Wall clock time and date at job start Mon Mar 30 2020 21:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34670 * 126.59091 * 2 1 4 4 N 1.34125 * 108.02140 * 179.97438 * 3 2 1 5 5 C 1.30499 * 109.25533 * 359.97438 * 4 3 2 6 6 C 1.50700 * 125.65176 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47090 * 305.03120 * 6 5 4 8 8 H 1.09002 * 110.50845 * 56.27275 * 7 6 5 9 9 C 1.51567 * 110.55665 * 293.54028 * 7 6 5 10 10 O 1.21298 * 127.14072 * 61.39093 * 9 7 6 11 11 N 1.34777 * 105.71694 * 241.42723 * 9 7 6 12 12 N 1.39176 * 111.43486 * 359.97438 * 11 9 7 13 13 C 1.31432 * 112.35050 * 0.02562 * 12 11 9 14 14 C 1.39102 * 126.64954 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00065 * 179.97438 * 14 13 12 16 16 C 1.40586 * 119.99870 * 359.96366 * 14 13 12 17 17 N 1.30554 * 120.00141 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99882 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.46924 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47184 * 119.99817 * 18 16 14 21 21 H 1.48503 * 109.46925 * 239.99664 * 18 16 14 22 22 N 1.35047 * 108.70122 * 359.76948 * 5 4 3 23 23 H 0.97002 * 126.40008 * 180.26988 * 22 5 4 24 24 H 1.09001 * 109.46953 * 90.02685 * 1 2 3 25 25 H 1.09000 * 109.47318 * 210.02283 * 1 2 3 26 26 H 1.09000 * 109.47161 * 330.02914 * 1 2 3 27 27 H 1.08003 * 125.98676 * 359.95555 * 3 2 1 28 28 H 1.09002 * 109.46607 * 65.02495 * 6 5 4 29 29 H 1.08994 * 109.47411 * 185.02077 * 6 5 4 30 30 H 0.96996 * 124.28513 * 179.97438 * 11 9 7 31 31 H 0.97000 * 119.99976 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3098 1.0813 0.0000 4 7 3.5813 0.6542 0.0006 5 6 3.5969 -0.6507 0.0015 6 6 4.8319 -1.5144 0.0018 7 6 5.7240 -1.1289 -1.1798 8 1 5.9694 -0.0675 -1.1428 9 6 5.0479 -1.4734 -2.4919 10 8 3.9985 -1.0339 -2.9125 11 7 5.8542 -2.3700 -3.0938 12 7 6.9773 -2.6446 -2.3190 13 6 6.9842 -1.9690 -1.1917 14 6 7.9601 -2.0158 -0.2016 15 1 7.8570 -1.4110 0.6873 16 6 9.0804 -2.8505 -0.3578 17 7 9.2047 -3.5822 -1.4319 18 14 10.3907 -2.9139 0.9722 19 1 10.0167 -1.9977 2.0794 20 1 10.5015 -4.3004 1.4924 21 1 11.6958 -2.4935 0.4018 22 7 2.3230 -1.0990 0.0067 23 1 2.0392 -2.0266 0.0121 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3634 -0.8898 0.5142 26 1 -0.3633 0.8902 0.5134 27 1 1.9865 2.1118 -0.0007 28 1 5.3784 -1.3663 0.9332 29 1 4.5430 -2.5616 -0.0873 30 1 5.6746 -2.7730 -3.9576 31 1 9.9776 -4.1584 -1.5395 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259857802.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:07:53 Heat of formation + Delta-G solvation = 29.424430 kcal Electronic energy + Delta-G solvation = -17636.242574 eV Core-core repulsion = 14725.153728 eV Total energy + Delta-G solvation = -2911.088846 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.99994 -41.25964 -37.83444 -35.41832 -34.67254 -33.54483 -32.23946 -30.82543 -27.83621 -27.51761 -25.45200 -22.31152 -22.00196 -21.80916 -20.66195 -18.58332 -18.32621 -18.04349 -16.75967 -16.56743 -16.01501 -15.48955 -15.41615 -14.97320 -14.50820 -14.41027 -13.94376 -13.73762 -13.32172 -13.19937 -13.17519 -12.87691 -12.73763 -12.66022 -12.26918 -11.82317 -11.14528 -11.11510 -10.90365 -10.85388 -9.90239 -9.46507 -9.03266 -8.48713 -6.61531 1.06388 1.26278 1.53796 1.59582 1.69151 2.18437 2.25839 2.27761 2.30091 2.64030 3.32612 3.40598 3.67612 3.88598 4.15188 4.16616 4.33168 4.38019 4.54252 4.68539 4.79558 4.85422 4.96843 5.09467 5.18796 5.40902 5.42145 5.91663 6.05497 6.30821 6.53139 6.68866 6.88055 7.22231 7.41810 8.04058 8.43983 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.033042 B = 0.006125 C = 0.005441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.203830 B = 4569.963763 C = 5145.302160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.024 4.024 3 C -0.059 4.059 4 N -0.518 5.518 5 C 0.209 3.791 6 C 0.011 3.989 7 C -0.111 4.111 8 H 0.104 0.896 9 C 0.470 3.530 10 O -0.583 6.583 11 N -0.570 5.570 12 N -0.391 5.391 13 C 0.185 3.815 14 C -0.430 4.430 15 H 0.111 0.889 16 C 0.029 3.971 17 N -0.772 5.772 18 Si 0.993 3.007 19 H -0.246 1.246 20 H -0.269 1.269 21 H -0.273 1.273 22 N -0.555 5.555 23 H 0.425 0.575 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.100 0.900 27 H 0.183 0.817 28 H 0.116 0.884 29 H 0.079 0.921 30 H 0.415 0.585 31 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.125 1.314 7.172 11.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.141 4.141 3 C -0.206 4.206 4 N -0.238 5.238 5 C -0.055 4.055 6 C -0.029 4.029 7 C -0.135 4.135 8 H 0.122 0.878 9 C 0.255 3.745 10 O -0.464 6.464 11 N -0.307 5.307 12 N -0.219 5.219 13 C 0.024 3.976 14 C -0.470 4.470 15 H 0.129 0.871 16 C -0.194 4.194 17 N -0.397 5.397 18 Si 0.813 3.187 19 H -0.168 1.168 20 H -0.193 1.193 21 H -0.198 1.198 22 N -0.159 5.159 23 H 0.264 0.736 24 H 0.094 0.906 25 H 0.098 0.902 26 H 0.119 0.881 27 H 0.200 0.800 28 H 0.134 0.866 29 H 0.097 0.903 30 H 0.256 0.744 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.487 1.339 6.243 10.620 hybrid contribution -0.648 -0.605 -0.212 0.911 sum -9.134 0.733 6.031 10.970 Atomic orbital electron populations 1.20314 0.84052 1.04865 1.03395 1.21852 0.96093 0.86395 1.09713 1.22491 0.88161 0.99919 1.10074 1.70048 1.24088 1.09103 1.20571 1.22974 0.86301 0.91069 1.05203 1.19507 0.88806 0.96227 0.98373 1.21300 0.96233 1.02129 0.93879 0.87823 1.21686 0.84335 0.80309 0.88181 1.90600 1.23956 1.59317 1.72568 1.47885 1.20844 1.40500 1.21475 1.77448 1.04440 1.31479 1.08503 1.21695 0.91812 0.90775 0.93277 1.19028 1.02101 1.22421 1.03442 0.87138 1.27028 1.00820 0.93147 0.98365 1.69919 1.27247 1.16560 1.26008 0.84975 0.76502 0.79277 0.77962 1.16849 1.19347 1.19817 1.43094 1.06380 1.09996 1.56437 0.73619 0.90647 0.90182 0.88092 0.79996 0.86598 0.90272 0.74419 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.18 10.44 71.24 0.74 -0.44 16 2 C -0.02 -0.69 7.24 40.95 0.30 -0.39 16 3 C -0.06 -1.97 11.79 83.52 0.98 -0.98 16 4 N -0.52 -20.81 11.20 -188.13 -2.11 -22.92 16 5 C 0.21 7.82 6.39 138.13 0.88 8.70 16 6 C 0.01 0.41 5.34 29.85 0.16 0.57 16 7 C -0.11 -5.02 2.98 -11.77 -0.04 -5.06 16 8 H 0.10 4.92 8.14 -2.39 -0.02 4.90 16 9 C 0.47 22.81 8.02 87.93 0.71 23.51 16 10 O -0.58 -30.07 17.24 -3.09 -0.05 -30.13 16 11 N -0.57 -27.53 7.10 -172.79 -1.23 -28.75 16 12 N -0.39 -20.76 10.60 -46.97 -0.50 -21.26 16 13 C 0.19 9.23 6.37 43.07 0.27 9.51 16 14 C -0.43 -20.37 9.30 23.05 0.21 -20.15 16 15 H 0.11 4.68 7.86 -2.91 -0.02 4.66 16 16 C 0.03 1.33 5.51 85.46 0.47 1.80 16 17 N -0.77 -38.73 11.94 21.94 0.26 -38.47 16 18 Si 0.99 34.19 29.57 68.60 2.03 36.22 16 19 H -0.25 -7.91 7.11 99.48 0.71 -7.21 16 20 H -0.27 -9.00 7.11 99.48 0.71 -8.29 16 21 H -0.27 -9.36 7.11 99.48 0.71 -8.65 16 22 N -0.56 -17.03 6.15 -174.60 -1.07 -18.11 16 23 H 0.42 10.47 8.96 -92.71 -0.83 9.64 16 24 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.18 4.95 8.06 -2.91 -0.02 4.92 16 28 H 0.12 4.02 8.13 -2.39 -0.02 4.00 16 29 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 30 H 0.41 18.05 8.96 -213.91 -1.92 16.13 16 31 H 0.29 12.99 8.29 -92.71 -0.77 12.22 16 Total: -1.00 -68.03 279.46 0.47 -67.56 By element: Atomic # 1 Polarization: 40.34 SS G_CDS: -1.56 Total: 38.79 kcal Atomic # 6 Polarization: 12.37 SS G_CDS: 4.70 Total: 17.06 kcal Atomic # 7 Polarization: -124.86 SS G_CDS: -4.64 Total: -129.50 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -0.05 Total: -30.13 kcal Atomic # 14 Polarization: 34.19 SS G_CDS: 2.03 Total: 36.22 kcal Total: -68.03 0.47 -67.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259857802.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.983 kcal (2) G-P(sol) polarization free energy of solvation -68.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds