Wall clock time and date at job start Mon Mar 30 2020 21:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35290 * 126.70422 * 2 1 4 4 C 1.41934 * 103.95282 * 179.97438 * 3 2 1 5 5 N 1.39997 * 126.88237 * 179.97438 * 4 3 2 6 6 C 1.36356 * 127.11536 * 0.04861 * 5 4 3 7 7 N 1.30490 * 107.19594 * 179.97438 * 6 5 4 8 8 N 1.28545 * 109.92125 * 359.76242 * 7 6 5 9 9 C 1.30493 * 109.92060 * 0.39292 * 8 7 6 10 10 C 1.50696 * 126.40609 * 179.88653 * 9 8 7 11 11 C 1.52998 * 109.46969 * 269.68647 * 10 9 8 12 12 C 1.50706 * 109.47348 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99302 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00436 * 179.72505 * 12 11 10 15 15 N 1.31515 * 119.99684 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00405 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46683 * 359.97438 * 16 14 12 18 18 H 1.48492 * 109.47426 * 119.99743 * 16 14 12 19 19 H 1.48501 * 109.46833 * 239.99986 * 16 14 12 20 20 N 1.30639 * 106.24039 * 0.22479 * 4 3 2 21 21 O 1.20919 * 111.49320 * 359.59977 * 20 4 3 22 22 H 1.09004 * 109.47272 * 89.99662 * 1 2 3 23 23 H 1.09001 * 109.47429 * 210.00130 * 1 2 3 24 24 H 1.09001 * 109.47142 * 329.99932 * 1 2 3 25 25 H 1.07998 * 128.02644 * 359.97438 * 3 2 1 26 26 H 1.08003 * 126.40077 * 359.97438 * 6 5 4 27 27 H 1.09000 * 109.47664 * 149.68575 * 10 9 8 28 28 H 1.09002 * 109.46824 * 29.68046 * 10 9 8 29 29 H 1.09001 * 109.47671 * 59.99812 * 11 10 9 30 30 H 1.08998 * 109.47454 * 299.99809 * 11 10 9 31 31 H 0.97004 * 120.00247 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3157 1.0847 0.0000 4 6 3.6246 0.5358 0.0006 5 7 4.8325 1.2435 0.0004 6 6 4.9927 2.5976 0.0004 7 7 6.2760 2.8342 0.0006 8 7 6.9259 1.7251 0.0058 9 6 6.0921 0.7213 0.0007 10 6 6.4537 -0.7417 0.0017 11 6 6.5761 -1.2377 -1.4405 12 6 6.9384 -2.7006 -1.4396 13 1 7.0687 -3.2239 -0.5039 14 6 7.0984 -3.3719 -2.6332 15 7 6.9344 -2.7358 -3.7725 16 14 7.5467 -5.1853 -2.6321 17 1 7.6724 -5.6632 -1.2317 18 1 6.4853 -5.9581 -3.3258 19 1 8.8393 -5.3761 -3.3377 20 7 3.4764 -0.7622 -0.0040 21 8 2.3084 -1.0748 0.0006 22 1 -0.3634 0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 2.0312 2.1265 -0.0004 26 1 4.2048 3.3362 0.0002 27 1 5.6770 -1.3077 0.5158 28 1 7.4049 -0.8804 0.5155 29 1 7.3529 -0.6718 -1.9548 30 1 5.6250 -1.0989 -1.9545 31 1 7.0466 -3.2082 -4.6123 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259892597.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:08:08 Heat of formation + Delta-G solvation = 139.547842 kcal Electronic energy + Delta-G solvation = -17546.105788 eV Core-core repulsion = 14639.792251 eV Total energy + Delta-G solvation = -2906.313536 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.20175 -42.86335 -35.91814 -34.27903 -33.75585 -32.01285 -31.84007 -29.22863 -28.10995 -25.53703 -24.43587 -23.03368 -21.72484 -21.45403 -19.43959 -17.96618 -17.89579 -16.85150 -16.38185 -15.72615 -15.35735 -14.44979 -14.09959 -13.99716 -13.57195 -13.44383 -13.05703 -12.72601 -12.30131 -12.03392 -11.50101 -11.43014 -11.24623 -10.96185 -10.64920 -10.31856 -9.90920 -9.83497 -9.77546 -9.32101 -9.17564 -8.73443 -8.36370 -6.00482 -4.03476 1.12282 1.41273 2.14794 2.65560 2.89075 3.11272 3.32431 3.39399 3.44113 3.87263 4.26039 4.45380 4.59452 4.70089 4.83470 5.00043 5.07982 5.26449 5.30183 5.35982 5.43642 5.65500 5.83763 6.20938 6.40548 6.44876 6.76606 7.05265 7.60895 7.71462 7.96389 8.08281 8.34786 8.91899 9.01613 9.60180 11.11191 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.018606 B = 0.007255 C = 0.005547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.539878 B = 3858.659544 C = 5046.274808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.014 4.014 3 C -0.234 4.234 4 C 0.231 3.769 5 N -0.409 5.409 6 C 0.148 3.852 7 N -0.285 5.285 8 N -0.299 5.299 9 C 0.235 3.765 10 C -0.040 4.040 11 C 0.038 3.962 12 C -0.516 4.516 13 H 0.059 0.941 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.895 3.105 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.283 1.283 20 N -0.328 5.328 21 O 0.125 5.875 22 H 0.092 0.908 23 H 0.088 0.912 24 H 0.093 0.907 25 H 0.180 0.820 26 H 0.220 0.780 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.022 0.978 30 H 0.015 0.985 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.224 7.486 8.272 19.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.078 4.078 3 C -0.257 4.257 4 C -0.018 4.018 5 N -0.103 5.103 6 C -0.139 4.139 7 N -0.122 5.122 8 N -0.136 5.136 9 C -0.030 4.030 10 C -0.080 4.080 11 C -0.001 4.001 12 C -0.554 4.554 13 H 0.078 0.922 14 C -0.143 4.143 15 N -0.534 5.534 16 Si 0.723 3.277 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.209 1.209 20 N -0.030 5.030 21 O 0.055 5.945 22 H 0.111 0.889 23 H 0.106 0.894 24 H 0.112 0.888 25 H 0.197 0.803 26 H 0.237 0.763 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.041 0.959 30 H 0.033 0.967 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.981 7.248 8.093 17.705 hybrid contribution -1.317 -0.674 -0.286 1.507 sum -15.297 6.573 7.806 18.389 Atomic orbital electron populations 1.20393 0.83317 1.04917 1.04565 1.24400 0.96683 0.85628 1.01078 1.22048 0.88838 1.01737 1.13062 1.20226 0.86141 0.89331 1.06098 1.43205 1.04230 1.07124 1.55725 1.26500 0.98346 0.82227 1.06833 1.74171 1.01182 1.20026 1.16796 1.74320 1.24977 0.93824 1.20431 1.26269 0.78387 1.00520 0.97868 1.20664 1.02201 0.81153 1.03959 1.19013 0.97475 0.96286 0.87291 1.21128 1.47414 0.94282 0.92605 0.92239 1.25003 0.95359 0.98440 0.95525 1.69990 1.49766 1.36315 0.97296 0.86481 0.78034 0.85017 0.78170 1.19589 1.21027 1.20940 1.74387 0.96686 1.12683 1.19266 1.84991 1.10408 1.32322 1.66768 0.88922 0.89351 0.88830 0.80284 0.76330 0.89911 0.89140 0.95935 0.96697 0.93003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.45 36.01 0.38 0.02 16 2 C -0.01 -0.14 7.48 -35.36 -0.26 -0.40 16 3 C -0.23 -2.52 10.75 -39.22 -0.42 -2.94 16 4 C 0.23 3.73 7.89 -154.43 -1.22 2.52 16 5 N -0.41 -7.38 3.00 -60.69 -0.18 -7.56 16 6 C 0.15 2.30 12.46 -89.17 -1.11 1.19 16 7 N -0.29 -5.57 12.19 29.85 0.36 -5.21 16 8 N -0.30 -6.63 12.19 32.95 0.40 -6.23 16 9 C 0.24 5.04 7.29 -154.21 -1.12 3.92 16 10 C -0.04 -0.91 5.23 -27.89 -0.15 -1.05 16 11 C 0.04 1.03 4.96 -27.88 -0.14 0.89 16 12 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 13 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -27.59 13.29 55.43 0.74 -26.86 16 16 Si 0.90 22.02 29.54 -169.99 -5.02 16.99 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 20 N -0.33 -5.85 10.14 31.25 0.32 -5.53 16 21 O 0.12 1.79 11.19 17.11 0.19 1.98 16 22 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.18 1.21 8.06 -52.49 -0.42 0.79 16 26 H 0.22 2.07 8.06 -52.48 -0.42 1.65 16 27 H 0.08 1.82 6.62 -51.93 -0.34 1.48 16 28 H 0.09 1.98 8.14 -51.93 -0.42 1.56 16 29 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.01 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 281.56 15.07 4.24 4.24 Total: -1.00 -36.21 281.56 -6.67 -42.89 By element: Atomic # 1 Polarization: -1.96 SS G_CDS: -3.27 Total: -5.22 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -4.46 Total: -9.50 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 1.64 Total: -51.39 kcal Atomic # 8 Polarization: 1.79 SS G_CDS: 0.19 Total: 1.98 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -36.21 -6.67 -42.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259892597.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.437 kcal (2) G-P(sol) polarization free energy of solvation -36.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds