Wall clock time and date at job start Mon Mar 30 2020 21:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34257 * 126.11634 * 2 1 4 4 O 1.34928 * 107.22357 * 180.02562 * 3 2 1 5 5 C 1.34176 * 107.74443 * 0.02562 * 4 3 2 6 6 N 1.39220 * 125.68969 * 179.97438 * 5 4 3 7 7 C 1.36445 * 127.13062 * 180.02562 * 6 5 4 8 8 N 1.30493 * 107.18222 * 180.26049 * 7 6 5 9 9 N 1.28530 * 109.94705 * 359.56031 * 8 7 6 10 10 C 1.30496 * 109.94410 * 0.45000 * 9 8 7 11 11 C 1.50700 * 126.40559 * 179.73109 * 10 9 8 12 12 C 1.53003 * 109.47230 * 269.99984 * 11 10 9 13 13 C 1.50692 * 109.47228 * 180.02562 * 12 11 10 14 14 H 1.08005 * 120.00061 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00339 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99738 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00365 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47145 * 89.99818 * 17 15 13 19 19 H 1.48499 * 109.47169 * 209.99917 * 17 15 13 20 20 H 1.48495 * 109.47042 * 329.99901 * 17 15 13 21 21 N 1.30845 * 108.62245 * 0.24003 * 5 4 3 22 22 H 1.08995 * 109.47793 * 89.99910 * 1 2 3 23 23 H 1.09004 * 109.46824 * 209.99960 * 1 2 3 24 24 H 1.09006 * 109.47294 * 329.99302 * 1 2 3 25 25 H 1.08005 * 126.38741 * 0.02562 * 3 2 1 26 26 H 1.08002 * 126.40468 * 359.97438 * 7 6 5 27 27 H 1.09005 * 109.47158 * 30.00219 * 11 10 9 28 28 H 1.08999 * 109.47113 * 149.99787 * 11 10 9 29 29 H 1.09000 * 109.46806 * 300.00026 * 12 11 10 30 30 H 1.08994 * 109.46794 * 60.00040 * 12 11 10 31 31 H 0.96996 * 119.99858 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2984 1.0846 0.0000 4 8 3.5749 0.6477 -0.0006 5 6 3.5481 -0.6938 -0.0015 6 7 4.6623 -1.5285 -0.0028 7 6 4.6693 -2.8930 -0.0043 8 7 5.9179 -3.2721 0.0005 9 7 6.6885 -2.2434 -0.0044 10 6 5.9736 -1.1517 -0.0030 11 6 6.4983 0.2610 -0.0018 12 6 6.6766 0.7377 1.4411 13 6 7.2007 2.1505 1.4423 14 1 7.3876 2.6580 0.5074 15 6 7.4417 2.7954 2.6369 16 7 7.2136 2.1777 3.7754 17 14 8.0920 4.5465 2.6384 18 1 6.9519 5.4981 2.6403 19 1 8.9215 4.7655 3.8505 20 1 8.9196 4.7682 1.4255 21 7 2.3000 -1.0867 -0.0067 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5140 25 1 1.9737 2.1146 0.0004 26 1 3.8033 -3.5384 -0.0042 27 1 7.4589 0.2922 -0.5161 28 1 5.7904 0.9120 -0.5147 29 1 5.7160 0.7064 1.9553 30 1 7.3845 0.0867 1.9539 31 1 7.3835 2.6313 4.6157 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259910647.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:08:16 Heat of formation + Delta-G solvation = 84.132076 kcal Electronic energy + Delta-G solvation = -17569.141185 eV Core-core repulsion = 14660.424640 eV Total energy + Delta-G solvation = -2908.716544 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.95281 -44.16508 -36.66119 -36.63904 -35.92486 -33.98944 -32.03112 -31.07292 -28.35835 -27.51726 -25.44729 -24.12601 -23.39771 -22.47011 -21.34300 -19.68804 -18.71007 -18.40808 -17.70526 -16.99193 -16.65126 -16.47487 -15.63982 -15.30020 -14.90672 -14.30558 -14.20075 -14.10228 -13.45114 -13.17860 -13.14340 -13.02746 -12.87028 -12.58850 -12.18738 -11.99886 -11.93141 -11.87246 -11.70620 -11.37732 -10.60902 -10.45665 -9.70249 -8.23610 -6.36685 -0.38474 0.20263 0.78466 1.41372 1.43871 1.47393 1.52419 1.55549 1.79932 2.39647 2.87578 3.10802 3.21589 3.57710 3.71415 3.77695 4.07832 4.27800 4.42742 4.50647 4.59151 4.64707 4.77054 4.84594 4.89340 4.93579 5.32071 5.35768 5.47008 5.57086 5.72541 6.09999 6.31211 6.77817 7.31646 7.33579 8.88934 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.019096 B = 0.007203 C = 0.005563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.898092 B = 3886.127582 C = 5032.146901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.012 4.012 3 C -0.049 4.049 4 O -0.201 6.201 5 C 0.378 3.622 6 N -0.404 5.404 7 C 0.202 3.798 8 N -0.312 5.312 9 N -0.313 5.313 10 C 0.213 3.787 11 C -0.024 4.024 12 C 0.048 3.952 13 C -0.538 4.538 14 H 0.073 0.927 15 C 0.002 3.998 16 N -0.935 5.935 17 Si 0.971 3.029 18 H -0.268 1.268 19 H -0.286 1.286 20 H -0.259 1.259 21 N -0.468 5.468 22 H 0.095 0.905 23 H 0.077 0.923 24 H 0.105 0.895 25 H 0.268 0.732 26 H 0.271 0.729 27 H 0.103 0.897 28 H 0.091 0.909 29 H -0.014 1.014 30 H -0.011 1.011 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.690 -0.962 -9.143 18.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.134 4.134 3 C -0.119 4.119 4 O -0.085 6.085 5 C 0.083 3.917 6 N -0.100 5.100 7 C -0.083 4.083 8 N -0.147 5.147 9 N -0.149 5.149 10 C -0.054 4.054 11 C -0.063 4.063 12 C 0.009 3.991 13 C -0.576 4.576 14 H 0.091 0.909 15 C -0.197 4.197 16 N -0.575 5.575 17 Si 0.795 3.205 18 H -0.193 1.193 19 H -0.212 1.212 20 H -0.183 1.183 21 N -0.205 5.205 22 H 0.113 0.887 23 H 0.096 0.904 24 H 0.124 0.876 25 H 0.284 0.716 26 H 0.286 0.714 27 H 0.121 0.879 28 H 0.110 0.890 29 H 0.004 0.996 30 H 0.007 0.993 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.516 -2.519 -8.982 17.255 hybrid contribution -0.241 1.950 0.574 2.047 sum -14.757 -0.569 -8.408 16.994 Atomic orbital electron populations 1.20321 0.82256 1.05052 1.04631 1.22474 1.00036 0.86290 1.04553 1.25962 0.77033 1.03301 1.05607 1.84614 1.33640 1.20310 1.69895 1.20804 0.86335 0.78883 1.05696 1.42977 1.03567 1.07132 1.56348 1.27583 1.00331 0.79215 1.01190 1.74181 0.99512 1.21856 1.19170 1.74252 1.25696 0.94752 1.20203 1.26042 0.78739 1.00369 1.00296 1.20360 1.01899 0.83180 1.00868 1.18793 0.94814 0.95860 0.89615 1.21511 1.43993 0.98722 0.93341 0.90851 1.26020 0.95530 1.03119 0.94982 1.70130 1.49686 1.39509 0.98189 0.85357 0.78589 0.78599 0.77984 1.19311 1.21178 1.18290 1.70515 0.96976 1.32631 1.20346 0.88675 0.90433 0.87617 0.71601 0.71375 0.87859 0.89036 0.99556 0.99296 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.42 71.24 0.74 -0.02 16 2 C -0.01 -0.27 7.10 41.24 0.29 0.03 16 3 C -0.05 -1.09 12.08 66.91 0.81 -0.28 16 4 O -0.20 -6.58 8.83 -7.50 -0.07 -6.64 16 5 C 0.38 12.62 8.74 178.78 1.56 14.18 16 6 N -0.40 -14.66 2.98 -461.25 -1.37 -16.04 16 7 C 0.20 6.46 12.63 179.81 2.27 8.73 16 8 N -0.31 -12.10 12.19 -59.41 -0.72 -12.82 16 9 N -0.31 -13.67 12.19 -49.62 -0.60 -14.28 16 10 C 0.21 8.85 7.29 137.68 1.00 9.86 16 11 C -0.02 -1.01 5.24 29.85 0.16 -0.85 16 12 C 0.05 2.54 4.95 29.85 0.15 2.69 16 13 C -0.54 -29.71 9.11 25.60 0.23 -29.48 16 14 H 0.07 3.77 7.74 -2.91 -0.02 3.74 16 15 C 0.00 0.09 5.46 84.65 0.46 0.55 16 16 N -0.94 -56.84 13.29 21.45 0.28 -56.55 16 17 Si 0.97 42.93 29.54 68.60 2.03 44.95 16 18 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 19 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 21 N -0.47 -13.28 11.19 -301.38 -3.37 -16.65 16 22 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 25 H 0.27 3.10 8.06 -2.91 -0.02 3.08 16 26 H 0.27 5.75 8.06 -2.91 -0.02 5.72 16 27 H 0.10 4.22 8.14 -2.38 -0.02 4.20 16 28 H 0.09 3.61 6.60 -2.39 -0.02 3.60 16 29 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 30 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 31 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -74.65 282.17 5.00 -69.65 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: 1.15 Total: 2.98 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 7.68 Total: 5.40 kcal Atomic # 7 Polarization: -110.55 SS G_CDS: -5.79 Total: -116.34 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.07 Total: -6.64 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Total: -74.65 5.00 -69.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259910647.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.785 kcal (2) G-P(sol) polarization free energy of solvation -74.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds