Wall clock time and date at job start Mon Mar 30 2020 21:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31789 * 118.55278 * 2 1 4 4 C 1.32578 * 120.66356 * 180.02562 * 3 2 1 5 5 O 1.34065 * 136.38627 * 180.02562 * 4 3 2 6 6 N 1.21006 * 112.97322 * 179.16448 * 5 4 3 7 7 C 1.30193 * 113.37641 * 0.78178 * 6 5 4 8 8 C 1.41116 * 118.37051 * 359.72653 * 4 3 2 9 9 C 1.39712 * 119.07031 * 0.55977 * 8 4 3 10 10 N 1.38034 * 120.95778 * 179.71339 * 9 8 4 11 11 C 1.46501 * 120.00058 * 179.72148 * 10 9 8 12 12 H 1.09005 * 109.47511 * 325.00188 * 11 10 9 13 13 C 1.53003 * 109.47002 * 84.99998 * 11 10 9 14 14 C 1.50700 * 109.47364 * 204.99875 * 11 10 9 15 15 H 1.07999 * 119.99498 * 354.49233 * 14 11 10 16 16 C 1.37874 * 120.00257 * 174.48812 * 14 11 10 17 17 N 1.31513 * 120.00294 * 164.80037 * 16 14 11 18 18 Si 1.86802 * 119.99934 * 344.79307 * 16 14 11 19 19 H 1.48493 * 109.47639 * 270.00209 * 18 16 14 20 20 H 1.48507 * 109.47028 * 30.00450 * 18 16 14 21 21 H 1.48503 * 109.46976 * 149.99960 * 18 16 14 22 22 N 1.31978 * 118.55252 * 180.02562 * 2 1 3 23 23 H 1.09002 * 109.47466 * 269.97649 * 1 2 3 24 24 H 1.09001 * 109.47300 * 29.97714 * 1 2 3 25 25 H 1.09008 * 109.47210 * 149.97478 * 1 2 3 26 26 H 1.07993 * 127.36957 * 179.39069 * 7 6 5 27 27 H 0.96997 * 120.00168 * 359.72653 * 10 9 8 28 28 H 1.08999 * 109.47417 * 293.54677 * 13 11 10 29 29 H 1.09000 * 109.46891 * 53.54723 * 13 11 10 30 30 H 1.08999 * 109.47166 * 173.54185 * 13 11 10 31 31 H 0.97002 * 119.99750 * 354.89772 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1368 1.1576 0.0000 4 6 3.4617 1.2064 -0.0005 5 8 4.3976 2.1663 -0.0003 6 7 5.5249 1.7268 0.0152 7 6 5.5722 0.4257 0.0118 8 6 4.1775 -0.0097 0.0049 9 6 3.4696 -1.2141 -0.0014 10 7 4.1302 -2.4261 -0.0024 11 6 3.3669 -3.6765 -0.0029 12 1 2.4592 -3.5484 0.5870 13 6 2.9933 -4.0454 -1.4400 14 6 4.2044 -4.7766 0.5966 15 1 5.2343 -4.5880 0.8612 16 6 3.6558 -6.0239 0.8072 17 7 4.4376 -7.0550 1.0420 18 14 1.8020 -6.2491 0.7592 19 1 1.2434 -6.0471 2.1202 20 1 1.2069 -5.2575 -0.1724 21 1 1.4821 -7.6218 0.2915 22 7 2.1377 -1.1593 -0.0005 23 1 -0.3634 -0.0004 1.0277 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3634 -0.8898 -0.5143 26 1 6.4537 -0.1982 0.0139 27 1 5.0999 -2.4499 -0.0027 28 1 2.2950 -3.3074 -1.8348 29 1 3.8921 -4.0613 -2.0564 30 1 2.5266 -5.0304 -1.4527 31 1 5.4011 -6.9540 0.9940 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260020619.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:09:21 Heat of formation + Delta-G solvation = 104.543986 kcal Electronic energy + Delta-G solvation = -17726.584370 eV Core-core repulsion = 14818.752952 eV Total energy + Delta-G solvation = -2907.831418 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.56379 -40.28333 -36.83794 -33.98581 -33.13139 -32.68309 -31.54394 -29.46472 -28.41966 -25.22855 -24.66954 -22.69893 -22.07992 -20.52691 -19.26866 -18.05057 -17.67192 -17.48791 -16.71771 -15.22096 -14.82865 -14.46488 -14.01022 -13.75599 -13.43517 -13.17458 -12.72884 -12.37005 -12.30288 -12.01709 -11.83599 -11.65097 -11.28819 -10.68735 -10.67895 -10.32455 -10.00375 -9.75218 -9.58065 -9.10326 -9.05775 -8.55479 -7.75034 -6.71780 -4.38990 0.82602 1.31814 2.23398 2.38973 3.30051 3.33886 3.39990 3.49130 3.87601 4.00725 4.30387 4.31679 4.41952 4.72102 5.03660 5.05373 5.13409 5.61129 5.71888 5.76428 5.82536 6.16447 6.29795 6.42583 6.47185 6.74113 6.88522 7.11974 7.34231 7.58879 7.93868 8.10200 8.22278 8.45806 8.62156 9.30713 10.67882 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.028066 B = 0.006969 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.393325 B = 4016.845247 C = 4798.504161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.406 3.594 3 N -0.560 5.560 4 C 0.287 3.713 5 O 0.071 5.929 6 N -0.342 5.342 7 C 0.071 3.929 8 C -0.360 4.360 9 C 0.518 3.482 10 N -0.651 5.651 11 C 0.242 3.758 12 H 0.054 0.946 13 C -0.154 4.154 14 C -0.625 4.625 15 H 0.062 0.938 16 C 0.043 3.957 17 N -0.894 5.894 18 Si 1.038 2.962 19 H -0.282 1.282 20 H -0.264 1.264 21 H -0.283 1.283 22 N -0.580 5.580 23 H 0.090 0.910 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.203 0.797 27 H 0.408 0.592 28 H 0.033 0.967 29 H 0.042 0.958 30 H 0.061 0.939 31 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.155 11.454 -3.067 12.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.136 3.864 3 N -0.294 5.294 4 C 0.098 3.902 5 O 0.022 5.978 6 N -0.053 5.053 7 C -0.118 4.118 8 C -0.376 4.376 9 C 0.265 3.735 10 N -0.274 5.274 11 C 0.139 3.861 12 H 0.071 0.929 13 C -0.213 4.213 14 C -0.662 4.662 15 H 0.080 0.920 16 C -0.164 4.164 17 N -0.526 5.526 18 Si 0.864 3.136 19 H -0.209 1.209 20 H -0.189 1.189 21 H -0.208 1.208 22 N -0.311 5.311 23 H 0.108 0.892 24 H 0.106 0.894 25 H 0.110 0.890 26 H 0.219 0.781 27 H 0.245 0.755 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.455 11.144 -2.833 12.727 hybrid contribution 2.480 0.332 -0.162 2.508 sum -2.974 11.476 -2.994 12.227 Atomic orbital electron populations 1.20605 0.84893 1.04344 1.04226 1.23063 0.97479 0.80882 0.84927 1.67111 1.04202 1.30498 1.27618 1.21493 0.90312 0.85796 0.92551 1.84793 1.08606 1.31534 1.72910 1.73635 0.98407 1.13607 1.19655 1.25478 0.96518 0.90716 0.99100 1.21122 0.95362 0.96593 1.24486 1.17895 0.87749 0.84805 0.83082 1.45436 1.09346 1.03155 1.69431 1.19324 0.93252 0.79713 0.93766 0.92865 1.22461 0.99643 1.00545 0.98667 1.22066 0.99570 0.96353 1.48254 0.91982 1.25708 1.06888 0.91321 0.92514 1.70825 1.06324 1.31139 1.44316 0.84195 0.74986 0.76607 0.77789 1.20893 1.18926 1.20843 1.68280 1.06454 1.28873 1.27447 0.89166 0.89397 0.89037 0.78059 0.75521 0.94817 0.93855 0.92026 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 10.29 36.00 0.37 -0.55 16 2 C 0.41 6.50 7.62 -157.05 -1.20 5.30 16 3 N -0.56 -9.43 10.34 -10.68 -0.11 -9.54 16 4 C 0.29 4.93 8.82 -16.14 -0.14 4.78 16 5 O 0.07 1.17 11.11 17.09 0.19 1.36 16 6 N -0.34 -5.27 11.96 31.87 0.38 -4.89 16 7 C 0.07 1.01 12.45 -15.09 -0.19 0.82 16 8 C -0.36 -6.04 6.48 -105.10 -0.68 -6.72 16 9 C 0.52 9.45 7.50 -154.97 -1.16 8.28 16 10 N -0.65 -12.26 5.19 -54.94 -0.28 -12.55 16 11 C 0.24 5.28 2.14 -69.08 -0.15 5.14 16 12 H 0.05 1.23 6.21 -51.93 -0.32 0.90 16 13 C -0.15 -3.17 8.78 37.16 0.33 -2.84 16 14 C -0.62 -15.86 9.02 -34.44 -0.31 -16.17 16 15 H 0.06 1.66 7.96 -52.49 -0.42 1.25 16 16 C 0.04 1.14 5.33 -17.82 -0.09 1.05 16 17 N -0.89 -25.58 13.70 55.43 0.76 -24.82 16 18 Si 1.04 23.25 26.17 -169.99 -4.45 18.80 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.26 -5.41 5.54 56.52 0.31 -5.09 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 22 N -0.58 -10.57 9.27 -9.96 -0.09 -10.66 16 23 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.09 0.96 8.14 -51.92 -0.42 0.54 16 26 H 0.20 2.07 8.06 -52.49 -0.42 1.65 16 27 H 0.41 6.92 8.55 -40.82 -0.35 6.58 16 28 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.06 1.29 5.06 -51.93 -0.26 1.02 16 31 H 0.27 7.68 8.73 -40.82 -0.36 7.33 16 LS Contribution 271.18 15.07 4.09 4.09 Total: -1.00 -29.33 271.18 -5.88 -35.21 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -3.13 Total: 3.91 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -3.23 Total: -0.90 kcal Atomic # 7 Polarization: -63.11 SS G_CDS: 0.65 Total: -62.46 kcal Atomic # 8 Polarization: 1.17 SS G_CDS: 0.19 Total: 1.36 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -4.45 Total: 18.80 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.33 -5.88 -35.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260020619.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.753 kcal (2) G-P(sol) polarization free energy of solvation -29.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds