Wall clock time and date at job start Mon Mar 30 2020 21:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34257 * 126.11634 * 2 1 4 4 O 1.34928 * 107.22357 * 180.02562 * 3 2 1 5 5 C 1.34176 * 107.74443 * 0.02562 * 4 3 2 6 6 N 1.39220 * 125.68969 * 179.97438 * 5 4 3 7 7 C 1.36445 * 127.13062 * 180.02562 * 6 5 4 8 8 N 1.30493 * 107.18222 * 180.26049 * 7 6 5 9 9 N 1.28530 * 109.94705 * 359.56031 * 8 7 6 10 10 C 1.30496 * 109.94410 * 0.45000 * 9 8 7 11 11 C 1.50700 * 126.40559 * 179.73109 * 10 9 8 12 12 C 1.53003 * 109.47230 * 269.99984 * 11 10 9 13 13 C 1.50692 * 109.47228 * 180.02562 * 12 11 10 14 14 H 1.08005 * 120.00061 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00339 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99738 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00365 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47145 * 89.99818 * 17 15 13 19 19 H 1.48499 * 109.47169 * 209.99917 * 17 15 13 20 20 H 1.48495 * 109.47042 * 329.99901 * 17 15 13 21 21 N 1.30845 * 108.62245 * 0.24003 * 5 4 3 22 22 H 1.08995 * 109.47793 * 89.99910 * 1 2 3 23 23 H 1.09004 * 109.46824 * 209.99960 * 1 2 3 24 24 H 1.09006 * 109.47294 * 329.99302 * 1 2 3 25 25 H 1.08005 * 126.38741 * 0.02562 * 3 2 1 26 26 H 1.08002 * 126.40468 * 359.97438 * 7 6 5 27 27 H 1.09005 * 109.47158 * 30.00219 * 11 10 9 28 28 H 1.08999 * 109.47113 * 149.99787 * 11 10 9 29 29 H 1.09000 * 109.46806 * 300.00026 * 12 11 10 30 30 H 1.08994 * 109.46794 * 60.00040 * 12 11 10 31 31 H 0.96996 * 119.99858 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2984 1.0846 0.0000 4 8 3.5749 0.6477 -0.0006 5 6 3.5481 -0.6938 -0.0015 6 7 4.6623 -1.5285 -0.0028 7 6 4.6693 -2.8930 -0.0043 8 7 5.9179 -3.2721 0.0005 9 7 6.6885 -2.2434 -0.0044 10 6 5.9736 -1.1517 -0.0030 11 6 6.4983 0.2610 -0.0018 12 6 6.6766 0.7377 1.4411 13 6 7.2007 2.1505 1.4423 14 1 7.3876 2.6580 0.5074 15 6 7.4417 2.7954 2.6369 16 7 7.2136 2.1777 3.7754 17 14 8.0920 4.5465 2.6384 18 1 6.9519 5.4981 2.6403 19 1 8.9215 4.7655 3.8505 20 1 8.9196 4.7682 1.4255 21 7 2.3000 -1.0867 -0.0067 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5140 25 1 1.9737 2.1146 0.0004 26 1 3.8033 -3.5384 -0.0042 27 1 7.4589 0.2922 -0.5161 28 1 5.7904 0.9120 -0.5147 29 1 5.7160 0.7064 1.9553 30 1 7.3845 0.0867 1.9539 31 1 7.3835 2.6313 4.6157 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259910647.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:08:16 Heat of formation + Delta-G solvation = 105.691893 kcal Electronic energy + Delta-G solvation = -17568.206281 eV Core-core repulsion = 14660.424640 eV Total energy + Delta-G solvation = -2907.781641 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.74815 -42.82254 -35.51639 -35.19180 -34.16123 -32.10776 -31.04078 -29.35236 -27.46505 -25.63476 -24.11230 -22.67835 -21.74579 -21.16276 -20.01650 -18.34430 -17.33848 -16.68314 -16.42875 -15.55455 -15.30726 -14.60808 -14.51654 -13.63540 -13.53764 -13.32694 -13.13251 -12.41094 -12.34204 -11.86371 -11.64297 -11.38444 -11.04133 -10.88951 -10.83157 -10.76099 -10.45250 -10.04421 -9.94792 -9.30447 -8.88629 -8.64318 -8.45853 -6.09669 -4.14141 0.85895 1.42084 1.91634 2.66717 2.92729 2.99452 3.25873 3.33099 3.36368 4.06384 4.36794 4.50755 4.62153 4.76402 5.11090 5.24554 5.26494 5.30098 5.35443 5.49203 5.60208 5.75087 5.99448 6.04899 6.24000 6.28435 6.61400 6.92113 7.41321 7.47856 7.59288 7.86195 8.23067 8.77954 8.91072 9.50358 11.01628 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.019096 B = 0.007203 C = 0.005563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.898092 B = 3886.127582 C = 5032.146901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.005 4.005 3 C -0.055 4.055 4 O -0.175 6.175 5 C 0.418 3.582 6 N -0.403 5.403 7 C 0.178 3.822 8 N -0.284 5.284 9 N -0.288 5.288 10 C 0.232 3.768 11 C -0.040 4.040 12 C 0.034 3.966 13 C -0.523 4.523 14 H 0.060 0.940 15 C 0.060 3.940 16 N -0.892 5.892 17 Si 0.896 3.104 18 H -0.281 1.281 19 H -0.285 1.285 20 H -0.272 1.272 21 N -0.473 5.473 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.227 0.773 26 H 0.228 0.772 27 H 0.097 0.903 28 H 0.077 0.923 29 H 0.014 0.986 30 H 0.027 0.973 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.774 -2.413 -8.174 16.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.126 4.126 3 C -0.126 4.126 4 O -0.058 6.058 5 C 0.121 3.879 6 N -0.101 5.101 7 C -0.107 4.107 8 N -0.119 5.119 9 N -0.123 5.123 10 C -0.034 4.034 11 C -0.080 4.080 12 C -0.004 4.004 13 C -0.561 4.561 14 H 0.078 0.922 15 C -0.142 4.142 16 N -0.530 5.530 17 Si 0.723 3.277 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.197 1.197 21 N -0.209 5.209 22 H 0.095 0.905 23 H 0.096 0.904 24 H 0.098 0.902 25 H 0.243 0.757 26 H 0.245 0.755 27 H 0.116 0.884 28 H 0.096 0.904 29 H 0.032 0.968 30 H 0.045 0.955 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.588 -3.968 -7.990 15.429 hybrid contribution -0.648 2.430 0.264 2.529 sum -13.236 -1.538 -7.726 15.403 Atomic orbital electron populations 1.20122 0.85614 1.03787 1.03086 1.21685 0.98205 0.87272 1.05445 1.24953 0.78543 1.01377 1.07728 1.84643 1.31260 1.20191 1.69695 1.20722 0.86276 0.78640 1.02245 1.43020 1.03724 1.06416 1.56961 1.26791 1.00050 0.79425 1.04460 1.74256 0.98362 1.22103 1.17142 1.74349 1.24315 0.93993 1.19676 1.26397 0.77522 1.00970 0.98507 1.20708 1.01002 0.82197 1.04067 1.19069 0.97559 0.96645 0.87124 1.21074 1.44311 0.98039 0.92651 0.92194 1.25013 0.95442 0.98275 0.95516 1.69975 1.48348 1.37339 0.97382 0.86531 0.78942 0.84438 0.77743 1.20667 1.21105 1.19656 1.70503 0.97510 1.31344 1.21532 0.90473 0.90356 0.90212 0.75671 0.75541 0.88435 0.90416 0.96813 0.95459 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.42 36.01 0.38 -0.15 16 2 C -0.01 -0.06 7.10 -82.81 -0.59 -0.65 16 3 C -0.05 -0.67 12.08 29.33 0.35 -0.31 16 4 O -0.17 -2.91 8.83 4.31 0.04 -2.88 16 5 C 0.42 7.08 8.74 -86.13 -0.75 6.32 16 6 N -0.40 -7.29 2.98 -62.42 -0.19 -7.48 16 7 C 0.18 2.90 12.63 -89.09 -1.13 1.77 16 8 N -0.28 -5.44 12.19 29.87 0.36 -5.08 16 9 N -0.29 -6.11 12.19 32.97 0.40 -5.71 16 10 C 0.23 4.70 7.29 -154.13 -1.12 3.58 16 11 C -0.04 -0.84 5.24 -27.88 -0.15 -0.98 16 12 C 0.03 0.88 4.95 -27.89 -0.14 0.74 16 13 C -0.52 -14.29 9.11 -34.44 -0.31 -14.60 16 14 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 17 Si 0.90 21.07 29.54 -169.99 -5.02 16.04 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 N -0.47 -7.09 11.19 -10.46 -0.12 -7.20 16 22 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.23 1.73 8.06 -52.48 -0.42 1.31 16 26 H 0.23 2.67 8.06 -52.49 -0.42 2.24 16 27 H 0.10 1.95 8.14 -51.93 -0.42 1.53 16 28 H 0.08 1.52 6.60 -51.93 -0.34 1.18 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 282.17 15.07 4.25 4.25 Total: -1.00 -33.38 282.17 -6.35 -39.73 By element: Atomic # 1 Polarization: 0.06 SS G_CDS: -3.27 Total: -3.20 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -3.55 Total: -2.71 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: 1.20 Total: -51.24 kcal Atomic # 8 Polarization: -2.91 SS G_CDS: 0.04 Total: -2.88 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -33.38 -6.35 -39.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259910647.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.426 kcal (2) G-P(sol) polarization free energy of solvation -33.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds