Wall clock time and date at job start Mon Mar 30 2020 21:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.47713 * 2 1 4 4 C 1.50711 * 109.47023 * 240.00179 * 2 1 3 5 5 H 1.07998 * 119.99986 * 240.00220 * 4 2 1 6 6 C 1.37878 * 119.99722 * 60.00440 * 4 2 1 7 7 N 1.31513 * 119.99900 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99688 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47147 * 89.99551 * 8 6 4 10 10 H 1.48498 * 109.47183 * 209.99856 * 8 6 4 11 11 H 1.48500 * 109.47159 * 330.00026 * 8 6 4 12 12 N 1.46497 * 109.47349 * 120.00605 * 2 1 3 13 13 C 1.38395 * 119.99978 * 274.99930 * 12 2 1 14 14 N 1.32954 * 120.77986 * 359.97438 * 13 12 2 15 15 C 1.32155 * 121.18612 * 179.97438 * 14 13 12 16 16 N 1.31433 * 122.58039 * 0.02562 * 15 14 13 17 17 C 1.33521 * 120.50655 * 359.97438 * 16 15 14 18 18 N 1.34407 * 135.65753 * 179.97438 * 17 16 15 19 19 N 1.28717 * 109.33513 * 180.02562 * 18 17 16 20 20 N 1.28919 * 111.64414 * 0.02562 * 19 18 17 21 21 C 1.46500 * 125.97639 * 180.02562 * 20 19 18 22 22 C 1.36950 * 108.04446 * 359.97438 * 20 19 18 23 23 H 1.08999 * 109.47410 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47330 * 300.00100 * 1 2 3 25 25 H 1.09006 * 109.47038 * 59.99847 * 1 2 3 26 26 H 0.97000 * 119.99362 * 179.97438 * 7 6 4 27 27 H 0.96998 * 120.00586 * 94.99075 * 12 2 1 28 28 H 1.08006 * 118.70728 * 179.97438 * 15 14 13 29 29 H 1.09004 * 109.46936 * 269.96909 * 21 20 19 30 30 H 1.09000 * 109.47181 * 29.96752 * 21 20 19 31 31 H 1.08997 * 109.47280 * 149.97190 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6033 8 14 2.3212 -1.1202 -4.0080 9 1 1.3425 -2.1615 -4.4120 10 1 2.4865 -0.1412 -5.1123 11 1 3.6291 -1.7583 -3.7123 12 7 2.0183 -0.6907 1.1960 13 6 2.1505 -0.0004 2.3883 14 7 1.8393 1.2899 2.4655 15 6 1.9620 1.9567 3.5999 16 7 2.3934 1.3958 4.7074 17 6 2.7300 0.1039 4.7264 18 7 3.1911 -0.7559 5.6509 19 7 3.3495 -1.9148 5.1138 20 7 3.0246 -1.9091 3.8662 21 6 3.0828 -3.0559 2.9565 22 6 2.6145 -0.6437 3.5404 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 0.7088 1.1615 -3.4844 27 1 2.2489 -1.6319 1.1525 28 1 1.6981 3.0039 3.6172 29 1 4.0626 -3.0925 2.4801 30 1 2.9179 -3.9748 3.5192 31 1 2.3114 -2.9538 2.1932 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260006490.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:09:11 Heat of formation + Delta-G solvation = 149.390277 kcal Electronic energy + Delta-G solvation = -17834.612057 eV Core-core repulsion = 14961.018071 eV Total energy + Delta-G solvation = -2873.593985 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.20478 -39.49104 -36.76582 -34.64294 -33.17217 -31.94607 -30.83953 -28.57535 -28.02316 -25.49335 -24.56154 -23.87992 -21.31295 -20.76824 -19.00442 -18.08554 -17.10456 -16.89063 -16.34866 -15.40782 -14.86111 -14.33307 -14.24926 -13.77930 -13.36794 -13.15990 -12.68262 -12.32265 -12.20473 -11.63452 -11.50979 -11.21212 -11.03591 -10.86808 -10.65584 -10.43550 -10.39448 -9.55073 -9.53914 -9.20115 -8.80457 -8.63854 -7.50271 -6.31250 -4.42373 0.81044 1.34937 2.09114 2.52856 3.11750 3.19156 3.20658 3.47863 3.77411 4.16081 4.18783 4.22461 4.45894 4.52994 4.79954 5.01806 5.03791 5.17894 5.43751 5.73025 6.34659 6.45425 6.62437 6.80126 6.89611 7.04988 7.20332 7.42591 7.61119 7.74562 7.95293 8.10984 8.32919 8.57583 8.72679 9.25206 10.74366 Molecular weight = 248.11amu Principal moments of inertia in cm(-1) A = 0.031577 B = 0.006447 C = 0.005612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.514398 B = 4342.375450 C = 4988.467037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.266 3.734 3 H 0.063 0.937 4 C -0.544 4.544 5 H 0.060 0.940 6 C 0.071 3.929 7 N -0.878 5.878 8 Si 0.903 3.097 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.274 1.274 12 N -0.671 5.671 13 C 0.503 3.497 14 N -0.568 5.568 15 C 0.362 3.638 16 N -0.543 5.543 17 C 0.275 3.725 18 N -0.263 5.263 19 N -0.007 5.007 20 N -0.284 5.284 21 C 0.079 3.921 22 C -0.152 4.152 23 H 0.024 0.976 24 H 0.019 0.981 25 H 0.094 0.906 26 H 0.267 0.733 27 H 0.395 0.605 28 H 0.204 0.796 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.704 -5.136 6.149 8.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.165 3.835 3 H 0.080 0.920 4 C -0.583 4.583 5 H 0.078 0.922 6 C -0.133 4.133 7 N -0.514 5.514 8 Si 0.730 3.270 9 H -0.204 1.204 10 H -0.208 1.208 11 H -0.199 1.199 12 N -0.299 5.299 13 C 0.244 3.756 14 N -0.299 5.299 15 C 0.068 3.932 16 N -0.269 5.269 17 C 0.025 3.975 18 N -0.138 5.138 19 N 0.009 4.991 20 N -0.088 5.088 21 C -0.062 4.062 22 C -0.282 4.282 23 H 0.043 0.957 24 H 0.038 0.962 25 H 0.113 0.887 26 H 0.077 0.923 27 H 0.233 0.767 28 H 0.220 0.780 29 H 0.116 0.884 30 H 0.128 0.872 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.856 -4.884 7.031 8.760 hybrid contribution 0.207 -1.234 -1.926 2.297 sum 2.064 -6.118 5.105 8.231 Atomic orbital electron populations 1.22098 0.97888 0.99185 1.01391 1.19024 0.91340 0.94401 0.78707 0.91960 1.21136 1.33254 1.13609 0.90259 0.92213 1.24842 0.94582 0.94868 0.99024 1.69879 1.35242 1.22080 1.24244 0.86429 0.79153 0.79354 0.82086 1.20424 1.20847 1.19868 1.46004 1.64118 1.12055 1.07694 1.17963 0.85576 0.88229 0.83857 1.68375 1.27821 1.04730 1.28982 1.24743 0.87589 0.99775 0.81069 1.67701 1.21334 1.07340 1.30549 1.20385 0.97781 0.91754 0.87586 1.75218 1.19889 0.94861 1.23816 1.78105 1.12638 1.17297 0.91015 1.46790 1.44762 1.08551 1.08684 1.22439 1.05254 0.86068 0.92452 1.21035 1.17121 0.88618 1.01393 0.95659 0.96196 0.88714 0.92287 0.76739 0.77955 0.88391 0.87232 0.88422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 9.27 37.15 0.34 -2.93 16 2 C 0.27 6.01 2.59 -69.08 -0.18 5.83 16 3 H 0.06 1.60 7.58 -51.93 -0.39 1.20 16 4 C -0.54 -13.13 8.73 -34.43 -0.30 -13.43 16 5 H 0.06 1.37 7.74 -52.49 -0.41 0.97 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -22.85 11.32 55.43 0.63 -22.22 16 8 Si 0.90 19.23 29.54 -169.99 -5.02 14.21 16 9 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 10 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 12 N -0.67 -12.54 5.20 -54.89 -0.29 -12.83 16 13 C 0.50 9.40 7.51 -154.85 -1.16 8.24 16 14 N -0.57 -10.80 9.36 -13.78 -0.13 -10.93 16 15 C 0.36 6.04 12.24 -92.15 -1.13 4.91 16 16 N -0.54 -10.00 10.49 -14.40 -0.15 -10.15 16 17 C 0.28 5.25 8.56 -157.76 -1.35 3.90 16 18 N -0.26 -4.92 12.41 30.76 0.38 -4.54 16 19 N -0.01 -0.12 13.09 60.35 0.79 0.67 16 20 N -0.28 -4.18 3.79 -65.37 -0.25 -4.43 16 21 C 0.08 0.74 10.84 59.85 0.65 1.39 16 22 C -0.15 -2.67 6.98 -84.05 -0.59 -3.26 16 23 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 26 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 27 H 0.40 6.32 5.53 -40.82 -0.23 6.10 16 28 H 0.20 2.50 8.06 -52.48 -0.42 2.08 16 29 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.10 0.88 5.90 -51.93 -0.31 0.57 16 LS Contribution 270.28 15.07 4.07 4.07 Total: -1.00 -29.71 270.28 -6.67 -36.37 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -2.89 Total: 3.43 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: -3.81 Total: 6.33 kcal Atomic # 7 Polarization: -65.40 SS G_CDS: 0.99 Total: -64.42 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.21 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.71 -6.67 -36.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260006490.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.763 kcal (2) G-P(sol) polarization free energy of solvation -29.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds