Wall clock time and date at job start Mon Mar 30 2020 21:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35020 * 126.48476 * 2 1 4 4 N 1.33625 * 108.36236 * 179.97438 * 3 2 1 5 5 C 1.31399 * 109.25042 * 359.97438 * 4 3 2 6 6 C 1.48011 * 125.83570 * 180.02562 * 5 4 3 7 7 N 1.30903 * 126.43911 * 179.66668 * 6 5 4 8 8 O 1.21286 * 110.07043 * 179.80632 * 7 6 5 9 9 C 1.33680 * 110.05975 * 0.46401 * 8 7 6 10 10 C 1.50703 * 126.42222 * 179.71069 * 9 8 7 11 11 C 1.53002 * 109.47036 * 270.00129 * 10 9 8 12 12 C 1.50703 * 109.47032 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99708 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99956 * 179.97438 * 12 11 10 15 15 N 1.31508 * 119.99772 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99805 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47341 * 60.00056 * 16 14 12 18 18 H 1.48497 * 109.47108 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47383 * 300.00140 * 16 14 12 20 20 N 1.30938 * 107.16152 * 359.71375 * 9 8 7 21 21 N 1.36434 * 108.33751 * 359.77519 * 5 4 3 22 22 H 0.96998 * 126.49126 * 180.23210 * 21 5 4 23 23 H 1.09001 * 109.46953 * 90.02368 * 1 2 3 24 24 H 1.09000 * 109.47318 * 210.01966 * 1 2 3 25 25 H 1.09000 * 109.47161 * 330.02597 * 1 2 3 26 26 H 1.07998 * 125.81388 * 359.97438 * 3 2 1 27 27 H 1.09001 * 109.46928 * 30.00167 * 10 9 8 28 28 H 1.09002 * 109.46938 * 150.00237 * 10 9 8 29 29 H 1.09001 * 109.47293 * 299.99814 * 11 10 9 30 30 H 1.09005 * 109.46909 * 59.99808 * 11 10 9 31 31 H 0.97007 * 119.99979 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3099 1.0856 0.0000 4 7 3.5799 0.6699 0.0006 5 6 3.6057 -0.6438 0.0015 6 6 4.8225 -1.4865 0.0029 7 7 4.8620 -2.7950 0.0099 8 8 6.0133 -3.1766 0.0051 9 6 6.8436 -2.1290 0.0044 10 6 8.3498 -2.1810 0.0052 11 6 8.8587 -2.1972 1.4480 12 6 10.3649 -2.2498 1.4488 13 1 10.9049 -2.2693 0.5137 14 6 11.0533 -2.2720 2.6432 15 7 10.3955 -2.2477 3.7817 16 14 12.9201 -2.3365 2.6441 17 1 13.4571 -1.1428 1.9427 18 1 13.4141 -2.3524 4.0444 19 1 13.3733 -3.5663 1.9459 20 7 6.1032 -1.0491 0.0031 21 7 2.3194 -1.0984 0.0066 22 1 2.0354 -2.0259 0.0115 23 1 -0.3633 -0.0004 -1.0277 24 1 -0.3634 -0.8898 0.5141 25 1 -0.3633 0.8902 0.5134 26 1 1.9815 2.1144 -0.0004 27 1 8.6824 -3.0835 -0.5076 28 1 8.7438 -1.3046 -0.5093 29 1 8.5261 -1.2946 1.9608 30 1 8.4646 -3.0736 1.9625 31 1 10.8798 -2.2637 4.6221 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259971731.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:08:47 Heat of formation + Delta-G solvation = 111.464720 kcal Electronic energy + Delta-G solvation = -16719.055060 eV Core-core repulsion = 13811.523748 eV Total energy + Delta-G solvation = -2907.531312 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.24849 -42.20694 -35.71179 -34.53669 -33.09333 -32.75069 -31.70297 -30.18522 -27.25908 -25.87067 -24.23091 -22.78365 -21.56762 -21.02291 -20.52010 -17.99645 -17.75033 -16.86825 -16.36530 -15.49888 -15.04506 -14.55147 -14.18808 -13.84543 -13.60335 -13.27982 -13.20017 -12.86719 -12.45885 -12.17636 -11.70542 -11.40979 -10.97324 -10.84519 -10.72000 -10.32714 -10.18617 -10.17957 -10.13082 -9.44302 -9.29331 -8.43974 -8.34634 -6.08383 -4.13362 0.99089 1.76912 2.45362 2.50732 3.16857 3.26082 3.31491 3.36342 3.38359 3.52228 4.19107 4.41305 4.56056 4.74524 5.03540 5.14427 5.20758 5.28248 5.36024 5.48236 5.80532 5.93402 5.98736 6.19833 6.26145 6.46220 6.59926 6.98942 7.48514 7.56422 7.79236 7.86643 8.21683 8.36982 8.91589 9.51552 11.02852 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.050504 B = 0.003834 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.278044 B = 7302.173063 C = 7506.494482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.007 4.007 3 C -0.021 4.021 4 N -0.430 5.430 5 C 0.278 3.722 6 C 0.244 3.756 7 N -0.393 5.393 8 O 0.079 5.921 9 C 0.223 3.777 10 C -0.029 4.029 11 C 0.027 3.973 12 C -0.527 4.527 13 H 0.062 0.938 14 C 0.060 3.940 15 N -0.891 5.891 16 Si 0.898 3.102 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.275 1.275 20 N -0.459 5.459 21 N -0.547 5.547 22 H 0.424 0.576 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.087 0.913 26 H 0.179 0.821 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.028 0.972 30 H 0.024 0.976 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.618 1.406 -8.140 19.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.126 4.126 3 C -0.173 4.173 4 N -0.151 5.151 5 C 0.017 3.983 6 C -0.028 4.028 7 N -0.104 5.104 8 O 0.019 5.981 9 C 0.004 3.996 10 C -0.068 4.068 11 C -0.011 4.011 12 C -0.565 4.565 13 H 0.080 0.920 14 C -0.142 4.142 15 N -0.529 5.529 16 Si 0.726 3.274 17 H -0.200 1.200 18 H -0.213 1.213 19 H -0.201 1.201 20 N -0.192 5.192 21 N -0.152 5.152 22 H 0.263 0.737 23 H 0.095 0.905 24 H 0.086 0.914 25 H 0.106 0.894 26 H 0.197 0.803 27 H 0.112 0.888 28 H 0.122 0.878 29 H 0.047 0.953 30 H 0.043 0.957 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.659 1.883 -7.936 19.452 hybrid contribution 0.264 -1.042 0.218 1.097 sum -17.395 0.841 -7.718 19.049 Atomic orbital electron populations 1.20283 0.86333 1.03822 1.03114 1.21485 0.94686 0.86772 1.09638 1.22288 0.87606 0.99005 1.08374 1.70390 1.22262 1.06667 1.15732 1.18716 0.80773 0.88678 1.10089 1.21972 0.90795 0.86903 1.03128 1.74836 0.99996 1.12868 1.22677 1.85250 1.10548 1.36438 1.65823 1.29783 0.99224 0.79246 0.91372 1.20855 0.76645 1.04728 1.04591 1.19182 0.96480 0.98622 0.86858 1.21020 0.90597 1.52089 0.92789 0.92002 1.25009 0.98819 0.94895 0.95502 1.69957 1.35862 1.49682 0.97438 0.86556 0.85075 0.78736 0.77056 1.20043 1.21279 1.20093 1.72165 0.98796 1.27429 1.20785 1.43134 1.05983 1.09958 1.56095 0.73688 0.90478 0.91426 0.89387 0.80346 0.88752 0.87787 0.95332 0.95750 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 10.44 36.01 0.38 -0.06 16 2 C -0.01 -0.08 7.23 -81.60 -0.59 -0.67 16 3 C -0.02 -0.27 11.77 -17.92 -0.21 -0.48 16 4 N -0.43 -7.41 11.27 -11.19 -0.13 -7.53 16 5 C 0.28 4.65 8.10 -154.65 -1.25 3.40 16 6 C 0.24 4.57 8.14 -156.08 -1.27 3.30 16 7 N -0.39 -7.03 12.21 30.97 0.38 -6.65 16 8 O 0.08 1.44 11.29 18.01 0.20 1.64 16 9 C 0.22 4.27 7.75 -12.98 -0.10 4.17 16 10 C -0.03 -0.55 5.78 -27.88 -0.16 -0.71 16 11 C 0.03 0.66 4.96 -27.88 -0.14 0.52 16 12 C -0.53 -14.04 9.11 -34.44 -0.31 -14.35 16 13 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 16 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 N -0.46 -9.42 11.58 -9.89 -0.11 -9.53 16 21 N -0.55 -6.70 6.21 -6.85 -0.04 -6.74 16 22 H 0.42 4.13 8.96 -40.82 -0.37 3.76 16 23 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.18 1.65 8.06 -52.49 -0.42 1.22 16 27 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 28 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 285.50 15.07 4.30 4.30 Total: -1.00 -32.62 285.50 -6.73 -39.36 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: -3.29 Total: -1.97 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -3.76 Total: -3.31 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: 0.83 Total: -55.93 kcal Atomic # 8 Polarization: 1.44 SS G_CDS: 0.20 Total: 1.64 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.62 -6.73 -39.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259971731.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.822 kcal (2) G-P(sol) polarization free energy of solvation -32.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds