Wall clock time and date at job start Mon Mar 30 2020 21:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40082 * 126.04008 * 2 1 4 4 C 1.30834 * 108.20758 * 180.02562 * 3 2 1 5 5 C 1.39867 * 108.20347 * 0.02562 * 4 3 2 6 6 C 1.34954 * 126.03681 * 180.02562 * 2 1 3 7 7 C 1.50701 * 126.12392 * 359.71674 * 6 2 1 8 8 C 1.52998 * 109.47053 * 264.99749 * 7 6 2 9 9 H 1.09001 * 110.50228 * 54.30009 * 8 7 6 10 10 C 1.51570 * 110.56070 * 291.56794 * 8 7 6 11 11 O 1.21287 * 127.14072 * 61.39128 * 10 8 7 12 12 N 1.34783 * 105.71225 * 241.42038 * 10 8 7 13 13 N 1.39175 * 111.43865 * 0.02562 * 12 10 8 14 14 C 1.31768 * 112.39210 * 359.91069 * 13 12 10 15 15 C 1.39105 * 126.82408 * 180.11299 * 14 13 12 16 16 H 1.07994 * 120.00013 * 180.02562 * 15 14 13 17 17 C 1.40590 * 119.99251 * 0.02562 * 15 14 13 18 18 N 1.30544 * 120.00632 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99249 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47254 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47135 * 120.00266 * 19 17 15 22 22 H 1.48504 * 109.46889 * 239.99518 * 19 17 15 23 23 H 1.08993 * 109.47474 * 269.97369 * 1 2 3 24 24 H 1.08995 * 109.46967 * 29.97700 * 1 2 3 25 25 H 1.09009 * 109.47150 * 149.97348 * 1 2 3 26 26 H 1.08000 * 125.89722 * 179.97438 * 4 3 2 27 27 H 1.07997 * 126.04251 * 180.02562 * 5 4 3 28 28 H 1.08993 * 109.47324 * 24.99900 * 7 6 2 29 29 H 1.09001 * 109.46836 * 144.99718 * 7 6 2 30 30 H 0.96999 * 124.27455 * 179.97438 * 12 10 8 31 31 H 0.97003 * 120.00643 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5347 0.7321 -0.0006 5 6 3.5437 -0.6666 -0.0015 6 6 2.2589 -1.0913 -0.0005 7 6 1.7973 -2.5258 0.0049 8 6 1.7665 -3.0463 1.4433 9 1 1.1623 -2.3931 2.0728 10 6 3.1727 -3.1664 1.9961 11 8 3.9782 -2.2727 2.1492 12 7 3.3423 -4.4727 2.2815 13 7 2.2039 -5.2124 1.9751 14 6 1.2366 -4.4645 1.4838 15 6 -0.0245 -4.8914 1.0809 16 1 -0.7368 -4.1792 0.6913 17 6 -0.3718 -6.2500 1.1809 18 7 0.4893 -7.1110 1.6514 19 14 -2.0652 -6.8234 0.6392 20 1 -2.8473 -5.6611 0.1469 21 1 -1.9243 -7.8230 -0.4499 22 1 -2.7701 -7.4420 1.7906 23 1 -0.3634 -0.0005 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3634 -0.8898 -0.5143 26 1 4.4054 1.3710 -0.0011 27 1 4.4210 -1.2964 -0.0018 28 1 0.7977 -2.5875 -0.4252 29 1 2.4850 -3.1310 -0.5859 30 1 4.1553 -4.8497 2.6528 31 1 0.2498 -8.0485 1.7201 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259915655.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:08:24 Heat of formation + Delta-G solvation = 60.912902 kcal Electronic energy + Delta-G solvation = -17887.836249 eV Core-core repulsion = 14978.112846 eV Total energy + Delta-G solvation = -2909.723403 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.24714 -41.08895 -37.76407 -35.40190 -34.83943 -33.75870 -31.60007 -29.59673 -27.80524 -27.50424 -25.93765 -22.25825 -21.96778 -21.45788 -20.44394 -18.43939 -18.19170 -17.45546 -16.64083 -16.53004 -16.32704 -15.46017 -15.35199 -15.01809 -14.75999 -14.54378 -13.69174 -13.60099 -13.29254 -13.13082 -13.04535 -12.81437 -12.73461 -12.64998 -12.25675 -11.83098 -11.62224 -11.11542 -11.04683 -10.15446 -9.83783 -9.41507 -9.31953 -8.47812 -6.59773 0.89537 1.26362 1.54269 1.62525 1.68959 1.71624 1.97382 2.28394 2.29265 2.69284 3.32817 3.47264 3.64892 3.78108 4.09791 4.20410 4.27185 4.42585 4.46133 4.54022 4.69253 4.89169 4.90314 4.92443 5.19113 5.34588 5.44331 5.79675 6.09880 6.16478 6.32054 6.71150 6.79127 6.89115 7.47415 8.07601 8.45044 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.026519 B = 0.007376 C = 0.005962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.613018 B = 3795.412910 C = 4695.440150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.375 5.375 3 N -0.327 5.327 4 C 0.038 3.962 5 C -0.257 4.257 6 C 0.080 3.920 7 C -0.009 4.009 8 C -0.113 4.113 9 H 0.103 0.897 10 C 0.467 3.533 11 O -0.570 6.570 12 N -0.573 5.573 13 N -0.395 5.395 14 C 0.184 3.816 15 C -0.430 4.430 16 H 0.117 0.883 17 C 0.028 3.972 18 N -0.774 5.774 19 Si 0.991 3.009 20 H -0.240 1.240 21 H -0.273 1.273 22 H -0.275 1.275 23 H 0.079 0.921 24 H 0.102 0.898 25 H 0.108 0.892 26 H 0.205 0.795 27 H 0.130 0.870 28 H 0.113 0.887 29 H 0.077 0.923 30 H 0.415 0.585 31 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.771 6.022 -5.106 9.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.159 5.159 3 N -0.150 5.150 4 C -0.146 4.146 5 C -0.287 4.287 6 C -0.047 4.047 7 C -0.049 4.049 8 C -0.137 4.137 9 H 0.121 0.879 10 C 0.252 3.748 11 O -0.450 6.450 12 N -0.311 5.311 13 N -0.222 5.222 14 C 0.023 3.977 15 C -0.469 4.469 16 H 0.135 0.865 17 C -0.195 4.195 18 N -0.400 5.400 19 Si 0.811 3.189 20 H -0.162 1.162 21 H -0.198 1.198 22 H -0.201 1.201 23 H 0.098 0.902 24 H 0.121 0.879 25 H 0.126 0.874 26 H 0.222 0.778 27 H 0.148 0.852 28 H 0.131 0.869 29 H 0.096 0.904 30 H 0.255 0.745 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.902 6.488 -4.701 9.393 hybrid contribution 0.723 -0.642 0.289 1.009 sum -4.179 5.847 -4.412 8.433 Atomic orbital electron populations 1.22193 0.72531 1.06059 1.04410 1.48690 1.07559 1.02626 1.57003 1.77160 1.02325 1.08910 1.26568 1.24144 0.95738 0.94998 0.99722 1.21254 0.96503 0.95358 1.15560 1.21048 0.91629 0.90538 1.01523 1.19745 1.04010 0.87481 0.93667 1.21321 0.95118 0.98836 0.98464 0.87937 1.21680 0.90048 0.83800 0.79267 1.90636 1.51586 1.44666 1.58126 1.47879 1.16653 1.06365 1.60165 1.77530 0.94199 1.15342 1.35109 1.21792 0.94585 0.87702 0.93635 1.19036 0.96303 0.94545 1.37059 0.86545 1.27047 1.02785 0.96445 0.93219 1.69923 1.36614 1.04258 1.29191 0.85000 0.76227 0.79414 0.78239 1.16203 1.19814 1.20062 0.90243 0.87906 0.87355 0.77797 0.85225 0.86896 0.90427 0.74456 0.90377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.95 11.27 127.77 1.44 3.39 16 2 N -0.38 -12.06 4.01 -356.03 -1.43 -13.49 16 3 N -0.33 -11.26 12.58 -57.03 -0.72 -11.98 16 4 C 0.04 1.27 12.03 85.24 1.02 2.29 16 5 C -0.26 -9.52 8.74 21.99 0.19 -9.33 16 6 C 0.08 2.85 5.88 41.40 0.24 3.09 16 7 C -0.01 -0.32 4.98 29.85 0.15 -0.17 16 8 C -0.11 -4.69 2.98 -11.77 -0.04 -4.72 16 9 H 0.10 4.16 8.14 -2.39 -0.02 4.14 16 10 C 0.47 21.51 8.00 87.93 0.70 22.22 16 11 O -0.57 -27.68 15.17 -3.05 -0.05 -27.73 16 12 N -0.57 -26.79 7.10 -172.79 -1.23 -28.02 16 13 N -0.39 -20.32 10.63 -46.80 -0.50 -20.81 16 14 C 0.18 8.65 6.38 43.02 0.27 8.92 16 15 C -0.43 -18.95 9.26 23.05 0.21 -18.74 16 16 H 0.12 4.35 7.85 -2.91 -0.02 4.33 16 17 C 0.03 1.21 5.51 85.46 0.47 1.68 16 18 N -0.77 -37.97 11.95 21.94 0.26 -37.71 16 19 Si 0.99 32.35 29.57 68.60 2.03 34.38 16 20 H -0.24 -7.01 7.11 99.48 0.71 -6.31 16 21 H -0.27 -8.89 7.11 99.48 0.71 -8.18 16 22 H -0.28 -9.05 7.11 99.48 0.71 -8.34 16 23 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.11 1.95 6.98 -2.38 -0.02 1.94 16 26 H 0.21 5.18 8.06 -2.91 -0.02 5.15 16 27 H 0.13 5.05 7.42 -2.91 -0.02 5.02 16 28 H 0.11 3.32 6.89 -2.39 -0.02 3.31 16 29 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 30 H 0.41 17.59 8.96 -213.91 -1.92 15.67 16 31 H 0.29 12.72 8.29 -92.71 -0.77 11.95 16 Total: -1.00 -64.01 274.36 2.31 -61.70 By element: Atomic # 1 Polarization: 35.77 SS G_CDS: -0.74 Total: 35.03 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 4.68 Total: 8.63 kcal Atomic # 7 Polarization: -108.41 SS G_CDS: -3.61 Total: -112.02 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.05 Total: -27.73 kcal Atomic # 14 Polarization: 32.35 SS G_CDS: 2.03 Total: 34.38 kcal Total: -64.01 2.31 -61.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259915655.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.614 kcal (2) G-P(sol) polarization free energy of solvation -64.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds