Wall clock time and date at job start Mon Mar 30 2020 21:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50695 * 109.47205 * 2 1 4 4 N 1.31297 * 126.13845 * 269.95489 * 3 2 1 5 5 N 1.28530 * 110.33634 * 180.02562 * 4 3 2 6 6 C 1.33044 * 109.54354 * 0.02562 * 5 4 3 7 7 C 1.39994 * 126.66352 * 180.26425 * 6 5 4 8 8 H 1.08000 * 120.00336 * 173.78060 * 7 6 5 9 9 C 1.40312 * 120.00075 * 353.78255 * 7 6 5 10 10 N 1.30657 * 119.99801 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00060 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46791 * 59.99820 * 11 9 7 13 13 H 1.48498 * 109.47115 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47400 * 300.00246 * 11 9 7 15 15 N 1.36108 * 126.14155 * 90.00050 * 3 2 1 16 16 C 1.39749 * 127.13775 * 359.97438 * 15 3 2 17 17 C 1.41978 * 126.89127 * 226.90974 * 16 15 3 18 18 C 1.35267 * 103.95969 * 179.97438 * 17 16 15 19 19 C 1.50699 * 126.70366 * 179.97438 * 18 17 16 20 20 O 1.34090 * 106.59873 * 359.97438 * 18 17 16 21 21 N 1.20913 * 111.73643 * 359.74869 * 20 18 17 22 22 H 1.09007 * 109.47460 * 300.00178 * 1 2 3 23 23 H 1.09002 * 109.47277 * 60.00380 * 1 2 3 24 24 H 1.09004 * 109.47317 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47503 * 239.99211 * 2 1 3 26 26 H 1.09007 * 109.46969 * 119.99931 * 2 1 3 27 27 H 0.97001 * 119.99731 * 180.02562 * 10 9 7 28 28 H 1.07998 * 128.02306 * 359.94235 * 17 16 15 29 29 H 1.08997 * 109.47130 * 90.00026 * 19 18 17 30 30 H 1.09000 * 109.47155 * 210.00107 * 19 18 17 31 31 H 1.09001 * 109.47088 * 329.99402 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2912 2.1505 -1.0603 5 7 2.7037 3.3164 -0.7103 6 6 2.7325 3.3983 0.6173 7 6 3.1196 4.5079 1.3781 8 1 3.0070 4.4920 2.4521 9 6 3.6538 5.6406 0.7454 10 7 3.7895 5.6600 -0.5539 11 14 4.1695 7.1214 1.7606 12 1 5.2248 6.7175 2.7242 13 1 4.6991 8.1778 0.8614 14 1 2.9954 7.6456 2.5034 15 7 2.2999 2.1776 1.0992 16 6 2.1654 1.7987 2.4376 17 6 1.5495 2.5447 3.4768 18 6 1.6769 1.7531 4.5663 19 6 1.1939 2.0562 5.9612 20 8 2.3170 0.6461 4.1627 21 7 2.5758 0.6837 2.9822 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8901 27 1 4.1591 6.4429 -0.9913 28 1 1.0871 3.5185 3.4125 29 1 0.1755 1.6866 6.0814 30 1 1.8456 1.5676 6.6856 31 1 1.2113 3.1336 6.1257 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259866045.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:08:00 Heat of formation + Delta-G solvation = 104.330622 kcal Electronic energy + Delta-G solvation = -17991.465978 eV Core-core repulsion = 15083.625309 eV Total energy + Delta-G solvation = -2907.840670 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -46.07204 -42.93362 -36.51095 -35.91624 -34.72668 -34.36552 -32.61516 -30.73752 -28.66736 -27.71594 -25.11756 -24.72621 -23.27872 -22.54272 -20.36787 -19.30273 -18.77777 -18.33501 -17.76208 -16.76024 -16.32424 -15.58835 -15.26773 -14.97464 -14.76583 -14.49914 -13.91159 -13.58616 -13.37675 -13.30322 -13.07615 -12.93058 -12.70295 -12.54418 -12.20194 -12.14216 -11.88857 -11.79418 -11.34682 -10.55624 -10.47062 -10.21823 -9.74581 -8.63443 -6.74992 0.32514 0.80528 1.32824 1.37418 1.53032 1.60701 1.73026 2.17513 2.23621 2.38208 3.19490 3.42789 3.54881 3.86817 3.96988 4.12302 4.32367 4.37447 4.56765 4.70316 4.78750 4.81190 4.84182 4.89497 4.94265 5.13168 5.18451 5.22974 5.28028 5.48230 6.09051 6.14682 6.64187 6.81679 7.22764 8.32728 8.57628 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.017229 B = 0.010111 C = 0.006738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.752509 B = 2768.637196 C = 4154.661034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.019 4.019 3 C 0.092 3.908 4 N -0.329 5.329 5 N -0.395 5.395 6 C 0.322 3.678 7 C -0.461 4.461 8 H 0.103 0.897 9 C 0.028 3.972 10 N -0.780 5.780 11 Si 1.007 2.993 12 H -0.256 1.256 13 H -0.268 1.268 14 H -0.245 1.245 15 N -0.462 5.462 16 C 0.237 3.763 17 C -0.244 4.244 18 C 0.002 3.998 19 C -0.068 4.068 20 O 0.115 5.885 21 N -0.398 5.398 22 H 0.036 0.964 23 H 0.049 0.951 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.289 0.711 28 H 0.181 0.819 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.786 -3.947 15.525 17.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.059 4.059 3 C -0.175 4.175 4 N -0.166 5.166 5 N -0.239 5.239 6 C 0.081 3.919 7 C -0.501 4.501 8 H 0.121 0.879 9 C -0.194 4.194 10 N -0.404 5.404 11 Si 0.825 3.175 12 H -0.180 1.180 13 H -0.192 1.192 14 H -0.168 1.168 15 N -0.163 5.163 16 C -0.011 4.011 17 C -0.267 4.267 18 C -0.062 4.062 19 C -0.125 4.125 20 O 0.048 5.952 21 N -0.105 5.105 22 H 0.055 0.945 23 H 0.068 0.932 24 H 0.114 0.886 25 H 0.112 0.888 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.198 0.802 29 H 0.131 0.869 30 H 0.124 0.876 31 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.949 -4.557 13.256 14.865 hybrid contribution 0.042 1.012 0.831 1.310 sum -4.907 -3.545 14.087 15.332 Atomic orbital electron populations 1.21622 0.92932 1.03141 1.00964 1.19842 0.97205 0.85455 1.03429 1.24958 1.11185 0.98696 0.82639 1.73860 1.15309 1.01515 1.25927 1.75509 1.30209 1.10236 1.07967 1.22222 0.94121 0.84958 0.90619 1.18777 1.39920 0.96376 0.95014 0.87895 1.27104 0.93222 1.02732 0.96298 1.70063 1.28600 1.30157 1.11621 0.84896 0.79869 0.74710 0.78035 1.17954 1.19210 1.16824 1.42963 1.57535 1.13628 1.02177 1.20442 1.00647 0.93536 0.86443 1.22521 1.08355 1.04743 0.91104 1.25155 0.95679 0.85429 0.99958 1.20676 1.03232 1.05028 0.83518 1.84780 1.56330 1.37323 1.16747 1.74031 1.21720 1.22058 0.92686 0.94527 0.93207 0.88563 0.88810 0.90726 0.90040 0.80202 0.86894 0.87554 0.87240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.21 9.89 71.98 0.71 -3.50 16 2 C -0.02 -0.77 6.27 29.85 0.19 -0.58 16 3 C 0.09 4.78 7.28 137.55 1.00 5.78 16 4 N -0.33 -19.79 12.20 -49.42 -0.60 -20.39 16 5 N -0.39 -25.60 10.54 -55.01 -0.58 -26.18 16 6 C 0.32 19.22 7.49 133.36 1.00 20.22 16 7 C -0.46 -25.20 8.98 23.20 0.21 -24.99 16 8 H 0.10 5.03 6.74 -2.91 -0.02 5.01 16 9 C 0.03 1.46 5.50 85.37 0.47 1.93 16 10 N -0.78 -44.41 11.97 21.89 0.26 -44.15 16 11 Si 1.01 37.17 29.56 68.60 2.03 39.19 16 12 H -0.26 -8.99 7.11 99.48 0.71 -8.29 16 13 H -0.27 -9.49 7.11 99.48 0.71 -8.79 16 14 H -0.24 -8.26 7.11 99.48 0.71 -7.56 16 15 N -0.46 -24.41 3.03 -340.54 -1.03 -25.44 16 16 C 0.24 10.35 7.14 134.01 0.96 11.31 16 17 C -0.24 -8.30 9.92 22.51 0.22 -8.08 16 18 C 0.00 0.05 7.48 25.00 0.19 0.24 16 19 C -0.07 -0.77 10.45 71.24 0.74 -0.03 16 20 O 0.12 3.57 11.19 71.17 0.80 4.36 16 21 N -0.40 -15.81 11.15 -56.22 -0.63 -16.44 16 22 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 23 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.10 2.36 8.14 -2.38 -0.02 2.34 16 25 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 26 H 0.07 2.85 7.07 -2.38 -0.02 2.83 16 27 H 0.29 14.74 8.29 -92.71 -0.77 13.97 16 28 H 0.18 5.81 8.01 -2.91 -0.02 5.78 16 29 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -79.59 278.45 7.09 -72.50 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 1.16 Total: 14.24 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 5.69 Total: 2.30 kcal Atomic # 7 Polarization: -130.02 SS G_CDS: -2.58 Total: -132.60 kcal Atomic # 8 Polarization: 3.57 SS G_CDS: 0.80 Total: 4.36 kcal Atomic # 14 Polarization: 37.17 SS G_CDS: 2.03 Total: 39.19 kcal Total: -79.59 7.09 -72.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259866045.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.835 kcal (2) G-P(sol) polarization free energy of solvation -79.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds