Wall clock time and date at job start Mon Mar 30 2020 21:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35020 * 126.48476 * 2 1 4 4 N 1.33625 * 108.36236 * 179.97438 * 3 2 1 5 5 C 1.31399 * 109.25042 * 359.97438 * 4 3 2 6 6 C 1.48011 * 125.83570 * 180.02562 * 5 4 3 7 7 N 1.30903 * 126.43911 * 179.66668 * 6 5 4 8 8 O 1.21286 * 110.07043 * 179.80632 * 7 6 5 9 9 C 1.33680 * 110.05975 * 0.46401 * 8 7 6 10 10 C 1.50703 * 126.42222 * 179.71069 * 9 8 7 11 11 C 1.53002 * 109.47036 * 270.00129 * 10 9 8 12 12 C 1.50703 * 109.47032 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99708 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99956 * 179.97438 * 12 11 10 15 15 N 1.31508 * 119.99772 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99805 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47341 * 60.00056 * 16 14 12 18 18 H 1.48497 * 109.47108 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47383 * 300.00140 * 16 14 12 20 20 N 1.30938 * 107.16152 * 359.71375 * 9 8 7 21 21 N 1.36434 * 108.33751 * 359.77519 * 5 4 3 22 22 H 0.96998 * 126.49126 * 180.23210 * 21 5 4 23 23 H 1.09001 * 109.46953 * 90.02368 * 1 2 3 24 24 H 1.09000 * 109.47318 * 210.01966 * 1 2 3 25 25 H 1.09000 * 109.47161 * 330.02597 * 1 2 3 26 26 H 1.07998 * 125.81388 * 359.97438 * 3 2 1 27 27 H 1.09001 * 109.46928 * 30.00167 * 10 9 8 28 28 H 1.09002 * 109.46938 * 150.00237 * 10 9 8 29 29 H 1.09001 * 109.47293 * 299.99814 * 11 10 9 30 30 H 1.09005 * 109.46909 * 59.99808 * 11 10 9 31 31 H 0.97007 * 119.99979 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3099 1.0856 0.0000 4 7 3.5799 0.6699 0.0006 5 6 3.6057 -0.6438 0.0015 6 6 4.8225 -1.4865 0.0029 7 7 4.8620 -2.7950 0.0099 8 8 6.0133 -3.1766 0.0051 9 6 6.8436 -2.1290 0.0044 10 6 8.3498 -2.1810 0.0052 11 6 8.8587 -2.1972 1.4480 12 6 10.3649 -2.2498 1.4488 13 1 10.9049 -2.2693 0.5137 14 6 11.0533 -2.2720 2.6432 15 7 10.3955 -2.2477 3.7817 16 14 12.9201 -2.3365 2.6441 17 1 13.4571 -1.1428 1.9427 18 1 13.4141 -2.3524 4.0444 19 1 13.3733 -3.5663 1.9459 20 7 6.1032 -1.0491 0.0031 21 7 2.3194 -1.0984 0.0066 22 1 2.0354 -2.0259 0.0115 23 1 -0.3633 -0.0004 -1.0277 24 1 -0.3634 -0.8898 0.5141 25 1 -0.3633 0.8902 0.5134 26 1 1.9815 2.1144 -0.0004 27 1 8.6824 -3.0835 -0.5076 28 1 8.7438 -1.3046 -0.5093 29 1 8.5261 -1.2946 1.9608 30 1 8.4646 -3.0736 1.9625 31 1 10.8798 -2.2637 4.6221 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259971731.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:08:46 Heat of formation + Delta-G solvation = 87.986080 kcal Electronic energy + Delta-G solvation = -16720.073170 eV Core-core repulsion = 13811.523748 eV Total energy + Delta-G solvation = -2908.549422 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -46.69512 -43.22525 -37.21332 -36.24530 -34.50399 -34.10202 -32.79123 -31.78596 -28.18430 -27.76031 -25.52165 -24.37913 -23.07118 -22.08911 -21.82298 -19.38247 -19.07411 -18.43905 -18.12254 -16.51811 -16.46300 -16.19845 -15.77040 -15.02111 -14.83499 -14.37470 -14.24362 -13.85830 -13.76679 -13.44683 -13.32600 -12.96094 -12.77283 -12.60388 -12.25703 -11.96973 -11.93907 -11.38880 -11.35836 -11.24591 -11.06032 -10.54520 -9.34578 -8.18936 -6.31055 -0.33166 0.45055 1.29154 1.44759 1.47258 1.50474 1.57734 1.69453 2.07056 2.33578 2.45164 2.84578 3.16629 3.79514 3.80764 4.03344 4.23517 4.29516 4.40963 4.51826 4.54919 4.76783 4.78982 4.93289 5.10075 5.13608 5.44553 5.52116 5.54601 5.78730 6.07813 6.13926 6.73378 6.84626 6.93022 7.39123 8.93443 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.050504 B = 0.003834 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.278044 B = 7302.173063 C = 7506.494482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.028 3.972 3 C -0.046 4.046 4 N -0.468 5.468 5 C 0.228 3.772 6 C 0.242 3.758 7 N -0.390 5.390 8 O 0.078 5.922 9 C 0.222 3.778 10 C -0.014 4.014 11 C 0.032 3.968 12 C -0.539 4.539 13 H 0.081 0.919 14 C -0.001 4.001 15 N -0.936 5.936 16 Si 0.971 3.029 17 H -0.266 1.266 18 H -0.290 1.290 19 H -0.261 1.261 20 N -0.489 5.489 21 N -0.534 5.534 22 H 0.435 0.565 23 H 0.097 0.903 24 H 0.082 0.918 25 H 0.109 0.891 26 H 0.208 0.792 27 H 0.125 0.875 28 H 0.116 0.884 29 H -0.009 1.009 30 H 0.001 0.999 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.745 1.421 -9.334 20.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.092 4.092 3 C -0.197 4.197 4 N -0.190 5.190 5 C -0.031 4.031 6 C -0.029 4.029 7 N -0.102 5.102 8 O 0.020 5.980 9 C 0.003 3.997 10 C -0.053 4.053 11 C -0.006 4.006 12 C -0.576 4.576 13 H 0.099 0.901 14 C -0.199 4.199 15 N -0.576 5.576 16 Si 0.795 3.205 17 H -0.190 1.190 18 H -0.216 1.216 19 H -0.186 1.186 20 N -0.222 5.222 21 N -0.140 5.140 22 H 0.276 0.724 23 H 0.116 0.884 24 H 0.101 0.899 25 H 0.128 0.872 26 H 0.224 0.776 27 H 0.143 0.857 28 H 0.134 0.866 29 H 0.009 0.991 30 H 0.020 0.980 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.776 1.857 -9.154 20.971 hybrid contribution 0.394 -0.968 0.589 1.200 sum -18.382 0.889 -8.566 20.299 Atomic orbital electron populations 1.20547 0.82247 1.05660 1.04923 1.22337 0.96635 0.85319 1.04938 1.22910 0.86453 1.01109 1.09250 1.70268 1.25152 1.07392 1.16140 1.18491 0.81555 0.88727 1.14304 1.22341 0.91109 0.87257 1.02181 1.74792 0.99636 1.12593 1.23199 1.85228 1.10684 1.36153 1.65934 1.29657 0.99210 0.79375 0.91455 1.20637 0.76583 1.06874 1.01184 1.18971 0.96079 0.95689 0.89875 1.21544 0.91677 1.50884 0.93528 0.90126 1.26017 1.04176 0.94568 0.95151 1.70116 1.37969 1.51348 0.98180 0.85410 0.78684 0.79456 0.76961 1.19031 1.21590 1.18563 1.72133 1.00060 1.28372 1.21683 1.43157 1.04813 1.11106 1.54930 0.72372 0.88447 0.89889 0.87243 0.77574 0.85663 0.86626 0.99061 0.98048 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.44 71.24 0.74 0.21 16 2 C 0.03 0.51 7.23 41.07 0.30 0.80 16 3 C -0.05 -1.10 11.77 83.68 0.98 -0.11 16 4 N -0.47 -16.21 11.27 -189.30 -2.13 -18.34 16 5 C 0.23 7.69 8.10 136.60 1.11 8.80 16 6 C 0.24 9.31 8.14 137.10 1.12 10.43 16 7 N -0.39 -14.14 12.21 -58.98 -0.72 -14.86 16 8 O 0.08 2.88 11.29 74.52 0.84 3.72 16 9 C 0.22 8.67 7.75 88.36 0.68 9.36 16 10 C -0.01 -0.53 5.78 29.85 0.17 -0.36 16 11 C 0.03 1.63 4.96 29.85 0.15 1.78 16 12 C -0.54 -28.71 9.11 25.60 0.23 -28.48 16 13 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 14 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 15 N -0.94 -56.48 13.29 21.45 0.28 -56.20 16 16 Si 0.97 42.77 29.54 68.60 2.03 44.79 16 17 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 18 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 19 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 20 N -0.49 -20.66 11.58 -302.44 -3.50 -24.16 16 21 N -0.53 -12.42 6.21 -175.57 -1.09 -13.51 16 22 H 0.44 7.82 8.96 -92.71 -0.83 6.99 16 23 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 24 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 25 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.21 3.37 8.06 -2.91 -0.02 3.34 16 27 H 0.13 3.96 8.14 -2.39 -0.02 3.94 16 28 H 0.12 4.13 8.14 -2.39 -0.02 4.11 16 29 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 30 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 31 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 Total: -1.00 -73.22 285.50 1.99 -71.23 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: 0.34 Total: 4.51 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 5.95 Total: 2.82 kcal Atomic # 7 Polarization: -119.91 SS G_CDS: -7.16 Total: -127.07 kcal Atomic # 8 Polarization: 2.88 SS G_CDS: 0.84 Total: 3.72 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -73.22 1.99 -71.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259971731.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.214 kcal (2) G-P(sol) polarization free energy of solvation -73.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds