Wall clock time and date at job start Mon Mar 30 2020 21:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34134 * 125.98762 * 2 1 4 4 C 1.30498 * 109.25377 * 180.24685 * 3 2 1 5 5 N 1.35043 * 108.70029 * 359.75606 * 4 3 2 6 6 H 0.97007 * 126.39950 * 179.97438 * 5 4 3 7 7 C 1.34665 * 125.99103 * 179.82121 * 2 1 3 8 8 C 1.50703 * 126.59091 * 0.02723 * 7 2 1 9 9 C 1.52995 * 109.47146 * 277.26444 * 8 7 2 10 10 H 1.09003 * 110.50351 * 52.26113 * 9 8 7 11 11 C 1.51565 * 110.68686 * 289.44189 * 9 8 7 12 12 O 1.21288 * 127.14321 * 61.39230 * 11 9 8 13 13 N 1.34783 * 105.71511 * 241.36257 * 11 9 8 14 14 N 1.39176 * 111.43423 * 359.76486 * 13 11 9 15 15 C 1.31439 * 112.35158 * 0.42644 * 14 13 11 16 16 C 1.39098 * 126.64932 * 179.86473 * 15 14 13 17 17 H 1.07997 * 120.00162 * 187.72491 * 16 15 14 18 18 C 1.40586 * 119.99793 * 7.72522 * 16 15 14 19 19 N 1.30558 * 119.99787 * 190.72640 * 18 16 15 20 20 Si 1.86794 * 120.00154 * 10.72790 * 18 16 15 21 21 H 1.48508 * 109.46849 * 269.99848 * 20 18 16 22 22 H 1.48500 * 109.47207 * 150.00250 * 20 18 16 23 23 H 1.48493 * 109.47328 * 29.99863 * 20 18 16 24 24 H 1.08997 * 109.47152 * 274.20679 * 1 2 3 25 25 H 1.08996 * 109.47409 * 34.20512 * 1 2 3 26 26 H 1.09001 * 109.47295 * 154.21169 * 1 2 3 27 27 H 1.07999 * 125.65607 * 179.73152 * 4 3 2 28 28 H 1.09006 * 109.47242 * 157.25980 * 8 7 2 29 29 H 1.08999 * 109.46985 * 37.26466 * 8 7 2 30 30 H 0.96998 * 124.28029 * 179.97438 * 13 11 9 31 31 H 0.97002 * 120.00278 * 354.91768 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0853 0.0000 4 6 3.5449 0.7096 -0.0053 5 7 3.5912 -0.6400 -0.0034 6 1 4.3913 -1.1885 -0.0067 7 6 2.2984 -1.0896 0.0034 8 6 1.8472 -2.5275 0.0073 9 6 1.5200 -2.9554 1.4393 10 1 0.8253 -2.2522 1.8986 11 6 2.7851 -3.0708 2.2660 12 8 3.5743 -2.1868 2.5242 13 7 2.8507 -4.3595 2.6551 14 7 1.7670 -5.0908 2.1776 15 6 0.9474 -4.3575 1.4577 16 6 -0.2223 -4.7848 0.8381 17 1 -0.7516 -4.1231 0.1686 18 6 -0.7155 -6.0783 1.0835 19 7 -1.6857 -6.5565 0.3522 20 14 0.0170 -7.1125 2.4557 21 1 1.1475 -7.9140 1.9218 22 1 -1.0228 -8.0235 2.9980 23 1 0.5087 -6.2225 3.5379 24 1 -0.3633 0.0754 1.0249 25 1 -0.3634 0.8499 -0.5777 26 1 -0.3634 -0.9253 -0.4471 27 1 4.4004 1.3687 -0.0107 28 1 2.6430 -3.1591 -0.3879 29 1 0.9584 -2.6311 -0.6150 30 1 3.5614 -4.7298 3.2016 31 1 -2.1158 -5.9942 -0.3109 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259975109.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:08:51 Heat of formation + Delta-G solvation = 21.850006 kcal Electronic energy + Delta-G solvation = -17983.200353 eV Core-core repulsion = 15071.783056 eV Total energy + Delta-G solvation = -2911.417298 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.03414 -41.46795 -38.04566 -35.71023 -34.83996 -33.97350 -32.22790 -30.55564 -27.89032 -27.53595 -25.57522 -22.54751 -22.20615 -21.37642 -20.37724 -19.49985 -18.67675 -18.36715 -16.75282 -16.43315 -16.04280 -15.69774 -15.60506 -15.12812 -14.70635 -14.24575 -13.99246 -13.75096 -13.65843 -13.53583 -13.41948 -12.91532 -12.88062 -12.45395 -12.02038 -11.76403 -11.22233 -11.04072 -10.88966 -10.70948 -10.04760 -9.73109 -9.32200 -9.09558 -6.85211 0.91940 1.20845 1.58238 1.62375 1.98512 2.06508 2.17032 2.32818 2.33400 2.64618 3.10297 3.35998 3.60379 3.78620 4.04233 4.14402 4.19850 4.39561 4.45726 4.58090 4.77286 4.89510 5.07120 5.10515 5.13185 5.34277 5.47102 5.85457 5.88946 6.07242 6.29287 6.57819 6.60660 7.15257 7.24871 7.62754 8.00022 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.030695 B = 0.007561 C = 0.006377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.975876 B = 3702.248499 C = 4389.491727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.020 4.020 3 N -0.530 5.530 4 C 0.188 3.812 5 N -0.549 5.549 6 H 0.425 0.575 7 C -0.021 4.021 8 C 0.002 3.998 9 C -0.116 4.116 10 H 0.112 0.888 11 C 0.481 3.519 12 O -0.570 6.570 13 N -0.553 5.553 14 N -0.460 5.460 15 C 0.199 3.801 16 C -0.468 4.468 17 H 0.094 0.906 18 C 0.035 3.965 19 N -0.811 5.811 20 Si 1.127 2.873 21 H -0.283 1.283 22 H -0.305 1.305 23 H -0.255 1.255 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.243 0.757 28 H 0.067 0.933 29 H 0.108 0.892 30 H 0.423 0.577 31 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.462 6.281 -2.037 8.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.149 4.149 3 N -0.251 5.251 4 C -0.096 4.096 5 N -0.151 5.151 6 H 0.264 0.736 7 C -0.137 4.137 8 C -0.037 4.037 9 C -0.140 4.140 10 H 0.129 0.871 11 C 0.266 3.734 12 O -0.451 6.451 13 N -0.293 5.293 14 N -0.292 5.292 15 C 0.041 3.959 16 C -0.509 4.509 17 H 0.112 0.888 18 C -0.187 4.187 19 N -0.435 5.435 20 Si 0.954 3.046 21 H -0.210 1.210 22 H -0.235 1.235 23 H -0.181 1.181 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.259 0.741 28 H 0.085 0.915 29 H 0.126 0.874 30 H 0.265 0.735 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.663 5.325 -0.926 7.828 hybrid contribution 0.948 1.053 -0.748 1.603 sum 6.611 6.378 -1.675 9.338 Atomic orbital electron populations 1.20067 0.86873 1.03124 1.02275 1.20815 0.97372 0.88109 1.08557 1.70112 1.01785 1.31281 1.21905 1.25555 0.97635 0.82368 1.04032 1.43126 1.07968 1.08800 1.55212 0.73622 1.20918 0.84739 0.96436 1.11653 1.19516 1.02457 0.88422 0.93312 1.21442 0.96425 0.98345 0.97812 0.87062 1.21387 0.87610 0.83256 0.81132 1.90621 1.48011 1.44460 1.61990 1.47161 1.24028 1.07791 1.50275 1.75960 1.02700 1.18869 1.31633 1.21497 0.93553 0.89610 0.91203 1.19799 1.05210 1.01424 1.24421 0.88769 1.28055 0.93810 0.97182 0.99690 1.70530 1.18561 1.38817 1.15637 0.82565 0.73174 0.73880 0.74945 1.20968 1.23481 1.18078 0.91749 0.90793 0.90432 0.74087 0.91470 0.87408 0.73479 0.89703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.88 10.26 71.24 0.73 -1.15 16 2 C -0.02 -0.67 7.09 41.39 0.29 -0.38 16 3 N -0.53 -17.78 11.25 -188.32 -2.12 -19.89 16 4 C 0.19 5.10 13.04 180.26 2.35 7.46 16 5 N -0.55 -15.67 5.71 -186.49 -1.07 -16.73 16 6 H 0.43 10.47 8.96 -92.70 -0.83 9.64 16 7 C -0.02 -0.69 5.77 40.95 0.24 -0.45 16 8 C 0.00 0.08 4.95 29.85 0.15 0.23 16 9 C -0.12 -4.52 2.95 -11.77 -0.03 -4.56 16 10 H 0.11 4.36 8.14 -2.39 -0.02 4.34 16 11 C 0.48 19.64 8.05 87.93 0.71 20.35 16 12 O -0.57 -24.47 17.05 -3.05 -0.05 -24.52 16 13 N -0.55 -22.34 7.10 -172.80 -1.23 -23.57 16 14 N -0.46 -20.65 7.58 -46.97 -0.36 -21.01 16 15 C 0.20 8.71 6.07 43.06 0.26 8.97 16 16 C -0.47 -21.30 9.63 23.05 0.22 -21.08 16 17 H 0.09 4.13 8.06 -2.91 -0.02 4.11 16 18 C 0.04 1.66 5.53 85.45 0.47 2.13 16 19 N -0.81 -38.89 13.64 21.94 0.30 -38.59 16 20 Si 1.13 48.63 26.45 68.60 1.81 50.45 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 22 H -0.31 -12.86 7.11 99.48 0.71 -12.15 16 23 H -0.26 -11.20 6.22 99.48 0.62 -10.58 16 24 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.08 2.06 7.22 -2.39 -0.02 2.05 16 27 H 0.24 4.10 8.06 -2.91 -0.02 4.08 16 28 H 0.07 2.23 8.12 -2.38 -0.02 2.22 16 29 H 0.11 3.44 7.25 -2.39 -0.02 3.42 16 30 H 0.42 14.83 8.96 -213.91 -1.92 12.92 16 31 H 0.29 13.25 8.73 -92.71 -0.81 12.44 16 Total: -1.00 -58.76 272.34 1.00 -57.76 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: -1.68 Total: 24.58 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: 5.39 Total: 11.52 kcal Atomic # 7 Polarization: -115.32 SS G_CDS: -4.47 Total: -119.79 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.05 Total: -24.52 kcal Atomic # 14 Polarization: 48.63 SS G_CDS: 1.81 Total: 50.45 kcal Total: -58.76 1.00 -57.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259975109.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.614 kcal (2) G-P(sol) polarization free energy of solvation -58.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds