.18761 5.36343 5.44465 5.81782 6.08985 6.30959 6.64463 6.70739 6.88694 7.17876 7.46277 8.06909 8.44547 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.028864 B = 0.006434 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.820715 B = 4351.136235 C = 5149.860850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.202 3.798 3 N -0.536 5.536 4 C -0.015 4.015 5 C -0.022 4.022 6 C 0.006 3.994 7 C -0.115 4.115 8 H 0.105 0.895 9 C 0.467 3.533 10 O -0.573 6.573 11 N -0.574 5.574 12 N -0.393 5.393 13 C 0.183 3.817 14 C -0.433 4.433 15 H 0.114 0.886 16 C 0.028 3.972 17 N -0.775 5.775 18 Si 0.993 3.007 19 H -0.266 1.266 20 H -0.278 1.278 21 H -0.244 1.244 22 N -0.552 5.552 23 H 0.433 0.567 24 H 0.098 0.902 25 H 0.100 0.900 26 H 0.087 0.913 27 H 0.140 0.860 28 H 0.111 0.889 29 H 0.071 0.929 30 H 0.414 0.586 31 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.965 -4.235 -5.197 12.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.062 4.062 3 N -0.258 5.258 4 C -0.162 4.162 5 C -0.138 4.138 6 C -0.034 4.034 7 C -0.140 4.140 8 H 0.123 0.877 9 C 0.252 3.748 10 O -0.454 6.454 11 N -0.312 5.312 12 N -0.220 5.220 13 C 0.022 3.978 14 C -0.473 4.473 15 H 0.132 0.868 16 C -0.195 4.195 17 N -0.400 5.400 18 Si 0.813 3.187 19 H -0.191 1.191 20 H -0.203 1.203 21 H -0.167 1.167 22 N -0.158 5.158 23 H 0.274 0.726 24 H 0.117 0.883 25 H 0.119 0.881 26 H 0.106 0.894 27 H 0.158 0.842 28 H 0.129 0.871 29 H 0.090 0.910 30 H 0.255 0.745 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.461 -2.751 -4.775 11.824 hybrid contribution 0.496 -0.903 0.185 1.046 sum -9.965 -3.653 -4.589 11.563 Atomic orbital electron populations 1.20348 0.81412 1.05196 1.04947 1.24080 0.97173 0.81230 1.03745 1.70126 1.02496 1.30758 1.22412 1.21789 0.94206 0.93001 1.07212 1.21034 0.86241 0.95132 1.11356 1.19495 0.91174 0.99694 0.92998 1.21395 0.99306 0.94324 0.98939 0.87690 1.21742 0.83928 0.89803 0.79322 1.90657 1.62820 1.33586 1.58341 1.47903 1.09336 1.14308 1.59631 1.77416 1.21618 0.88963 1.33972 1.21727 0.87965 0.94685 0.93412 1.18977 0.96106 0.93691 1.38512 0.86796 1.27053 0.94557 1.03942 0.93906 1.69932 1.01005 1.38945 1.30143 0.85012 0.79776 0.75584 0.78334 1.19075 1.20348 1.16728 1.42933 1.05046 1.10665 1.57132 0.72565 0.88323 0.88134 0.89432 0.84244 0.87108 0.91020 0.74540 0.90392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.02 10.51 71.23 0.75 -0.28 16 2 C 0.20 5.85 8.15 138.13 1.13 6.98 16 3 N -0.54 -20.61 11.25 -188.13 -2.12 -22.73 16 4 C -0.01 -0.61 9.74 83.53 0.81 0.20 16 5 C -0.02 -0.78 6.13 40.95 0.25 -0.53 16 6 C 0.01 0.21 5.27 29.84 0.16 0.37 16 7 C -0.12 -4.87 3.00 -11.77 -0.04 -4.90 16 8 H 0.11 4.24 8.14 -2.39 -0.02 4.22 16 9 C 0.47 22.10 7.98 87.93 0.70 22.80 16 10 O -0.57 -29.07 15.13 -3.06 -0.05 -29.12 16 11 N -0.57 -27.55 7.10 -172.80 -1.23 -28.77 16 12 N -0.39 -20.60 10.62 -46.97 -0.50 -21.10 16 13 C 0.18 8.80 6.36 43.06 0.27 9.07 16 14 C -0.43 -19.52 9.30 23.05 0.21 -19.30 16 15 H 0.11 4.40 7.86 -2.91 -0.02 4.38 16 16 C 0.03 1.25 5.50 85.46 0.47 1.72 16 17 N -0.77 -38.51 11.97 21.94 0.26 -38.24 16 18 Si 0.99 32.93 29.57 68.60 2.03 34.96 16 19 H -0.27 -8.66 7.11 99.48 0.71 -7.95 16 20 H -0.28 -9.26 7.11 99.48 0.71 -8.56 16 21 H -0.24 -7.41 7.11 99.48 0.71 -6.70 16 22 N -0.55 -15.05 6.15 -174.61 -1.07 -16.12 16 23 H 0.43 8.14 8.96 -92.71 -0.83 7.31 16 24 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 26 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.14 6.17 7.50 -2.91 -0.02 6.15 16 28 H 0.11 3.29 8.13 -2.39 -0.02 3.27 16 29 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 30 H 0.41 18.11 8.96 -213.91 -1.92 16.19 16 31 H 0.29 12.91 8.29 -92.71 -0.77 12.14 16 Total: -1.00 -68.48 275.48 0.49 -67.99 By element: Atomic # 1 Polarization: 38.56 SS G_CDS: -1.56 Total: 37.01 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: 4.72 Total: 16.12 kcal Atomic # 7 Polarization: -122.31 SS G_CDS: -4.65 Total: -126.96 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.05 Total: -29.12 kcal Atomic # 14 Polarization: 32.93 SS G_CDS: 2.03 Total: 34.96 kcal Total: -68.48 0.49 -67.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259850868.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.843 kcal (2) G-P(sol) polarization free energy of solvation -68.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds