Wall clock time and date at job start Mon Mar 30 2020 21:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99598 * 2 1 4 4 H 1.48498 * 109.47006 * 269.99821 * 3 2 1 5 5 H 1.48501 * 109.47271 * 29.99893 * 3 2 1 6 6 H 1.48496 * 109.46945 * 149.99864 * 3 2 1 7 7 C 1.37878 * 120.00525 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99346 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00278 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.54142 * 59.88780 * 9 7 2 11 11 C 1.53099 * 109.50548 * 299.77988 * 9 7 2 12 12 O 1.43015 * 109.25617 * 183.21370 * 11 9 7 13 13 C 1.43021 * 113.73598 * 58.67352 * 12 11 9 14 14 C 1.53092 * 109.25473 * 301.32532 * 13 12 11 15 15 N 1.47010 * 109.26022 * 56.85362 * 14 13 12 16 16 C 1.46904 * 111.00321 * 177.60472 * 15 14 13 17 17 C 1.50697 * 109.47180 * 66.04034 * 16 15 14 18 18 C 1.38675 * 120.41610 * 90.00401 * 17 16 15 19 19 C 1.38631 * 118.41910 * 180.27639 * 18 17 16 20 20 C 1.38221 * 119.16046 * 359.47670 * 19 18 17 21 21 N 1.31852 * 120.76598 * 0.53648 * 20 19 18 22 22 C 1.31884 * 121.72537 * 359.73739 * 21 20 19 23 23 H 0.96995 * 120.00457 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.50372 * 63.28327 * 11 9 7 25 25 H 1.08992 * 109.50627 * 303.15259 * 11 9 7 26 26 H 1.09001 * 109.50344 * 181.38975 * 13 12 11 27 27 H 1.08992 * 109.54034 * 61.28521 * 13 12 11 28 28 H 1.08993 * 109.51197 * 296.91185 * 14 13 12 29 29 H 1.09005 * 109.50094 * 176.78450 * 14 13 12 30 30 H 1.09000 * 109.46564 * 306.04289 * 16 15 14 31 31 H 1.08999 * 109.47242 * 186.04723 * 16 15 14 32 32 H 1.08002 * 120.78673 * 359.97438 * 18 17 16 33 33 H 1.07999 * 120.41498 * 179.74544 * 19 18 17 34 34 H 1.08000 * 119.61806 * 180.27447 * 20 19 18 35 35 H 1.08006 * 119.61986 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0047 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5117 -1.1939 0.0000 10 1 3.8759 -0.6792 0.8891 11 6 4.0233 -0.4763 -1.2518 12 8 5.4515 -0.5447 -1.2841 13 6 5.9640 -1.8799 -1.2863 14 6 5.4720 -2.6116 -0.0349 15 7 4.0027 -2.5796 -0.0006 16 6 3.4867 -3.3215 1.1576 17 6 3.8904 -2.6159 2.4265 18 6 3.0708 -1.6442 2.9807 19 6 3.4853 -1.0174 4.1456 20 6 4.6880 -1.3868 4.7179 21 7 5.4420 -2.3153 4.1630 22 6 5.0820 -2.9286 3.0523 23 1 -0.4850 0.8400 0.0004 24 1 3.7094 0.5672 -1.2270 25 1 3.6156 -0.9587 -2.1401 26 1 7.0537 -1.8514 -1.2866 27 1 5.6134 -2.4035 -2.1756 28 1 5.8676 -2.1196 0.8536 29 1 5.8130 -3.6466 -0.0608 30 1 3.8992 -4.3304 1.1559 31 1 2.3994 -3.3735 1.1008 32 1 2.1341 -1.3787 2.5132 33 1 2.8742 -0.2531 4.6025 34 1 5.0160 -0.9064 5.6279 35 1 5.7262 -3.6839 2.6268 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259863388.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:07:55 Heat of formation + Delta-G solvation = -13.214547 kcal Electronic energy + Delta-G solvation = -19013.255729 eV Core-core repulsion = 16203.858262 eV Total energy + Delta-G solvation = -2809.397467 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.50963 -40.13458 -37.08467 -35.04618 -33.34428 -32.53672 -32.17311 -29.21587 -27.17640 -25.59969 -24.55975 -23.74399 -22.91100 -20.84817 -19.04411 -17.96453 -17.70275 -17.37534 -16.82372 -16.34757 -16.16746 -15.92902 -15.71446 -15.29808 -14.80684 -14.52735 -14.32942 -13.92202 -13.69109 -13.53193 -13.05185 -12.77329 -12.54217 -12.37623 -12.09296 -11.90826 -11.50909 -11.30157 -10.87716 -10.60751 -10.52847 -10.38766 -9.88754 -9.14420 -8.34664 -6.35806 0.18494 0.38212 1.19672 1.28489 1.34761 2.21236 2.83635 2.91738 3.01417 3.19036 3.55838 3.93739 3.97397 4.09033 4.18648 4.20374 4.23097 4.33206 4.37549 4.49182 4.57535 4.61603 4.78390 4.83828 4.86269 4.94163 5.07424 5.20404 5.31790 5.39279 5.50616 5.81492 5.93109 6.14414 6.25344 6.57380 6.70852 7.00146 7.27130 8.80232 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.017882 B = 0.011877 C = 0.008936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.423848 B = 2356.890843 C = 3132.660612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.037 3.963 3 Si 0.912 3.088 4 H -0.267 1.267 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.491 4.491 8 H 0.058 0.942 9 C 0.164 3.836 10 H -0.004 1.004 11 C 0.060 3.940 12 O -0.415 6.415 13 C 0.058 3.942 14 C 0.011 3.989 15 N -0.520 5.520 16 C 0.108 3.892 17 C -0.166 4.166 18 C -0.069 4.069 19 C -0.186 4.186 20 C 0.087 3.913 21 N -0.507 5.507 22 C 0.098 3.902 23 H 0.268 0.732 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.122 0.878 27 H 0.063 0.937 28 H 0.028 0.972 29 H 0.115 0.885 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.123 0.877 33 H 0.146 0.854 34 H 0.182 0.818 35 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.618 -4.567 4.233 12.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.163 4.163 3 Si 0.741 3.259 4 H -0.193 1.193 5 H -0.216 1.216 6 H -0.191 1.191 7 C -0.529 4.529 8 H 0.076 0.924 9 C 0.055 3.945 10 H 0.014 0.986 11 C -0.016 4.016 12 O -0.334 6.334 13 C -0.018 4.018 14 C -0.117 4.117 15 N -0.243 5.243 16 C -0.020 4.020 17 C -0.170 4.170 18 C -0.095 4.095 19 C -0.206 4.206 20 C -0.069 4.069 21 N -0.215 5.215 22 C -0.059 4.059 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.140 0.860 27 H 0.081 0.919 28 H 0.046 0.954 29 H 0.133 0.867 30 H 0.123 0.877 31 H 0.090 0.910 32 H 0.141 0.859 33 H 0.164 0.836 34 H 0.199 0.801 35 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 11.198 -4.759 4.161 12.859 hybrid contribution -1.062 1.634 0.187 1.958 sum 10.136 -3.125 4.348 11.463 Atomic orbital electron populations 1.69952 1.07300 1.27837 1.51918 1.25397 0.95075 1.01050 0.94763 0.86420 0.79062 0.81594 0.78864 1.19343 1.21558 1.19054 1.20910 0.89123 0.93473 1.49443 0.92371 1.20062 0.94806 0.86796 0.92807 0.98638 1.23135 0.79727 0.99304 0.99463 1.87853 1.21326 1.28989 1.95226 1.22895 0.99800 0.81939 0.97183 1.22967 0.88298 1.02611 0.97836 1.62494 1.07944 1.14333 1.39522 1.21091 1.01170 0.96412 0.83318 1.21733 0.96679 0.99336 0.99254 1.21962 0.99947 0.93562 0.94072 1.22420 0.99167 1.01950 0.97026 1.23137 0.90566 0.93509 0.99719 1.67691 1.33922 1.08848 1.11076 1.22919 0.93848 0.98030 0.91090 0.92272 0.91978 0.92642 0.86048 0.91913 0.95351 0.86741 0.87671 0.90966 0.85860 0.83575 0.80073 0.80999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.17 13.96 21.45 0.30 -53.87 16 2 C 0.04 2.00 5.45 84.65 0.46 2.46 16 3 Si 0.91 43.60 24.35 68.60 1.67 45.28 16 4 H -0.27 -12.39 6.90 99.48 0.69 -11.71 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 6 H -0.27 -12.70 6.53 99.48 0.65 -12.05 16 7 C -0.49 -25.63 6.86 25.60 0.18 -25.46 16 8 H 0.06 3.34 6.76 -2.91 -0.02 3.32 16 9 C 0.16 7.43 0.96 44.18 0.04 7.47 16 10 H 0.00 -0.19 5.28 -2.39 -0.01 -0.20 16 11 C 0.06 2.69 5.74 72.02 0.41 3.10 16 12 O -0.41 -16.62 10.83 -148.98 -1.61 -18.23 16 13 C 0.06 1.75 7.01 72.01 0.50 2.26 16 14 C 0.01 0.33 5.14 86.31 0.44 0.78 16 15 N -0.52 -19.62 4.74 -878.96 -4.16 -23.78 16 16 C 0.11 3.71 5.23 85.56 0.45 4.16 16 17 C -0.17 -5.73 4.02 -19.77 -0.08 -5.81 16 18 C -0.07 -2.60 8.00 22.47 0.18 -2.42 16 19 C -0.19 -5.96 10.11 22.36 0.23 -5.74 16 20 C 0.09 2.53 11.18 84.69 0.95 3.48 16 21 N -0.51 -15.85 10.36 -195.84 -2.03 -17.88 16 22 C 0.10 2.98 9.21 84.67 0.78 3.76 16 23 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 24 H 0.06 2.92 3.39 -2.39 -0.01 2.91 16 25 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 27 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.03 0.93 6.34 -2.39 -0.02 0.91 16 29 H 0.11 2.59 8.12 -2.38 -0.02 2.57 16 30 H 0.11 2.82 8.06 -2.39 -0.02 2.80 16 31 H 0.07 2.87 6.37 -2.39 -0.02 2.86 16 32 H 0.12 5.46 6.57 -2.91 -0.02 5.44 16 33 H 0.15 4.02 8.06 -2.91 -0.02 4.00 16 34 H 0.18 3.85 8.06 -2.91 -0.02 3.83 16 35 H 0.17 4.15 8.04 -2.91 -0.02 4.13 16 Total: -1.00 -63.23 271.45 -0.28 -63.51 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 1.02 Total: 16.95 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: 4.54 Total: -11.96 kcal Atomic # 7 Polarization: -89.65 SS G_CDS: -5.89 Total: -95.54 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -1.61 Total: -18.23 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.67 Total: 45.28 kcal Total: -63.23 -0.28 -63.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259863388.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.299 kcal (2) G-P(sol) polarization free energy of solvation -63.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds