Wall clock time and date at job start Mon Mar 30 2020 21:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99598 * 2 1 4 4 H 1.48498 * 109.47006 * 269.99821 * 3 2 1 5 5 H 1.48501 * 109.47271 * 29.99893 * 3 2 1 6 6 H 1.48496 * 109.46945 * 149.99864 * 3 2 1 7 7 C 1.37878 * 120.00525 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99346 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00278 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.54142 * 59.88780 * 9 7 2 11 11 C 1.53099 * 109.50548 * 299.77988 * 9 7 2 12 12 O 1.43015 * 109.25617 * 183.21370 * 11 9 7 13 13 C 1.43021 * 113.73598 * 58.67352 * 12 11 9 14 14 C 1.53092 * 109.25473 * 301.32532 * 13 12 11 15 15 N 1.47010 * 109.26022 * 56.85362 * 14 13 12 16 16 C 1.46904 * 111.00321 * 177.60472 * 15 14 13 17 17 C 1.50697 * 109.47180 * 66.04034 * 16 15 14 18 18 C 1.38675 * 120.41610 * 90.00401 * 17 16 15 19 19 C 1.38631 * 118.41910 * 180.27639 * 18 17 16 20 20 C 1.38221 * 119.16046 * 359.47670 * 19 18 17 21 21 N 1.31852 * 120.76598 * 0.53648 * 20 19 18 22 22 C 1.31884 * 121.72537 * 359.73739 * 21 20 19 23 23 H 0.96995 * 120.00457 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.50372 * 63.28327 * 11 9 7 25 25 H 1.08992 * 109.50627 * 303.15259 * 11 9 7 26 26 H 1.09001 * 109.50344 * 181.38975 * 13 12 11 27 27 H 1.08992 * 109.54034 * 61.28521 * 13 12 11 28 28 H 1.08993 * 109.51197 * 296.91185 * 14 13 12 29 29 H 1.09005 * 109.50094 * 176.78450 * 14 13 12 30 30 H 1.09000 * 109.46564 * 306.04289 * 16 15 14 31 31 H 1.08999 * 109.47242 * 186.04723 * 16 15 14 32 32 H 1.08002 * 120.78673 * 359.97438 * 18 17 16 33 33 H 1.07999 * 120.41498 * 179.74544 * 19 18 17 34 34 H 1.08000 * 119.61806 * 180.27447 * 20 19 18 35 35 H 1.08006 * 119.61986 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0047 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5117 -1.1939 0.0000 10 1 3.8759 -0.6792 0.8891 11 6 4.0233 -0.4763 -1.2518 12 8 5.4515 -0.5447 -1.2841 13 6 5.9640 -1.8799 -1.2863 14 6 5.4720 -2.6116 -0.0349 15 7 4.0027 -2.5796 -0.0006 16 6 3.4867 -3.3215 1.1576 17 6 3.8904 -2.6159 2.4265 18 6 3.0708 -1.6442 2.9807 19 6 3.4853 -1.0174 4.1456 20 6 4.6880 -1.3868 4.7179 21 7 5.4420 -2.3153 4.1630 22 6 5.0820 -2.9286 3.0523 23 1 -0.4850 0.8400 0.0004 24 1 3.7094 0.5672 -1.2270 25 1 3.6156 -0.9587 -2.1401 26 1 7.0537 -1.8514 -1.2866 27 1 5.6134 -2.4035 -2.1756 28 1 5.8676 -2.1196 0.8536 29 1 5.8130 -3.6466 -0.0608 30 1 3.8992 -4.3304 1.1559 31 1 2.3994 -3.3735 1.1008 32 1 2.1341 -1.3787 2.5132 33 1 2.8742 -0.2531 4.6025 34 1 5.0160 -0.9064 5.6279 35 1 5.7262 -3.6839 2.6268 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259863388.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:07:56 Heat of formation + Delta-G solvation = 8.480214 kcal Electronic energy + Delta-G solvation = -19012.314974 eV Core-core repulsion = 16203.858262 eV Total energy + Delta-G solvation = -2808.456712 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.12168 -38.64314 -35.56066 -33.12269 -31.98455 -31.03725 -30.57907 -27.74274 -25.40636 -24.10225 -23.12846 -22.18486 -21.53437 -19.24050 -17.09539 -16.62397 -16.12191 -15.95917 -15.31965 -14.87897 -14.66090 -14.27647 -14.07008 -13.69864 -13.32799 -12.96789 -12.74633 -12.45697 -12.30890 -11.95019 -11.44600 -11.17542 -10.92573 -10.67857 -10.47865 -10.18249 -9.78081 -9.52647 -9.20434 -9.15176 -8.97906 -8.66805 -8.53018 -7.59295 -6.26814 -4.27192 1.46870 1.75068 3.13100 3.25376 3.29980 4.16782 4.21746 4.47924 4.63699 4.75065 5.03081 5.19901 5.32284 5.38569 5.51640 5.57741 5.62778 5.65722 5.81404 5.96221 6.02984 6.10310 6.20674 6.23275 6.32623 6.39281 6.56303 6.68084 6.86796 6.97587 7.13269 7.21650 7.68085 7.77660 7.82383 8.28624 8.44158 8.79129 9.33275 10.84454 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.017882 B = 0.011877 C = 0.008936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.423848 B = 2356.890843 C = 3132.660612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.078 3.922 3 Si 0.863 3.137 4 H -0.273 1.273 5 H -0.290 1.290 6 H -0.263 1.263 7 C -0.508 4.508 8 H 0.088 0.912 9 C 0.153 3.847 10 H 0.014 0.986 11 C 0.057 3.943 12 O -0.402 6.402 13 C 0.068 3.932 14 C 0.010 3.990 15 N -0.511 5.511 16 C 0.105 3.895 17 C -0.158 4.158 18 C -0.044 4.044 19 C -0.181 4.181 20 C 0.084 3.916 21 N -0.496 5.496 22 C 0.094 3.906 23 H 0.267 0.733 24 H 0.077 0.923 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.053 0.947 28 H 0.037 0.963 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.157 0.843 33 H 0.129 0.871 34 H 0.147 0.853 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.953 -3.951 3.750 9.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.125 4.125 3 Si 0.692 3.308 4 H -0.200 1.200 5 H -0.217 1.217 6 H -0.188 1.188 7 C -0.546 4.546 8 H 0.106 0.894 9 C 0.045 3.955 10 H 0.032 0.968 11 C -0.019 4.019 12 O -0.321 6.321 13 C -0.009 4.009 14 C -0.119 4.119 15 N -0.233 5.233 16 C -0.023 4.023 17 C -0.162 4.162 18 C -0.070 4.070 19 C -0.201 4.201 20 C -0.073 4.073 21 N -0.205 5.205 22 C -0.064 4.064 23 H 0.077 0.923 24 H 0.094 0.906 25 H 0.077 0.923 26 H 0.103 0.897 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.119 0.881 32 H 0.175 0.825 33 H 0.147 0.853 34 H 0.164 0.836 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 8.512 -4.129 3.681 10.151 hybrid contribution -0.280 1.560 0.297 1.613 sum 8.232 -2.569 3.978 9.497 Atomic orbital electron populations 1.69847 1.05938 1.27198 1.49574 1.24869 0.94681 0.98454 0.94532 0.87225 0.80387 0.84473 0.78735 1.20010 1.21674 1.18751 1.20841 0.87414 0.94890 1.51496 0.89439 1.20372 0.96933 0.84687 0.93461 0.96844 1.23387 0.78282 1.00287 0.99994 1.87878 1.22873 1.26153 1.95157 1.22502 0.97797 0.83816 0.96807 1.22838 0.90567 1.00275 0.98248 1.62545 1.05790 1.16548 1.38433 1.21124 1.02601 0.94913 0.83669 1.21756 0.96050 0.99291 0.99059 1.22095 1.00492 0.91874 0.92577 1.22194 0.98386 1.01767 0.97728 1.22595 0.91438 0.94260 0.99050 1.67589 1.33636 1.08419 1.10858 1.22572 0.94359 0.97945 0.91476 0.92266 0.90572 0.92272 0.89699 0.92829 0.94496 0.90691 0.91231 0.88121 0.82534 0.85294 0.83572 0.83751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.98 13.96 55.43 0.77 -24.21 16 2 C 0.08 2.07 5.45 -17.82 -0.10 1.97 16 3 Si 0.86 20.73 24.35 -169.99 -4.14 16.59 16 4 H -0.27 -6.49 6.90 56.52 0.39 -6.10 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.26 -6.36 6.53 56.52 0.37 -5.99 16 7 C -0.51 -12.85 6.86 -34.44 -0.24 -13.09 16 8 H 0.09 2.39 6.76 -52.49 -0.35 2.03 16 9 C 0.15 3.48 0.96 -68.75 -0.07 3.41 16 10 H 0.01 0.34 5.28 -51.93 -0.27 0.07 16 11 C 0.06 1.28 5.74 37.21 0.21 1.49 16 12 O -0.40 -8.46 10.83 -35.23 -0.38 -8.84 16 13 C 0.07 1.15 7.01 37.20 0.26 1.41 16 14 C 0.01 0.16 5.14 -3.72 -0.02 0.14 16 15 N -0.51 -9.97 4.74 -229.17 -1.09 -11.06 16 16 C 0.11 1.85 5.23 -4.98 -0.03 1.83 16 17 C -0.16 -2.80 4.02 -104.48 -0.42 -3.22 16 18 C -0.04 -0.82 8.00 -39.28 -0.31 -1.14 16 19 C -0.18 -2.99 10.11 -39.44 -0.40 -3.38 16 20 C 0.08 1.32 11.18 -17.55 -0.20 1.12 16 21 N -0.50 -8.48 10.36 -13.25 -0.14 -8.61 16 22 C 0.09 1.55 9.21 -17.55 -0.16 1.39 16 23 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 24 H 0.08 1.80 3.39 -51.93 -0.18 1.63 16 25 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 26 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.04 0.67 6.34 -51.93 -0.33 0.34 16 29 H 0.07 1.04 8.12 -51.93 -0.42 0.62 16 30 H 0.07 1.03 8.06 -51.93 -0.42 0.61 16 31 H 0.10 1.94 6.37 -51.93 -0.33 1.60 16 32 H 0.16 3.27 6.57 -52.49 -0.34 2.92 16 33 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 34 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 35 H 0.15 2.05 8.04 -52.48 -0.42 1.63 16 LS Contribution 271.45 15.07 4.09 4.09 Total: -1.00 -28.87 271.45 -6.71 -35.58 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -4.36 Total: 4.52 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -1.46 Total: -8.07 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: -0.45 Total: -43.88 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -0.38 Total: -8.84 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.14 Total: 16.59 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.87 -6.71 -35.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259863388.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.055 kcal (2) G-P(sol) polarization free energy of solvation -28.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds