Wall clock time and date at job start Mon Mar 30 2020 21:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47227 * 2 1 4 4 C 1.50698 * 109.46879 * 119.99635 * 2 1 3 5 5 N 1.32055 * 125.96930 * 300.02795 * 4 2 1 6 6 C 1.33728 * 109.81149 * 179.97438 * 5 4 2 7 7 C 1.39542 * 125.66309 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99998 * 185.78200 * 7 6 5 9 9 C 1.40118 * 119.99643 * 5.50653 * 7 6 5 10 10 N 1.30804 * 120.00431 * 354.24250 * 9 7 6 11 11 Si 1.86801 * 119.99624 * 174.24354 * 9 7 6 12 12 H 1.48496 * 109.47338 * 94.98289 * 11 9 7 13 13 H 1.48505 * 109.46782 * 214.98301 * 11 9 7 14 14 H 1.48505 * 109.47150 * 334.98073 * 11 9 7 15 15 N 1.36919 * 108.67391 * 0.26149 * 6 5 4 16 16 N 1.39854 * 134.60863 * 180.48364 * 15 6 5 17 17 C 1.30971 * 119.79965 * 179.56740 * 16 15 6 18 18 N 1.32901 * 122.12574 * 359.72487 * 17 16 15 19 19 C 1.32380 * 121.69025 * 359.97438 * 18 17 16 20 20 O 1.35315 * 120.38325 * 179.97438 * 19 18 17 21 21 C 1.37955 * 106.80223 * 359.58075 * 15 6 5 22 22 H 1.09006 * 109.47043 * 300.00564 * 1 2 3 23 23 H 1.09003 * 109.47101 * 60.00109 * 1 2 3 24 24 H 1.09004 * 109.47690 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47031 * 239.99396 * 2 1 3 26 26 H 1.09004 * 109.47153 * 180.02562 * 3 2 1 27 27 H 1.09007 * 109.46774 * 299.99497 * 3 2 1 28 28 H 1.08996 * 109.47608 * 59.99749 * 3 2 1 29 29 H 0.96994 * 120.00523 * 180.02562 * 10 9 7 30 30 H 1.07999 * 118.94079 * 179.69466 * 17 16 15 31 31 H 0.96706 * 113.99465 * 270.03213 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7865 -0.3637 2.4808 6 6 2.3897 -1.2174 3.3148 7 6 2.3487 -1.1595 4.7084 8 1 2.9460 -1.8416 5.2951 9 6 1.5368 -0.2124 5.3465 10 7 0.9052 0.6896 4.6405 11 14 1.3564 -0.2379 7.2056 12 1 2.3274 0.7091 7.8102 13 1 -0.0243 0.1660 7.5745 14 1 1.6225 -1.6091 7.7100 15 7 3.0597 -2.1542 2.5742 16 7 3.8428 -3.2717 2.8804 17 6 4.3536 -3.9931 1.9139 18 7 4.1499 -3.7041 0.6328 19 6 3.4158 -2.6667 0.2621 20 8 3.2261 -2.3965 -1.0501 21 6 2.8365 -1.8480 1.2477 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9562 -0.8901 28 1 1.6767 1.9563 0.8899 29 1 0.3435 1.3455 5.0822 30 1 4.9603 -4.8502 2.1661 31 1 3.8922 -1.8078 -1.4307 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259964821.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:08:44 Heat of formation + Delta-G solvation = 69.639972 kcal Electronic energy + Delta-G solvation = -18130.403949 eV Core-core repulsion = 15221.058980 eV Total energy + Delta-G solvation = -2909.344969 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.99025 -38.12780 -36.82653 -34.76528 -33.56877 -31.81823 -29.87400 -28.78308 -26.57571 -25.86719 -23.77100 -22.38658 -21.29951 -19.09132 -18.36971 -17.90369 -16.43862 -16.14550 -15.27111 -15.02513 -14.36925 -13.99469 -13.66311 -13.51535 -13.10168 -12.74418 -11.97473 -11.95518 -11.58724 -11.56869 -11.32518 -11.23761 -10.81865 -10.68412 -10.48893 -10.32270 -10.09930 -9.85674 -9.53345 -8.92939 -8.40959 -8.34854 -7.20736 -6.87618 -4.63456 1.28692 2.44737 2.96716 2.99017 3.04789 3.38580 3.81679 3.88789 4.11319 4.36144 5.08828 5.17431 5.28667 5.44590 5.77202 5.80837 5.99319 6.13082 6.16237 6.32892 6.42443 6.46032 6.50479 6.61159 6.82622 6.90321 6.96932 7.26432 7.51112 7.79748 7.92201 8.02887 8.40345 8.55292 9.31756 9.46406 10.03283 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.020915 B = 0.009471 C = 0.006821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.413706 B = 2955.567496 C = 4104.021248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.016 4.016 3 C -0.136 4.136 4 C 0.142 3.858 5 N -0.454 5.454 6 C 0.417 3.583 7 C -0.415 4.415 8 H 0.096 0.904 9 C 0.075 3.925 10 N -0.723 5.723 11 Si 0.925 3.075 12 H -0.267 1.267 13 H -0.272 1.272 14 H -0.258 1.258 15 N -0.349 5.349 16 N -0.322 5.322 17 C 0.283 3.717 18 N -0.642 5.642 19 C 0.482 3.518 20 O -0.478 6.478 21 C -0.243 4.243 22 H 0.067 0.933 23 H 0.049 0.951 24 H 0.047 0.953 25 H 0.079 0.921 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.282 0.718 30 H 0.197 0.803 31 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.141 1.159 -5.066 5.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.035 4.035 3 C -0.194 4.194 4 C -0.015 4.015 5 N -0.173 5.173 6 C 0.183 3.817 7 C -0.454 4.454 8 H 0.114 0.886 9 C -0.152 4.152 10 N -0.345 5.345 11 Si 0.748 3.252 12 H -0.192 1.192 13 H -0.197 1.197 14 H -0.182 1.182 15 N -0.131 5.131 16 N -0.138 5.138 17 C -0.018 4.018 18 N -0.378 5.378 19 C 0.280 3.720 20 O -0.284 6.284 21 C -0.352 4.352 22 H 0.086 0.914 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.097 0.903 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.214 0.786 31 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 0.543 0.961 -4.129 4.274 hybrid contribution 0.512 -0.112 0.188 0.557 sum 1.055 0.849 -3.941 4.167 Atomic orbital electron populations 1.21707 0.94371 1.01470 1.01681 1.19548 0.95894 0.95140 0.92933 1.21739 1.00350 0.95426 1.01844 1.21269 0.94126 0.91260 0.94798 1.71372 1.23801 1.24267 0.97906 1.20061 0.87042 0.81495 0.93097 1.18502 1.23467 1.16053 0.87364 0.88557 1.25950 0.93971 0.93758 1.01537 1.70005 1.17563 1.09255 1.37691 0.86012 0.78573 0.80084 0.80531 1.19157 1.19722 1.18198 1.46409 1.41368 1.21112 1.04190 1.75563 1.10652 0.98832 1.28702 1.24939 0.95470 0.97423 0.83996 1.67770 1.27059 1.22755 1.20192 1.18552 0.84691 0.85810 0.82955 1.84527 1.53252 1.70505 1.20163 1.19635 1.20873 1.07492 0.87239 0.91421 0.93189 0.93343 0.90269 0.93480 0.93153 0.91345 0.90663 0.78640 0.73828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 9.17 37.16 0.34 -1.95 16 2 C -0.02 -0.28 3.34 -91.78 -0.31 -0.59 16 3 C -0.14 -2.20 9.17 37.15 0.34 -1.85 16 4 C 0.14 3.29 5.69 -82.09 -0.47 2.83 16 5 N -0.45 -11.93 9.34 -8.46 -0.08 -12.01 16 6 C 0.42 11.48 7.56 -155.71 -1.18 10.30 16 7 C -0.41 -11.00 9.43 -38.39 -0.36 -11.36 16 8 H 0.10 2.50 7.86 -52.49 -0.41 2.08 16 9 C 0.08 1.83 5.49 -17.28 -0.09 1.73 16 10 N -0.72 -18.04 11.88 55.56 0.66 -17.38 16 11 Si 0.92 17.93 29.57 -169.99 -5.03 12.91 16 12 H -0.27 -5.06 7.11 56.52 0.40 -4.65 16 13 H -0.27 -5.12 7.11 56.52 0.40 -4.71 16 14 H -0.26 -5.02 7.11 56.52 0.40 -4.61 16 15 N -0.35 -9.20 4.14 -10.03 -0.04 -9.25 16 16 N -0.32 -7.81 12.00 29.27 0.35 -7.46 16 17 C 0.28 5.88 12.36 -91.89 -1.14 4.74 16 18 N -0.64 -13.68 10.43 -14.39 -0.15 -13.83 16 19 C 0.48 10.27 7.86 -16.42 -0.13 10.14 16 20 O -0.48 -8.06 11.92 -17.64 -0.21 -8.27 16 21 C -0.24 -5.85 6.84 -83.80 -0.57 -6.42 16 22 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.08 1.28 6.42 -51.93 -0.33 0.95 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.66 8.14 -51.92 -0.42 0.23 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 30 H 0.20 3.09 8.06 -52.49 -0.42 2.66 16 31 H 0.40 4.56 9.06 45.56 0.41 4.98 16 LS Contribution 276.06 15.07 4.16 4.16 Total: -1.00 -31.65 276.06 -6.33 -37.98 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -2.43 Total: 5.58 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: -3.56 Total: 7.56 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: 0.74 Total: -59.92 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -0.21 Total: -8.27 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.65 -6.33 -37.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259964821.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.616 kcal (2) G-P(sol) polarization free energy of solvation -31.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds