Wall clock time and date at job start Mon Mar 30 2020 21:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30567 * 125.94925 * 2 1 4 4 N 1.39951 * 108.85746 * 180.02562 * 3 2 1 5 5 H 0.96992 * 125.81089 * 180.02562 * 4 3 2 6 6 C 1.34750 * 108.37413 * 359.75269 * 4 3 2 7 7 C 1.37831 * 107.39885 * 0.39281 * 6 4 3 8 8 C 1.47555 * 126.37553 * 179.87274 * 7 6 4 9 9 N 1.29364 * 126.52755 * 179.71275 * 8 7 6 10 10 N 1.39160 * 112.78373 * 179.97438 * 9 8 7 11 11 C 1.46506 * 124.36685 * 179.97438 * 10 9 8 12 12 C 1.34874 * 111.26972 * 0.26453 * 10 9 8 13 13 O 1.21322 * 127.33542 * 179.71844 * 12 10 9 14 14 C 1.51448 * 126.51841 * 359.68313 * 8 7 6 15 15 H 1.09000 * 110.58730 * 61.48302 * 14 8 7 16 16 C 1.50699 * 110.58775 * 298.56583 * 14 8 7 17 17 H 1.07992 * 120.00125 * 0.02562 * 16 14 8 18 18 C 1.37878 * 119.99777 * 179.97438 * 16 14 8 19 19 N 1.31507 * 120.00260 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 119.99750 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47307 * 90.00298 * 20 18 16 22 22 H 1.48506 * 109.47185 * 210.00031 * 20 18 16 23 23 H 1.48499 * 109.47339 * 329.99770 * 20 18 16 24 24 H 1.09002 * 109.47167 * 269.96080 * 1 2 3 25 25 H 1.09006 * 109.46893 * 29.95559 * 1 2 3 26 26 H 1.08992 * 109.47349 * 149.95826 * 1 2 3 27 27 H 1.08006 * 126.29913 * 180.24361 * 6 4 3 28 28 H 1.09001 * 109.47060 * 0.03027 * 11 10 9 29 29 H 1.09004 * 109.47073 * 120.02516 * 11 10 9 30 30 H 1.09000 * 109.47212 * 240.02598 * 11 10 9 31 31 H 0.97004 * 120.00442 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0570 0.0000 4 7 3.6112 0.6457 -0.0006 5 1 4.3848 1.2307 -0.0004 6 6 3.6413 -0.7015 0.0046 7 6 2.3357 -1.1430 -0.0006 8 6 1.8872 -2.5487 -0.0004 9 7 0.6628 -2.9664 0.0000 10 7 0.5670 -4.3547 -0.0005 11 6 -0.6964 -5.0964 0.0003 12 6 1.7872 -4.9293 0.0046 13 8 2.0418 -6.1155 0.0104 14 6 2.7729 -3.7773 -0.0011 15 1 3.3928 -3.8033 0.8950 16 6 3.6290 -3.8125 -1.2408 17 1 3.5514 -3.0228 -1.9733 18 6 4.5121 -4.8526 -1.4393 19 7 4.6070 -5.8141 -0.5471 20 14 5.5739 -4.8960 -2.9756 21 1 6.8528 -4.1882 -2.7136 22 1 5.8554 -6.3070 -3.3431 23 1 4.8576 -4.2273 -4.0914 24 1 -0.3633 -0.0007 1.0277 25 1 -0.3633 0.8904 -0.5132 26 1 -0.3633 -0.8895 -0.5144 27 1 4.5259 -1.3212 0.0092 28 1 -1.5301 -4.3941 0.0008 29 1 -0.7502 -5.7235 -0.8896 30 1 -0.7491 -5.7235 0.8904 31 1 5.2280 -6.5460 -0.6869 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259900837.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:08:14 Heat of formation + Delta-G solvation = 94.624504 kcal Electronic energy + Delta-G solvation = -17967.776951 eV Core-core repulsion = 15059.515392 eV Total energy + Delta-G solvation = -2908.261559 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.83549 -39.59826 -35.83980 -33.48163 -32.79080 -31.84897 -29.51575 -28.37881 -27.57154 -25.83401 -23.93203 -21.84321 -19.92565 -19.55357 -18.70567 -16.97331 -16.56826 -15.63983 -14.83460 -14.62896 -14.49303 -14.04793 -13.67879 -13.01897 -12.84202 -12.69936 -12.50693 -12.41112 -11.93212 -11.75292 -11.69557 -11.36953 -11.02992 -10.79509 -10.54004 -10.37637 -9.76461 -9.29863 -9.10387 -8.67858 -8.62258 -8.20156 -7.10228 -6.12302 -4.24849 1.92825 2.44269 3.07694 3.21403 3.31205 3.33551 3.52881 3.61637 4.14462 4.34018 4.85322 5.11900 5.16936 5.36839 5.53856 5.67708 5.92099 5.95357 5.96783 6.10559 6.15320 6.27058 6.34024 6.60704 6.78643 7.01711 7.24320 7.48600 7.51611 7.72789 7.93280 7.97442 8.71114 8.85997 9.38888 9.40926 10.91881 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.017796 B = 0.010195 C = 0.006990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.038266 B = 2745.725144 C = 4004.593041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.107 3.893 3 N -0.314 5.314 4 N -0.476 5.476 5 H 0.440 0.560 6 C 0.115 3.885 7 C -0.165 4.165 8 C 0.180 3.820 9 N -0.274 5.274 10 N -0.496 5.496 11 C 0.119 3.881 12 C 0.498 3.502 13 O -0.483 6.483 14 C 0.021 3.979 15 H 0.082 0.918 16 C -0.523 4.523 17 H 0.069 0.931 18 C 0.071 3.929 19 N -0.838 5.838 20 Si 0.897 3.103 21 H -0.277 1.277 22 H -0.285 1.285 23 H -0.272 1.272 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.092 0.908 27 H 0.196 0.804 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.706 9.656 1.738 10.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.061 4.061 3 N -0.138 5.138 4 N -0.182 5.182 5 H 0.284 0.716 6 C -0.038 4.038 7 C -0.178 4.178 8 C -0.010 4.010 9 N -0.083 5.083 10 N -0.319 5.319 11 C -0.023 4.023 12 C 0.287 3.713 13 O -0.352 6.352 14 C -0.002 4.002 15 H 0.099 0.901 16 C -0.562 4.562 17 H 0.088 0.912 18 C -0.138 4.138 19 N -0.470 5.470 20 Si 0.724 3.276 21 H -0.203 1.203 22 H -0.210 1.210 23 H -0.197 1.197 24 H 0.093 0.907 25 H 0.085 0.915 26 H 0.110 0.890 27 H 0.213 0.787 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.580 10.054 1.806 11.195 hybrid contribution 1.709 -1.218 -0.899 2.283 sum -2.872 8.836 0.907 9.335 Atomic orbital electron populations 1.20249 0.86373 1.03549 1.03002 1.22519 0.97067 0.89545 0.96969 1.77016 0.86712 1.22687 1.27340 1.46038 1.07238 1.05612 1.59316 0.71629 1.23242 0.99781 0.84369 0.96389 1.17816 0.91517 0.89498 1.18965 1.22511 0.92090 0.92804 0.93551 1.74981 1.21555 0.93291 1.18460 1.49856 1.07178 1.02179 1.72722 1.21293 0.84848 0.95095 1.01066 1.22515 0.83156 0.91288 0.74355 1.90648 1.81198 1.15878 1.47490 1.19150 0.93271 0.86122 1.01674 0.90086 1.20386 1.20768 1.10068 1.04957 0.91238 1.25095 0.96866 0.95121 0.96691 1.70072 1.33632 1.09607 1.33699 0.86513 0.80425 0.77534 0.83132 1.20310 1.21048 1.19721 0.90669 0.91543 0.88967 0.78744 0.90672 0.92631 0.92660 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 10.05 36.00 0.36 -0.65 16 2 C 0.11 1.77 7.26 -82.02 -0.60 1.18 16 3 N -0.31 -4.94 12.64 33.89 0.43 -4.51 16 4 N -0.48 -6.30 7.32 30.90 0.23 -6.08 16 5 H 0.44 4.01 8.96 -182.72 -1.64 2.37 16 6 C 0.11 1.76 11.68 -16.42 -0.19 1.57 16 7 C -0.16 -2.99 6.09 -105.13 -0.64 -3.63 16 8 C 0.18 3.81 6.71 -79.47 -0.53 3.28 16 9 N -0.27 -5.77 10.37 35.26 0.37 -5.40 16 10 N -0.50 -11.09 3.94 -66.69 -0.26 -11.35 16 11 C 0.12 2.09 11.22 59.85 0.67 2.76 16 12 C 0.50 13.07 7.54 -10.49 -0.08 12.99 16 13 O -0.48 -14.22 16.06 5.52 0.09 -14.13 16 14 C 0.02 0.52 2.71 -93.25 -0.25 0.27 16 15 H 0.08 2.08 8.14 -51.93 -0.42 1.66 16 16 C -0.52 -13.56 8.34 -34.44 -0.29 -13.85 16 17 H 0.07 1.77 7.77 -52.49 -0.41 1.36 16 18 C 0.07 1.90 5.33 -17.82 -0.10 1.81 16 19 N -0.84 -24.01 11.41 55.43 0.63 -23.38 16 20 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.09 1.38 6.73 -51.93 -0.35 1.03 16 27 H 0.20 2.75 8.06 -52.48 -0.42 2.33 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 278.21 15.07 4.19 4.19 Total: -1.00 -33.39 278.21 -5.48 -38.87 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -4.49 Total: 0.55 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -1.64 Total: 5.72 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: 1.39 Total: -50.71 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: 0.09 Total: -14.13 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -33.39 -5.48 -38.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259900837.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.493 kcal (2) G-P(sol) polarization free energy of solvation -33.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds