Wall clock time and date at job start Mon Mar 30 2020 21:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35194 * 128.03580 * 2 1 4 4 O 1.34071 * 106.71949 * 179.91364 * 3 2 1 5 5 N 1.20909 * 111.86271 * 0.38150 * 4 3 2 6 6 C 1.31120 * 111.39841 * 359.76453 * 5 4 3 7 7 C 1.48038 * 126.95856 * 180.02562 * 6 5 4 8 8 N 1.31414 * 126.51959 * 179.97438 * 7 6 5 9 9 N 1.28567 * 109.57400 * 179.97438 * 8 7 6 10 10 C 1.30687 * 109.99575 * 359.97438 * 9 8 7 11 11 C 1.50703 * 126.22266 * 180.02562 * 10 9 8 12 12 C 1.50695 * 109.47051 * 89.97380 * 11 10 9 13 13 H 1.08003 * 120.00111 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99855 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99689 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00100 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47254 * 60.00086 * 16 14 12 18 18 H 1.48504 * 109.47261 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47313 * 300.00035 * 16 14 12 20 20 N 1.35378 * 107.54824 * 359.73586 * 10 9 8 21 21 C 1.46497 * 127.04149 * 180.29946 * 20 10 9 22 22 H 1.09002 * 109.47152 * 269.67749 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.67849 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.67830 * 1 2 3 25 25 H 1.08007 * 126.64258 * 0.02562 * 3 2 1 26 26 H 1.08995 * 109.46686 * 209.97513 * 11 10 9 27 27 H 1.08998 * 109.46723 * 329.97141 * 11 10 9 28 28 H 0.97003 * 119.99575 * 179.97438 * 15 14 12 29 29 H 1.08997 * 109.47490 * 270.16033 * 21 20 10 30 30 H 1.09003 * 109.47349 * 30.16086 * 21 20 10 31 31 H 1.09004 * 109.46981 * 150.15898 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3400 1.0648 0.0000 4 8 3.5890 0.5774 0.0019 5 7 3.6006 -0.6316 -0.0044 6 6 2.3844 -1.1216 -0.0064 7 6 2.0009 -2.5514 -0.0131 8 7 0.7783 -3.0332 -0.0146 9 7 0.8216 -4.3181 -0.0215 10 6 2.0641 -4.7233 -0.0254 11 6 2.5338 -6.1553 -0.0342 12 6 2.6879 -6.6246 -1.4579 13 1 2.4682 -5.9530 -2.2747 14 6 3.1105 -7.9110 -1.7177 15 7 3.3785 -8.7286 -0.7231 16 14 3.3023 -8.4926 -3.4825 17 1 4.2989 -7.6401 -4.1791 18 1 3.7650 -9.9037 -3.4912 19 1 1.9950 -8.3966 -4.1802 20 7 2.8524 -3.6227 -0.0265 21 6 4.3168 -3.5861 -0.0367 22 1 -0.3633 -0.0058 1.0277 23 1 -0.3633 -0.8871 -0.5188 24 1 -0.3633 0.8929 -0.5088 25 1 2.0546 2.1065 0.0004 26 1 3.4935 -6.2259 0.4777 27 1 1.8022 -6.7807 0.4774 28 1 3.6755 -9.6338 -0.9059 29 1 4.6874 -3.5840 0.9883 30 1 4.6986 -4.4632 -0.5593 31 1 4.6542 -2.6838 -0.5469 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259964745.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:08:41 Heat of formation + Delta-G solvation = 130.824191 kcal Electronic energy + Delta-G solvation = -17496.546614 eV Core-core repulsion = 14589.854792 eV Total energy + Delta-G solvation = -2906.691822 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.01619 -42.36547 -35.17528 -34.64307 -33.48382 -32.33681 -30.77143 -28.22270 -27.84936 -27.02081 -24.02582 -23.34082 -21.62950 -20.65052 -19.88736 -17.77601 -17.73012 -16.69705 -16.23899 -15.51650 -15.02242 -14.73106 -14.04131 -13.29582 -13.23095 -13.14710 -12.99021 -12.48035 -12.31969 -12.16283 -11.67883 -11.38641 -11.06355 -10.89715 -10.80456 -10.70484 -10.10669 -9.77040 -9.76148 -9.54282 -9.45739 -8.58953 -8.15888 -6.21861 -4.27475 1.18328 1.66036 2.81397 2.90010 3.13661 3.24732 3.29352 3.33206 3.57630 3.75915 4.32574 4.41889 4.81873 5.01270 5.11793 5.16241 5.33445 5.47357 5.50555 5.62102 5.65637 5.78916 5.83720 5.94856 6.24667 6.42577 6.63728 7.15330 7.31085 7.42957 7.72162 8.02281 8.09090 8.74197 9.29848 9.37743 10.88040 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.036617 B = 0.005387 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.495841 B = 5196.037542 C = 5419.439735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.160 4.160 3 C -0.070 4.070 4 O 0.108 5.892 5 N -0.358 5.358 6 C 0.110 3.890 7 C 0.189 3.811 8 N -0.259 5.259 9 N -0.310 5.310 10 C 0.251 3.749 11 C 0.094 3.906 12 C -0.521 4.521 13 H 0.057 0.943 14 C 0.066 3.934 15 N -0.889 5.889 16 Si 0.902 3.098 17 H -0.276 1.276 18 H -0.284 1.284 19 H -0.274 1.274 20 N -0.463 5.463 21 C 0.076 3.924 22 H 0.075 0.925 23 H 0.090 0.910 24 H 0.068 0.932 25 H 0.220 0.780 26 H 0.041 0.959 27 H 0.061 0.939 28 H 0.267 0.733 29 H 0.075 0.925 30 H 0.105 0.895 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.599 17.576 2.077 17.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.165 4.165 3 C -0.150 4.150 4 O 0.040 5.960 5 N -0.062 5.062 6 C -0.049 4.049 7 C -0.074 4.074 8 N -0.104 5.104 9 N -0.152 5.152 10 C -0.014 4.014 11 C 0.055 3.945 12 C -0.560 4.560 13 H 0.076 0.924 14 C -0.137 4.137 15 N -0.527 5.527 16 Si 0.729 3.271 17 H -0.202 1.202 18 H -0.210 1.210 19 H -0.199 1.199 20 N -0.154 5.154 21 C -0.067 4.067 22 H 0.094 0.906 23 H 0.109 0.891 24 H 0.087 0.913 25 H 0.237 0.763 26 H 0.059 0.941 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.123 0.877 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.435 16.789 2.126 16.929 hybrid contribution 0.812 -0.117 -0.940 1.248 sum 1.247 16.672 1.186 16.760 Atomic orbital electron populations 1.20199 0.86540 1.03869 1.03169 1.21312 0.99149 0.89935 1.06142 1.25643 0.82720 1.01066 1.05616 1.84773 1.29133 1.15073 1.67037 1.74165 1.20890 0.91457 1.19715 1.20221 0.89155 0.91028 1.04452 1.20961 0.87940 0.86051 1.12475 1.74357 1.16301 1.03609 1.16115 1.74338 1.17107 1.01942 1.21799 1.26196 0.86442 0.93028 0.95771 1.18005 0.97643 0.79481 0.99353 1.20814 1.46725 0.97951 0.90513 0.92446 1.24937 0.94766 0.96231 0.97789 1.69924 1.44678 1.06935 1.31113 0.86487 0.78798 0.77707 0.84116 1.20167 1.20956 1.19881 1.46128 1.09114 1.05929 1.54205 1.22136 0.75295 1.05564 1.03728 0.90647 0.89110 0.91291 0.76317 0.94075 0.92132 0.92353 0.90649 0.87684 0.89338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.17 36.01 0.37 -0.52 16 2 C -0.16 -2.04 6.35 -104.10 -0.66 -2.70 16 3 C -0.07 -0.66 12.24 29.65 0.36 -0.29 16 4 O 0.11 1.31 11.18 17.10 0.19 1.50 16 5 N -0.36 -5.45 10.41 33.29 0.35 -5.10 16 6 C 0.11 1.82 7.14 -82.55 -0.59 1.23 16 7 C 0.19 3.81 7.93 -154.23 -1.22 2.59 16 8 N -0.26 -5.67 10.95 32.53 0.36 -5.31 16 9 N -0.31 -7.55 12.20 32.80 0.40 -7.15 16 10 C 0.25 5.92 7.21 -154.95 -1.12 4.80 16 11 C 0.09 2.38 5.14 -29.04 -0.15 2.24 16 12 C -0.52 -14.21 9.09 -34.44 -0.31 -14.53 16 13 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 14 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 15 N -0.89 -25.00 13.29 55.43 0.74 -24.26 16 16 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 20 N -0.46 -9.55 3.18 -118.40 -0.38 -9.93 16 21 C 0.08 1.27 10.53 59.85 0.63 1.90 16 22 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.09 1.24 7.09 -51.93 -0.37 0.87 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.22 0.90 8.06 -52.48 -0.42 0.48 16 26 H 0.04 1.02 7.86 -51.93 -0.41 0.61 16 27 H 0.06 1.62 8.14 -51.93 -0.42 1.20 16 28 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.10 1.80 7.82 -51.93 -0.41 1.39 16 31 H 0.09 1.37 6.70 -51.93 -0.35 1.02 16 LS Contribution 279.48 15.07 4.21 4.21 Total: -1.00 -31.84 279.48 -5.13 -36.97 By element: Atomic # 1 Polarization: -0.14 SS G_CDS: -3.19 Total: -3.33 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -2.79 Total: -3.60 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: 1.46 Total: -51.75 kcal Atomic # 8 Polarization: 1.31 SS G_CDS: 0.19 Total: 1.50 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.84 -5.13 -36.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259964745.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.799 kcal (2) G-P(sol) polarization free energy of solvation -31.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds