Wall clock time and date at job start Mon Mar 30 2020 21:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35194 * 128.03580 * 2 1 4 4 O 1.34071 * 106.71949 * 179.91364 * 3 2 1 5 5 N 1.20909 * 111.86271 * 0.38150 * 4 3 2 6 6 C 1.31120 * 111.39841 * 359.76453 * 5 4 3 7 7 C 1.48038 * 126.95856 * 180.02562 * 6 5 4 8 8 N 1.31414 * 126.51959 * 179.97438 * 7 6 5 9 9 N 1.28567 * 109.57400 * 179.97438 * 8 7 6 10 10 C 1.30687 * 109.99575 * 359.97438 * 9 8 7 11 11 C 1.50703 * 126.22266 * 180.02562 * 10 9 8 12 12 C 1.50695 * 109.47051 * 89.97380 * 11 10 9 13 13 H 1.08003 * 120.00111 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99855 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99689 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00100 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47254 * 60.00086 * 16 14 12 18 18 H 1.48504 * 109.47261 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47313 * 300.00035 * 16 14 12 20 20 N 1.35378 * 107.54824 * 359.73586 * 10 9 8 21 21 C 1.46497 * 127.04149 * 180.29946 * 20 10 9 22 22 H 1.09002 * 109.47152 * 269.67749 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.67849 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.67830 * 1 2 3 25 25 H 1.08007 * 126.64258 * 0.02562 * 3 2 1 26 26 H 1.08995 * 109.46686 * 209.97513 * 11 10 9 27 27 H 1.08998 * 109.46723 * 329.97141 * 11 10 9 28 28 H 0.97003 * 119.99575 * 179.97438 * 15 14 12 29 29 H 1.08997 * 109.47490 * 270.16033 * 21 20 10 30 30 H 1.09003 * 109.47349 * 30.16086 * 21 20 10 31 31 H 1.09004 * 109.46981 * 150.15898 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3400 1.0648 0.0000 4 8 3.5890 0.5774 0.0019 5 7 3.6006 -0.6316 -0.0044 6 6 2.3844 -1.1216 -0.0064 7 6 2.0009 -2.5514 -0.0131 8 7 0.7783 -3.0332 -0.0146 9 7 0.8216 -4.3181 -0.0215 10 6 2.0641 -4.7233 -0.0254 11 6 2.5338 -6.1553 -0.0342 12 6 2.6879 -6.6246 -1.4579 13 1 2.4682 -5.9530 -2.2747 14 6 3.1105 -7.9110 -1.7177 15 7 3.3785 -8.7286 -0.7231 16 14 3.3023 -8.4926 -3.4825 17 1 4.2989 -7.6401 -4.1791 18 1 3.7650 -9.9037 -3.4912 19 1 1.9950 -8.3966 -4.1802 20 7 2.8524 -3.6227 -0.0265 21 6 4.3168 -3.5861 -0.0367 22 1 -0.3633 -0.0058 1.0277 23 1 -0.3633 -0.8871 -0.5188 24 1 -0.3633 0.8929 -0.5088 25 1 2.0546 2.1065 0.0004 26 1 3.4935 -6.2259 0.4777 27 1 1.8022 -6.7807 0.4774 28 1 3.6755 -9.6338 -0.9059 29 1 4.6874 -3.5840 0.9883 30 1 4.6986 -4.4632 -0.5593 31 1 4.6542 -2.6838 -0.5469 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259964745.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:08:41 Heat of formation + Delta-G solvation = 111.297596 kcal Electronic energy + Delta-G solvation = -17497.393351 eV Core-core repulsion = 14589.854792 eV Total energy + Delta-G solvation = -2907.538559 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -46.09333 -44.03826 -36.32510 -36.28030 -35.36280 -33.55124 -32.49558 -29.72781 -29.05708 -28.55946 -25.78378 -24.94641 -22.73390 -22.01140 -21.49401 -18.93063 -18.85158 -18.69182 -17.71150 -17.21089 -16.68342 -16.34076 -15.18678 -14.75273 -14.53264 -14.35180 -14.15130 -14.07470 -13.86846 -13.60083 -13.24526 -12.99324 -12.72254 -12.60004 -12.31083 -12.09556 -12.04928 -11.66054 -11.46394 -11.14728 -10.68842 -10.36322 -9.80820 -8.31148 -6.44968 -0.05007 0.69634 1.26767 1.36994 1.39417 1.41820 1.50197 1.93535 2.26608 2.36481 2.52968 3.01924 3.33981 3.66988 3.75971 3.82676 4.06493 4.17080 4.19266 4.45130 4.56623 4.76481 4.85117 4.87560 4.93514 5.00981 5.10821 5.29080 5.44935 5.58126 5.73842 5.96612 6.60193 7.10122 7.23967 7.59231 8.78828 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.036617 B = 0.005387 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.495841 B = 5196.037542 C = 5419.439735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.179 4.179 3 C -0.027 4.027 4 O 0.127 5.873 5 N -0.370 5.370 6 C 0.063 3.937 7 C 0.209 3.791 8 N -0.280 5.280 9 N -0.341 5.341 10 C 0.230 3.770 11 C 0.108 3.892 12 C -0.538 4.538 13 H 0.045 0.955 14 C 0.023 3.977 15 N -0.916 5.916 16 Si 0.966 3.034 17 H -0.267 1.267 18 H -0.273 1.273 19 H -0.275 1.275 20 N -0.465 5.465 21 C 0.075 3.925 22 H 0.079 0.921 23 H 0.056 0.944 24 H 0.107 0.893 25 H 0.282 0.718 26 H 0.040 0.960 27 H 0.034 0.966 28 H 0.272 0.728 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.395 20.464 1.372 20.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.185 4.185 3 C -0.107 4.107 4 O 0.054 5.946 5 N -0.071 5.071 6 C -0.094 4.094 7 C -0.056 4.056 8 N -0.124 5.124 9 N -0.182 5.182 10 C -0.038 4.038 11 C 0.069 3.931 12 C -0.577 4.577 13 H 0.064 0.936 14 C -0.178 4.178 15 N -0.555 5.555 16 Si 0.790 3.210 17 H -0.191 1.191 18 H -0.198 1.198 19 H -0.200 1.200 20 N -0.155 5.155 21 C -0.067 4.067 22 H 0.097 0.903 23 H 0.075 0.925 24 H 0.125 0.875 25 H 0.297 0.703 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.081 0.919 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.235 19.640 1.429 19.731 hybrid contribution 0.601 -0.781 -0.675 1.194 sum 1.836 18.860 0.754 18.964 Atomic orbital electron populations 1.20204 0.85687 1.04071 1.03471 1.21621 1.00014 0.89542 1.07351 1.26630 0.80286 1.02518 1.01274 1.84745 1.30637 1.13811 1.65435 1.74168 1.20534 0.92823 1.19582 1.20336 0.91017 0.89947 1.08078 1.21593 0.87251 0.87626 1.09161 1.74284 1.17501 1.02535 1.18106 1.74219 1.17943 1.03448 1.22597 1.25693 0.86924 0.93080 0.98059 1.17646 0.96655 0.80511 0.98273 1.20971 1.47278 0.98367 0.91045 0.93644 1.25728 0.94093 0.96090 1.01906 1.70013 1.44984 1.07348 1.33111 0.85489 0.78726 0.77723 0.79069 1.19133 1.19794 1.20040 1.46297 1.10374 1.05280 1.53589 1.22329 0.73270 1.05880 1.05189 0.90280 0.92522 0.87471 0.70284 0.94223 0.94760 0.91919 0.88601 0.88450 0.87840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.54 10.17 71.24 0.72 -0.81 16 2 C -0.18 -4.07 6.35 -19.53 -0.12 -4.20 16 3 C -0.03 -0.36 12.24 67.12 0.82 0.46 16 4 O 0.13 2.56 11.18 71.35 0.80 3.36 16 5 N -0.37 -10.43 10.41 -49.47 -0.52 -10.95 16 6 C 0.06 1.99 7.14 42.89 0.31 2.30 16 7 C 0.21 8.52 7.93 136.46 1.08 9.60 16 8 N -0.28 -12.72 10.95 -51.01 -0.56 -13.28 16 9 N -0.34 -17.37 12.20 -50.14 -0.61 -17.98 16 10 C 0.23 11.30 7.21 137.97 1.00 12.29 16 11 C 0.11 5.75 5.14 29.10 0.15 5.90 16 12 C -0.54 -30.25 9.09 25.60 0.23 -30.02 16 13 H 0.05 2.61 7.74 -2.91 -0.02 2.59 16 14 C 0.02 1.24 5.46 84.65 0.46 1.70 16 15 N -0.92 -52.30 13.29 21.45 0.28 -52.02 16 16 Si 0.97 43.23 29.54 68.60 2.03 45.26 16 17 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 20 N -0.47 -19.61 3.18 -528.49 -1.68 -21.29 16 21 C 0.07 2.50 10.53 127.77 1.34 3.84 16 22 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.06 1.54 7.09 -2.39 -0.02 1.52 16 24 H 0.11 1.25 8.14 -2.38 -0.02 1.24 16 25 H 0.28 0.11 8.06 -2.91 -0.02 0.09 16 26 H 0.04 2.06 7.86 -2.39 -0.02 2.04 16 27 H 0.03 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 29 H 0.10 2.77 8.14 -2.39 -0.02 2.76 16 30 H 0.10 3.39 7.82 -2.39 -0.02 3.37 16 31 H 0.10 3.12 6.70 -2.39 -0.02 3.10 16 Total: -1.00 -72.20 279.48 6.89 -65.30 By element: Atomic # 1 Polarization: -0.63 SS G_CDS: 1.16 Total: 0.53 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: 6.00 Total: 1.06 kcal Atomic # 7 Polarization: -112.43 SS G_CDS: -3.08 Total: -115.51 kcal Atomic # 8 Polarization: 2.56 SS G_CDS: 0.80 Total: 3.36 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -72.20 6.89 -65.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259964745.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.602 kcal (2) G-P(sol) polarization free energy of solvation -72.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds